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Bisphosphine ligand conformer selection to enhance descriptor database representation: improving statistical modelling outcomes

  • Jamie A. Cadge
  • , Sierra D. Hart
  • , Richard C. Walroth
  • , Kyle A. Mack
  • , Matthew S. Sigman
  • University of Utah, College Of Science
  • Genentech Inc

Research output: Contribution to journalArticlepeer-review

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Abstract

A foundational consideration in the development of computationally derived molecular feature libraries is the generation and selection of conformers. It has been shown that several feature values have a degree of conformer depencency – which may have significant mechanistic implications, partiticulary in the field of homogeneous enantioselective catalysis. However, the computational cost of calculating conformers often prohibits this analysis from being performed, especially when large flexible systems are involved. We report here a practical, chemically-intutive conformer selection tool for bisphosphine-ligated palladium(ii) dichloride complexes that provide a good balance between representation and computational cost. Conformer-weighted features generated from this method were applied to two previous statistical modelling case studies, where weighted features improve model quality with respect to predictive power. This selection methodology has the potential to be applied to a range of complex molecular systems beyond bisphosphine-ligated organometallic complexes.

Original languageEnglish
JournalChemical Science
Early online date29 Sept 2025
DOIs
Publication statusE-pub ahead of print - 29 Sept 2025

Data Availability Statement

Data for this article, including Python code used for data analysis, conformer selection and modelling, are available on GitHub in this repository: https://github.com/SigmanGroup/BisphosphineConformerSelection. DFT calculation files used in both modelling case studies are available on Zenodo: https://doi.org/10.5281/zenodo.15690854.

Supplementary information is available containing full calculation, modelling details and additional plots depicting conformer selection. See DOI: https://doi.org/10.1039/d5sc04691b.

Acknowledgements

The support and resources from the Center for High Performance Computing (CHPC) at the University of Utah are gratefully acknowledged. We thank Dr Beck Miller for their helpful insights into non-linear modelling techniques.

Funding

We acknowledge the financial support from the NSF under the CCI Center for Computer Assisted Synthesis (C-CAS) (CHE-2202693) for work completed in the Sigman lab.

ASJC Scopus subject areas

  • General Chemistry

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