Global Availability of Plant DNA Barcodes as Genomic Resources to Support Basic and Policy‐Relevant Biodiversity Research

Tyler R. Kartzinel, Hannah K. Hoff, Timothy J. Divoll, Bethan L. Littleford‐Colquhoun, Heidi Anderson, Mary K. Burak, Maria L. Kuzmina, Paul M. Musili, Haldre Rogers, Alejandra J. Troncoso, Rebecca Y. Kartzinel

Research output: Contribution to journalArticlepeer-review

Abstract

Genetic technologies such as DNA barcoding make it easier and less expensive to monitor biodiversity and its associated ecosystem services, particularly in biodiversity hotspots where traditional assessments are challenging. Successful use of these data-driven technologies, however, requires access to appropriate reference data. We reviewed the >373,584 reference plant DNA barcodes in public repositories and found that they cumulatively cover a remarkable quarter of the ~435,000 extant land plant species (Embryophyta). Nevertheless, coverage gaps in tropical biodiversity hotspots reflect well-documented biases in biodiversity science – most reference specimens originated in the Global North. Currently, at least 17% of plant families lack any reference barcode data whatsoever, affecting tropical and temperate regions alike. Investigators often emphasise the importance of marker choice and the need to ensure protocols are technically capable of detecting and identifying a broad range of taxa. Yet persistent geographic and taxonomic gaps in the reference datasets show that these protocols rely upon risk undermining all downstream applications of the strategy, ranging from basic biodiversity monitoring to policy-relevant objectives – such as the forensic authentication of materials in illegal trade. Future networks of investigators could work strategically to improve data coverage, which will be essential in global efforts to conserve biodiversity while advancing more fair and equitable access to benefits arising from genetic resources.

Original languageEnglish
Article numbere17712
JournalMolecular Ecology
Volume34
Issue number7
Early online date28 Feb 2025
DOIs
Publication statusE-pub ahead of print - 28 Feb 2025

Data Availability Statement

All data tables required to complete the analyses are included in Datasets S1–S4 and the code for analyses is detailed in a published Quarto Code Book (https://trklab-metabarcoding.github.io/MolEco-MEC-24-1288/). Source code is available in a corresponding GitHub repository (https://github.com/trklab-metabarcoding/MolEco-MEC-24-1288).

Funding

This study was supported by Division of Environmental Biology (1930820, 2026294, 2046797), Office of Integrative Activities (2033823), National Park Service (P22AC00332, P23AC00378). We thank all who contribute to the growth of publicly available, expert-verified plant DNA barcodes. We acknowledge NSF DEB-2046797, DEB-2026294, DEB-1930820 and OIA-2033823, as well as the National Park Service Cooperative Research and Training Program P22AC00332 and P23AC00378.

FundersFunder number
National Science FoundationDEB‐2046797, DEB‐2026294, DEB‐1930820, 2033823
Division of Environmental Biology2026294, 2046797, 1930820, 2033823
National Park ServiceP23AC00378, P22AC00332

    Keywords

    • Convention on Biological Diversity
    • DNA metabarcoding
    • Nagoya Protocol
    • benefits sharing
    • digital sequence information
    • museums

    ASJC Scopus subject areas

    • Ecology, Evolution, Behavior and Systematics
    • Genetics

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