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Metagenome‐assembled genome of the glacier alga Ancylonema yields insights into the evolution of streptophyte life on ice and land

Alexander M. C. Bowles, Tom A. Williams, Philip C. J. Donoghue, Douglas A. Campbell, Christopher J. Williamson

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Abstract

Summary
-Contemporary glaciers are inhabited by streptophyte algae that balance photosynthesis and growth with tolerance of low temperature, desiccation and UV radiation. These same environmental challenges have been hypothesised as the driving force behind the evolution of land plants from streptophyte algal ancestors in the Cryogenian (720–635 million years ago).
-We sequenced, assembled and analysed the metagenome-assembled genome of the glacier alga Ancylonema nordenskiöldii to investigate its adaptations to life in ice, and whether this represents a vestige of Cryogenian exaptations.
-Phylogenetic analysis confirms the placement of glacier algae within the sister lineage to land plants, Zygnematophyceae. The metagenome-assembled genome is characterised by an expansion of genes involved in tolerance of high irradiance and UV light, while lineage-specific diversification is linked to the novel screening pigmentation of glacier algae. We found no support for the hypothesis of a common genomic basis for adaptations to ice and to land in streptophytes. Comparative genomics revealed that the reductive morphological evolution in the ancestor of Zygnematophyceae was accompanied by reductive genome evolution.
-This first genome-scale data for glacier algae suggests an Ancylonema-specific adaptation to the cryosphere, and sheds light on the genome evolution of land plants and Zygnematophyceae.
Original languageEnglish
Pages (from-to)1629-1643
JournalNew Phytologist
Volume244
Issue number4
Early online date6 Jun 2024
DOIs
Publication statusPublished - 16 Oct 2024

Data Availability Statement

The Ancylonema nordenskiöldii MAG, associated proteins, and genes used to infer species phylogenies were deposited (Figshare: doi: 10.6084/m9.figshare.25305640), whilst raw Illumina, PacBio and RNA sequencing data were deposited to NCBI (PRJNA1103419). Other data supporting the findings of the paper are available in the Supporting Information.

Funding

We wish to acknowledge funding from the Leverhulme Trust (RPG-2020-199 ‘iDAPT’ project to CW, DC, PD, TW; RF-2022-167 to PD); the Natural Environment Research Council (NE/P013678/1 to PD); part of the Biosphere Evolution, Transitions and Resilience (BETR) programme cofunded by the Natural Science Foundation of China (NSFC); the John Templeton Foundation (62220 to PD, TW; the opinions expressed here do not necessarily reflect the views of the John Templeton Foundation); the Gordon and Betty Moore Foundation (GBMF9741 to PD, TW) and a University Research Fellowship to TW (URF\R\201024).

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