The gut fungus Basidiobolus ranarum has a large genome and different copy numbers of putatively functionally redundant elongation factor genes

Daniel A. Henk, Matthew C. Fisher

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

Fungal genomes range in size from 2.3 Mb for the microsporidian Encephalitozoon intestinalis up to 8000 Mb for Entomophaga aulicae, with a mean genome size of 37 Mb. Basidiobolus, a common inhabitant of vertebrate guts, is distantly related to all other fungi, and is unique in possessing both EF-1α and EFL genes. Using DNA sequencing and a quantitative PCR approach, we estimated a haploid genome size for Basidiobolus at 350 Mb. However, based on allelic variation, the nuclear genome is at least diploid, leading us to believe that the final genome size is at least 700 Mb. We also found that EFL was in three times the copy number of its putatively functionally overlapping paralog EF-1α. This suggests that gene or genome duplication may be an important feature of B. ranarum evolution, and also suggests that B. ranarum may have mechanisms in place that favor the preservation of functionally overlapping genes.
LanguageEnglish
Article numbere31268
Number of pages4
JournalPLoS ONE
Volume7
Issue number2
DOIs
StatusPublished - 17 Feb 2012

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Entomophthorales
Basidiobolus
Peptide Elongation Factors
Genome Size
Fungi
Peptide Elongation Factor 1
digestive system
Genes
Genome
fungi
genome
Encephalitozoon
Fungal Genome
Overlapping Genes
genes
Haploidy
Entomophaga aulicae
Diploidy
DNA Sequence Analysis
Vertebrates

Cite this

The gut fungus Basidiobolus ranarum has a large genome and different copy numbers of putatively functionally redundant elongation factor genes. / Henk, Daniel A.; Fisher, Matthew C.

In: PLoS ONE, Vol. 7, No. 2, e31268, 17.02.2012.

Research output: Contribution to journalArticle

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