A test of the null model for 5 ' UTR evolution based on GC content

M Reuter, J Engelstadter, P Fontanillas, L D Hurst

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

Eukaryotic mRNAs are headed by a stretch of noncoding sequence, the 5' untranslated region (UTR). It has been proposed that the length of 5' UTRs is selectively neutral and evolves under a process of stochastic destruction and recruitment of core promoter elements, combined with selection against the premature initiation of translation. We test this null model by investigating whether 5' UTR length varies with genomic GC content, an implicit prediction of the model. Using simulations, we show that the null model predicts a positive relationship between GC content and UTR length for genes regulated by a TATA box. Although this prediction is borne out qualitatively in genomic data from yeast, fruit flies, and humans, we find marked quantitative discrepancies. We conclude that UTR length may be shaped to some degree by the forces considered in the null model but that the model fails to provide a complete explanation for UTR length evolution.
Original languageEnglish
Pages (from-to)801-804
Number of pages4
JournalMolecular Biology and Evolution
Volume25
Issue number5
DOIs
Publication statusPublished - 2008

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Untranslated Regions
5' Untranslated Regions
5' untranslated regions
Base Composition
Stochastic Processes
TATA Box
testing
genomics
Diptera
Fruit
TATA box
Yeasts
prediction
stochastic processes
fruit flies
Messenger RNA
translation (genetics)
yeast
fruit
Genes

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A test of the null model for 5 ' UTR evolution based on GC content. / Reuter, M; Engelstadter, J; Fontanillas, P; Hurst, L D.

In: Molecular Biology and Evolution, Vol. 25, No. 5, 2008, p. 801-804.

Research output: Contribution to journalArticle

Reuter, M ; Engelstadter, J ; Fontanillas, P ; Hurst, L D. / A test of the null model for 5 ' UTR evolution based on GC content. In: Molecular Biology and Evolution. 2008 ; Vol. 25, No. 5. pp. 801-804.
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