Metabolic insights into microbially induced calcite formation by Bacillaceae for application in bio-based construction materials

Michael Seidel, Charlotte Hamley-Bennett, Bianca Reeksting, Manpreet Bagga, Lukas Hellmann, Timothy Hoffmann, Christiane Kraemer, Irina Dana Ofiteru, Kevin Paine, Susanne Gebhard

Research output: Contribution to journalArticlepeer-review

7 Citations (SciVal)

Abstract

Microbially induced calcite precipitation (MICP) offers promising solutions for sustainable, low-cement infrastructure materials. While it is known how urea catabolism leads to biomineralisation, the non-ureolytic pathways of MICP are less clear. This limits the use of the latter in biotechnology, despite its clear benefit of avoiding toxic ammonia release. To address this knowledge gap, the present study explored the interdependence between carbon source utilisation and non-ureolytic MICP. We show that acetate can serve as the carbon source driving calcite formation in several environmental Bacillaceae isolates. This effect was particularly clear in a Solibacillus silvestris strain, which could precipitate almost all provided calcium when provided with a 2:1 acetate-to-calcium molar ratio, and we show that this process was independent of active cell growth. Genome sequencing and gene expression analyses revealed an apparent link between acetate catabolism and calcite precipitation in this species, suggesting MICP may be a calcium stress response. Development of a simple genetic system for S. silvestris led to the deletion of a proposed calcium binding protein, although this showed minimal effects on MICP. Taken together, this study provides insights into the physiological processes leading to non-ureolytic MICP, paving the way for targeted optimisation of biomineralisation for sustainable materials development.

Original languageEnglish
Article numbere70093
Number of pages19
JournalEnvironmental Microbiology
Volume27
Issue number4
Early online date2 Apr 2025
DOIs
Publication statusPublished - 30 Apr 2025

Data Availability Statement

All numerical data underpinning the graphs shown in the figures are available in Table S6.

Acknowledgements

Open Access funding enabled and organized by Projekt DEAL at Johannes Gutenberg University Mainz.

Funding

This work was supported in part by funding from the Engineering and Physical Sciences Research Council (EPSRC, UK) through the Resilient Materials for Life (RM4L) (EP/P02081X/1) project and the Engineering Microbial\u2010Induced Carbonate Precipitation via Meso\u2010Scale Simulations (eMICP) (EP/S013997/1; EP/S013997) project. Funding: Funding: This work was supported in part by funding from the Engineering and Physical Sciences Research Council (EPSRC, UK) through the Resilient Materials for Life (RM4L) (EP/P02081X/1) project and the Engineering Microbial-Induced Carbonate Precipitation via Meso-Scale Simulations (eMICP) (EP/S013997/1; EP/S013997) project. This work was supported in part by funding from the Engineering and Physical Sciences Research Council (EPSRC, UK) through the Resilient Materials for Life (RM4L) (EP/P02081X/1) project and the Engineering Microbial-Induced Carbonate Precipitation via Meso-Scale Simulations (eMICP) (EP/S013997/1; EP/S013997) project. The authors gratefully acknowledge the Technical Staff within the Life Sciences Department and the Department of Architecture and Civil Engineering at the University of Bath for technical support and assistance in this work. We also thank Yannic Zettelmeyer at Johannes Gutenberg University Mainz for genome assembly from the long and short read data as part of his student research project. Open Access funding enabled and organized by Projekt DEAL. This work was supported in part by funding from the Engineering and Physical Sciences Research Council (EPSRC, UK) through the Resilient Materials for Life (RM4L) (EP/P02081X/1) project and the Engineering Microbial\u2010Induced Carbonate Precipitation via Meso\u2010Scale Simulations (eMICP) (EP/S013997/1; EP/S013997) project. The authors gratefully acknowledge the Technical Staff within the Life Sciences Department and the Department of Architecture and Civil Engineering at the University of Bath for technical support and assistance in this work. We also thank Yannic Zettelmeyer at Johannes Gutenberg University Mainz for genome assembly from the long and short read data as part of his student research project. Open Access funding enabled and organized by Projekt DEAL.

FundersFunder number
Engineering and Physical Sciences Research Council
Department of Architecture and Civil Engineering
RM4LEP/P02081X/1, EP/S013997/1, EP/S013997

Keywords

  • MICP
  • acetate metabolism
  • calcium detoxification
  • self-healing concrete

ASJC Scopus subject areas

  • Microbiology
  • Ecology, Evolution, Behavior and Systematics

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