@inbook{1cf9634a8e794e799fca1f102e052542,
title = "Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis",
abstract = "Hi-C enables the characterization of the 0conformation of the genome in the three-dimensional nuclear space. This technique has revolutionized our ability to detect interactions between linearly distant genomic sites on a genome-wide scale. Here, we detail a protocol to carry out in situ Hi-C in plants and describe a straightforward bioinformatics pipeline for the analysis of such data, in particular for comparing samples from different organs or conditions.",
keywords = "Arabidopsis, Bioinformatics, Chromosome conformation, Differential interactions, Hi-C, Sequencing",
author = "{P{\'e}rez-de los Santos}, {Francisco J.} and Sotelo-Fonseca, {Jes{\'u}s Emiliano} and Am{\'e}rica Ram{\'i}rez-Colmenero and N{\"u}tzmann, {Hans Wilhelm} and Fernandez-Valverde, {Selene L.} and Katarzyna Oktaba",
note = "Funding Information: FJP-d, JES-F, and AR-C were funded by fellowships from the Consejo Nacional de Ciencia y Tecnolog{\'i}a (CONACYT). N-HW, SF-V, and KO are funded by the Newton Advanced Fellowship (No. NAF\R1\180303) awarded to SF-V. KO is supported by the Consejo Nacional de Ciencia y Tecnolog{\'i}a (CONACYT, CB-2016-01/285847). ",
year = "2022",
month = jul,
day = "12",
doi = "10.1007/978-1-0716-2429-6_13",
language = "English",
isbn = "9781071624289",
series = "Methods in Molecular Biology",
publisher = "Humana Press",
pages = "217--247",
editor = "A. Pereira-Santana and Gamboa-Tuz, {S. D.} and Rodr{\'i}guez-Zapata, {L. C.}",
booktitle = "Plant Comparative Genomics",
address = "USA United States",
}