Unique cost dynamics elucidate the role of frameshifting errors in promoting translational robustness

Tobias Warnecke, Y Huang, T M Przytycka, Laurence D Hurst

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

There is now considerable evidence supporting the view that codon usage is frequently under selection for translational accuracy. There are, however, multiple forms of inaccuracy (missense, premature termination, and frameshifting errors) and pinpointing a particular error process behind apparently adaptive mRNA anatomy is rarely straightforward. Understanding differences in the fitness costs associated with different types of translational error can help us devise critical tests that can implicate one error process to the exclusion of others. To this end, we present a model that captures distinct features of frameshifting cost and apply this to 641 prokaryotic genomes. We demonstrate that, although it is commonly assumed that the ribosome encounters an off-frame stop codon soon after the frameshift and costs of mis-elongation are therefore limited, genomes with high GC content typically incur much larger per-error costs. We go on to derive the prediction, unique to frameshifting errors, that differences in translational robustness between the 5' and 3' ends of genes should be less pronounced in genomes with higher GC content. This prediction we show to be correct. Surprisingly, this does not mean that GC-rich organisms necessarily carry a greater fitness burden as a consequence of accidental frameshifting. Indeed, increased per-error costs are often more than counterbalanced by lower predicted error rates owing to more diverse anticodon repertoires in GC-rich genomes. We therefore propose that selection on tRNA repertoires may operate to reduce frameshifting errors.
Original languageEnglish
Pages (from-to)636-645
Number of pages10
JournalGenome biology and evolution
Volume2
DOIs
Publication statusPublished - 5 Aug 2010

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Costs and Cost Analysis
genome
Genome
cost
Base Composition
fitness
prediction
stop codon
Anticodon
ribosomes
codons
Terminator Codon
Transfer RNA
Ribosomes
Codon
anatomy
Anatomy
organisms
Messenger RNA
gene

Cite this

Unique cost dynamics elucidate the role of frameshifting errors in promoting translational robustness. / Warnecke, Tobias; Huang, Y; Przytycka, T M; Hurst, Laurence D.

In: Genome biology and evolution, Vol. 2, 05.08.2010, p. 636-645.

Research output: Contribution to journalArticle

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