Evaluation of metagenomic, 16S rRNA gene and ultra-plexed PCR-based sequencing approaches for profiling antimicrobial resistance gene and bacterial taxonomic composition of polymicrobial samples

K K Chau; W Matlock; B Constantinides; S Lipworth; L Newbold; H Tipper; T Goodall; H Brett; J Hughes; D W Crook; D W Eyre; D S Read; A S Walker; N Stoesser

doi:10.1101/2022.05.12.491637

Evaluation of metagenomic, 16S rRNA gene and ultra-plexed PCR-based sequencing approaches for profiling antimicrobial resistance gene and bacterial taxonomic composition of polymicrobial samples

K K Chau, W Matlock, B Constantinides, S Lipworth, L Newbold, H Tipper, T Goodall, H Brett, J Hughes, D W Crook, D W Eyre, D S Read, A S Walker, N Stoesser

Department of Life Sciences

University of Oxford

Research output: Working paper / Preprint › Preprint

Original language	English
Publisher	bioRxiv
DOIs	https://doi.org/10.1101/2022.05.12.491637
Publication status	Published - May 2022

Publication series

Name	bioRxiv
Publisher	Cold Spring Harbor Laboratory Press

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10.1101/2022.05.12.491637Licence: CC BY

Cite this

Chau, K. K., Matlock, W., Constantinides, B., Lipworth, S., Newbold, L., Tipper, H., Goodall, T., Brett, H., Hughes, J., Crook, D. W., Eyre, D. W., Read, D. S., Walker, A. S., & Stoesser, N. (2022). Evaluation of metagenomic, 16S rRNA gene and ultra-plexed PCR-based sequencing approaches for profiling antimicrobial resistance gene and bacterial taxonomic composition of polymicrobial samples. (bioRxiv). bioRxiv. https://doi.org/10.1101/2022.05.12.491637

Chau, KK, Matlock, W, Constantinides, B, Lipworth, S, Newbold, L, Tipper, H, Goodall, T, Brett, H, Hughes, J, Crook, DW, Eyre, DW, Read, DS, Walker, AS & Stoesser, N 2022 'Evaluation of metagenomic, 16S rRNA gene and ultra-plexed PCR-based sequencing approaches for profiling antimicrobial resistance gene and bacterial taxonomic composition of polymicrobial samples' bioRxiv, bioRxiv. https://doi.org/10.1101/2022.05.12.491637

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