TY - JOUR
T1 - Author Correction
T2 - MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants (Nature Communications, (2022), 13, 1, (1908), 10.1038/s41467-022-29438-7)
AU - MiDAS Global Consortium
AU - Dueholm, Morten Kam Dahl
AU - Nierychlo, Marta
AU - Andersen, Kasper Skytte
AU - Rudkjøbing, Vibeke
AU - Knutsson, Simon
AU - Arriaga, Sonia
AU - Bakke, Rune
AU - Boon, Nico
AU - Bux, Faizal
AU - Christensson, Magnus
AU - Chua, Adeline Seak May
AU - Curtis, Thomas P.
AU - Cytryn, Eddie
AU - Erijman, Leonardo
AU - Etchebehere, Claudia
AU - Fatta-Kassinos, Despo
AU - Frigon, Dominic
AU - Garcia-Chaves, Maria Carolina
AU - Gu, April Z.
AU - Horn, Harald
AU - Jenkins, David
AU - Kreuzinger, Norbert
AU - Kumari, Sheena
AU - Lanham, Ana
AU - Law, Yingyu
AU - Leiknes, Tor Ove
AU - Morgenroth, Eberhard
AU - Muszyński, Adam
AU - Petrovski, Steve
AU - Pijuan, Maite
AU - Pillai, Suraj Babu
AU - Reis, Maria A.M.
AU - Rong, Qi
AU - Rossetti, Simona
AU - Seviour, Robert
AU - Tooker, Nick
AU - Vainio, Pirjo
AU - van Loosdrecht, Mark
AU - Vikraman, R.
AU - Wanner, Jiří
AU - Weissbrodt, David
AU - Wen, Xianghua
AU - Zhang, Tong
AU - Nielsen, Per H.
AU - Albertsen, Mads
AU - Nielsen, Per Halkjær
PY - 2022/12/31
Y1 - 2022/12/31
N2 - The original version of this Article included the following errors in reference citations: It incorrectly cited ‘Thompson, L. R. et al. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551, 457–463 (2017)’ and ‘Peterson, J. et al. The NIH Human Microbiome Project. Genome Res. 19, 2317–2323 (2009)’ as Refs 18 and 19 in the Introduction, at ‘In the MiDAS project, we have thoroughly evaluated different wet-lab protocols, e.g., DNA extraction methods, and choice of amplicon primers and amplicon library preparation17-19.’ The two references have been removed from the correct version. It incorrectly cited ‘Zheng, M. et al. Active ammonia-oxidizing bacteria and archaea in wastewater treatment systems. J. Environ. Sci. 102, 273–282 (2021)’ and ‘Thompson, L. R. et al. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551, 457–463 (2017)’ as Refs 42 and 18 in the last paragraph of Results and Discussion, at ‘In the Danish WWTPs, we have successfully done this for groups in the Acidobacteriota42 based on the MiDAS 3 database18.’ The correct version replaces the first reference with ‘Kristensen, J. M., Singleton, C., Clegg, L.-A., Petriglieri, F. and Nielsen, P. H. High diversity and functional potential of undescribed “Acidobacteriota” in Danish wastewater treatment plants. Front. Microbiol. 12, 906 (2021)’ and the second reference with Ref. 16. It incorrectly cited ‘Rosselló-Mora, R. A., Wagner, M., Amann, R. and Schleifer, K. H. The abundance of Zoogloea ramigera in sewage treatment plants. Appl. Environ. Microbiol. 61, 702–707 (1995)’ as Ref. 43 in the last paragraph of Results and Discussion, at ‘Our recent retrieval of more than 1000 high-quality MAGs from Danish WWTPs with advanced process design is also an important step to link identity to function43.’ The correct version replaces this reference with ‘Singleton, C. M. et al. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. Nature Communications 12, 2009 (2021)’. It incorrectly cited ‘Nierychlo, M. et al. Candidatus Amarolinea and Candidatus Microthrix are mainly responsible for filamentous bulking in Danish municipal wastewater treatment plants. Front. Microbiol. 11, 1214 (2020)’, ‘Klindworth, A. et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41, 1–11 (2013)’ and ‘Lane, D. J. 16S/23S rRNA sequencing In Nucleic Acid Techniques in Bacterial Systematics (eds Stackebrandt, E. and Goodfellow, M.) (Wiley, 1991)’ as Refs 44–46 in the last paragraph of Results and Discussion, at ‘These MAGs may also form the basis for further studies to link identity and function, e.g., by applying metatranscriptomics44 and other in situ techniques such as FISH combined with Raman45,46.’ The correct version replaces these references with ‘Herold, M. et al. Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature Communications 11, 5281 (2020)’, ‘Fernando, E. Y. et al. Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman–FISH. ISME J. 13, 1933–1946 (2019)’ and ‘Petriglieri, F. et al. Quantification of Biologically and Chemically Bound Phosphorus in Activated Sludge from Full-Scale Plants with Biological P-Removal. Environ. Sci. Technol. 56, 5132–5140 (2022)’. The errors have been corrected in the PDF and HTML versions of the Article.
AB - The original version of this Article included the following errors in reference citations: It incorrectly cited ‘Thompson, L. R. et al. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551, 457–463 (2017)’ and ‘Peterson, J. et al. The NIH Human Microbiome Project. Genome Res. 19, 2317–2323 (2009)’ as Refs 18 and 19 in the Introduction, at ‘In the MiDAS project, we have thoroughly evaluated different wet-lab protocols, e.g., DNA extraction methods, and choice of amplicon primers and amplicon library preparation17-19.’ The two references have been removed from the correct version. It incorrectly cited ‘Zheng, M. et al. Active ammonia-oxidizing bacteria and archaea in wastewater treatment systems. J. Environ. Sci. 102, 273–282 (2021)’ and ‘Thompson, L. R. et al. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551, 457–463 (2017)’ as Refs 42 and 18 in the last paragraph of Results and Discussion, at ‘In the Danish WWTPs, we have successfully done this for groups in the Acidobacteriota42 based on the MiDAS 3 database18.’ The correct version replaces the first reference with ‘Kristensen, J. M., Singleton, C., Clegg, L.-A., Petriglieri, F. and Nielsen, P. H. High diversity and functional potential of undescribed “Acidobacteriota” in Danish wastewater treatment plants. Front. Microbiol. 12, 906 (2021)’ and the second reference with Ref. 16. It incorrectly cited ‘Rosselló-Mora, R. A., Wagner, M., Amann, R. and Schleifer, K. H. The abundance of Zoogloea ramigera in sewage treatment plants. Appl. Environ. Microbiol. 61, 702–707 (1995)’ as Ref. 43 in the last paragraph of Results and Discussion, at ‘Our recent retrieval of more than 1000 high-quality MAGs from Danish WWTPs with advanced process design is also an important step to link identity to function43.’ The correct version replaces this reference with ‘Singleton, C. M. et al. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. Nature Communications 12, 2009 (2021)’. It incorrectly cited ‘Nierychlo, M. et al. Candidatus Amarolinea and Candidatus Microthrix are mainly responsible for filamentous bulking in Danish municipal wastewater treatment plants. Front. Microbiol. 11, 1214 (2020)’, ‘Klindworth, A. et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41, 1–11 (2013)’ and ‘Lane, D. J. 16S/23S rRNA sequencing In Nucleic Acid Techniques in Bacterial Systematics (eds Stackebrandt, E. and Goodfellow, M.) (Wiley, 1991)’ as Refs 44–46 in the last paragraph of Results and Discussion, at ‘These MAGs may also form the basis for further studies to link identity and function, e.g., by applying metatranscriptomics44 and other in situ techniques such as FISH combined with Raman45,46.’ The correct version replaces these references with ‘Herold, M. et al. Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature Communications 11, 5281 (2020)’, ‘Fernando, E. Y. et al. Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman–FISH. ISME J. 13, 1933–1946 (2019)’ and ‘Petriglieri, F. et al. Quantification of Biologically and Chemically Bound Phosphorus in Activated Sludge from Full-Scale Plants with Biological P-Removal. Environ. Sci. Technol. 56, 5132–5140 (2022)’. The errors have been corrected in the PDF and HTML versions of the Article.
UR - http://www.scopus.com/inward/record.url?scp=85133899342&partnerID=8YFLogxK
U2 - 10.1038/s41467-022-31423-z
DO - 10.1038/s41467-022-31423-z
M3 - Comment/debate
C2 - 35821016
AN - SCOPUS:85133899342
SN - 2041-1723
VL - 13
JO - Nature Communications
JF - Nature Communications
IS - 1
M1 - 4017
ER -