The apportionment of dietary diversity in wildlife

Hannah K. Hoff, Bethan L. Littleford-Colquhoun, Rebecca Y. Kartzinel, Heidi M. Anderson, Chris Geremia, Lauren M. McGarvey, Carlisle Segal, Tyler R. Kartzinel

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Abstract

Evaluating species’ roles in food webs is critical for advancing ecological theories on competition, coexistence, and biodiversity but is complicated by pronounced dietary variability within species and overlap across species. We combined dietary DNA metabarcoding, GPS tracking, and a machine-learning algorithm to cluster and compare dietary profiles within and among five migratory large-herbivore species from Yellowstone National Park. Interspecific niche partitioning was weak, but statistically significant (PERMANOVA: pseudo-F4,498 = 14.7, R2 = 0.11, P ≤ 0.001), such that some diet profiles from different species were as similar as those from within one species. Instead of affirming species’ identity as a primary determinant of diet composition, we found three statistically different clusters of diet profiles—one concentrated on graminoids and forbs, another on forbs and deciduous shrubs, and a third on gymnosperms—each including samples from all herbivore species. Clusters did not reflect traditional diet classification schemes such as the grazer-browser continuum that is often used to distinguish species by percent grass consumption or use of grassland habitat in African savannas. Instead, clusters in Yellowstone reflected seasonal dietary variation within species that often equaled or exceeded niche differences between species, contributing to our growing understanding of why environmental variability may favor generalist foraging strategies at temperate latitudes, whereas specialized grazer and browser guilds appear to predominate in tropical savannas. Data-driven strategies that untangle complex trophic networks without relying on a priori groupings can offer new insights into wildlife diets, with potential applications in resource management and environmental monitoring.

Original languageEnglish
Article numbere2502691122
JournalProceedings of the National Academy of Sciences
Volume122
Issue number29
Early online date14 Jul 2025
DOIs
Publication statusPublished - 22 Jul 2025

Data Availability Statement

Illumina sequence data and sample metadata can be found on NCBI (112). Specimen data, the input FASTA file, and the output file for generating the local plant reference library are available on Dryad (113). Bioinformatic scripts for creating both global and local plant reference libraries, along with analysis code, have been deposited on Zenodo (114). Finally, the Local Plants of Yellowstone DNA barcode library is available on the Barcode of Life Datasystems (115)

Funding

We thank the National Park Service, Ecology Project International, Yellowstone Forever, and students and staff of Brown University for collecting and processing samples. We thank D. Polt, E. Atwood, and M. Florida for collecting specimens and M. Florida and C. Tulloss for illustrations. Funding was provided by NSF DEB-2046797 and OIA-2033823, and NPS Cooperative Research and Trainings Program grants P22AC00332-00 and P23AC00378. We thank Marcus Clauss and one anonymous reviewer for their helpful comments.

FundersFunder number
National Science FoundationDEB-2046797, OIA-2033823
NPSP23AC00378, P22AC00332-00

    Keywords

    • coexistence
    • DNA metabarcoding
    • foraging guilds
    • large-herbivore ecology
    • trophic niche

    ASJC Scopus subject areas

    • General

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