Experimental and computational biophysics to identify vasodilator drugs targeted at TRPV2 using agonists based on the probenecid scaffold

Èric Catalina-Hernández, Mario López-Martín, David Masnou-Sánchez, Marco Martins, Victor A. Lorenz-Fonfria, Francesc Jiménez-Altayó, Ute A. Hellmich, Hitoshi Inada, Antonio Alcaraz, Yuji Furutani, Alfons Nonell-Canals, Jose Luis Vázquez-Ibar, Carmen Domene, Rachelle Gaudet, Alex Perálvarez-Marín

Research output: Contribution to journalArticlepeer-review

2 Citations (SciVal)

Abstract

TRP channels are important pharmacological targets in physiopathology. TRPV2 plays distinct roles in cardiac and neuromuscular function, immunity, and metabolism, and is associated with pathologies like muscular dystrophy and cancer. However, TRPV2 pharmacology is unspecific and scarce at best. Using in silico similarity-based chemoinformatics we obtained a set of 270 potential hits for TRPV2 categorized into families based on chemical nature and similarity. Docking the compounds on available rat TRPV2 structures allowed the clustering of drug families in specific ligand binding sites. Starting from a probenecid docking pose in the piperlongumine binding site and using a Gaussian accelerated molecular dynamics approach we have assigned a putative probenecid binding site. In parallel, we measured the EC50 of 7 probenecid derivatives on TRPV2 expressed in Pichia pastoris using a novel medium-throughput Ca2+ influx assay in yeast membranes together with an unbiased and unsupervised data analysis method. We found that 4-(piperidine-1-sulfonyl)-benzoic acid had a better EC50 than probenecid, which is one of the most specific TRPV2 agonists to date. Exploring the TRPV2-dependent anti-hypertensive potential in vivo, we found that 4-(piperidine-1-sulfonyl)-benzoic acid shows a sex-biased vasodilator effect producing larger vascular relaxations in female mice. Overall, this study expands the pharmacological toolbox for TRPV2, a widely expressed membrane protein and orphan drug target.

Original languageEnglish
Pages (from-to)473-482
Number of pages10
JournalComputational and Structural Biotechnology Journal
Volume23
Early online date29 Dec 2023
DOIs
Publication statusE-pub ahead of print - 29 Dec 2023

Funding

Authors acknowledge financial support by the Spanish Government MCIN/AEI/ 10.13039/501100011033 (Project PID2020–120222GB-I00 to A.P.-M.), Ministerio de Universidades Margarita Salas Award (MGSD2021-10 to M.L.-M.), Universitat Autònoma De Barcelona Predoctoral Fellowship (B21P0033 to E.C.-H.), the Royal Society of Chemistry for Financial Support through a RS International Exchanges award (IES\R3\193089 to C.D.), and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) through the collaborative research center 1507 “Membrane-associated Protein Assemblies, Machineries, and Supercomplexes” – Project ID 450648163 (to UAH) and the Cluster of Excellence “Balance of the Microverse” EXC 2051 – Project-ID 390713860 (to UAH). A detailed description is provided in the Supplementary Material. Authors acknowledge financial support by the Spanish Government MCIN/AEI/ 10.13039/501100011033 (Project PID2020–120222GB-I00 to A.P.-M.), Ministerio de Universidades Margarita Salas Award ( MGSD2021-10 to M.L.-M.), Universitat Autònoma De Barcelona Predoctoral Fellowship ( B21P0033 to E.C.-H.), the Royal Society of Chemistry for Financial Support through a RS International Exchanges award ( IES\R3\193089 to C.D.), and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) through the collaborative research center 1507 “Membrane-associated Protein Assemblies, Machineries, and Supercomplexes” – Project ID 450648163 (to UAH) and the Cluster of Excellence “Balance of the Microverse” EXC 2051 – Project-ID 390713860 (to UAH).

FundersFunder number
Ministerio de Universidades Margarita Salas AwardMGSD2021-10, B21P0033
Royal SocietyIES\R3\193089
Deutsche Forschungsgemeinschaft390713860, 450648163

    Keywords

    • Biophysics
    • Cardiovascular
    • Computational biology
    • Docking
    • Drug discovery
    • Ion channels
    • Membrane proteins
    • Pharmacology
    • Structural biology
    • TRP channels
    • TRPV2

    ASJC Scopus subject areas

    • Biotechnology
    • Biophysics
    • Structural Biology
    • Biochemistry
    • Genetics
    • Computer Science Applications

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