A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle

Nivedita Awasthi Mishra, Cord Droegemueller, Vidhya Jagannathan, Irene Keller, Daniel Wuthrich, Remy Bruggmann, Julia Beck, Ekkehard Schuetz, Bertram Brenig, Steffi Demmel, Simon Moser, Heidi Signer-Hasler, Aldona Pienkowska-Schelling, Claude Schelling, Marcos Sande, Ronald Rongen, Stefan Rieder, Robert N. Kelsh, Nadia Mercader, Tosso Leeb

Research output: Contribution to journalArticle

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Abstract

Belted cattle have a circular belt of unpigmented hair and skin around their midsection. The belt is inherited as a monogenic autosomal dominant trait. We mapped the causative variant to a 37 kb segment on bovine chromosome 3. Whole genome sequence data of 2 belted and 130 control cattle yielded only one private genetic variant in the critical interval in the two belted animals. The belt-associated variant was a copy number variant (CNV) involving the quadruplication of a 6 kb non-coding sequence located approximately 16 kb upstream of the TWIST2 gene. Increased copy numbers at this CNV were strongly associated with the belt phenotype in a cohort of 333 cases and 1322 controls. We hypothesized that the CNV causes aberrant expression of TWIST2 during neural crest development, which might negatively affect melanoblasts. Functional studies showed that ectopic expression of bovine TWIST2 in neural crest in transgenic zebrafish led to a decrease in melanocyte numbers. Our results thus implicate an unsuspected involvement of TWIST2 in regulating pigmentation and reveal a non-coding CNV underlying a captivating Mendelian character.
Original languageEnglish
Article numbere0180170
Number of pages16
JournalPLoS ONE
Volume12
Issue number6
DOIs
Publication statusPublished - 28 Jun 2017

Fingerprint

melanocytes
5' Flanking Region
Melanocytes
Genes
neural crest
Neural Crest
cattle
genes
Chromosomes, Human, Pair 3
Pigmentation
Zebrafish
Chromosomes
Danio rerio
skin (animal)
pigmentation
Hair
hairs
Skin
Animals
genetically modified organisms

Cite this

Awasthi Mishra, N., Droegemueller, C., Jagannathan, V., Keller, I., Wuthrich, D., Bruggmann, R., ... Leeb, T. (2017). A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle. PLoS ONE, 12(6), [e0180170]. https://doi.org/10.1101/077065, https://doi.org/10.1371/journal.pone.0180170

A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle. / Awasthi Mishra, Nivedita; Droegemueller, Cord; Jagannathan, Vidhya; Keller, Irene; Wuthrich, Daniel; Bruggmann, Remy; Beck, Julia; Schuetz, Ekkehard; Brenig, Bertram; Demmel, Steffi; Moser, Simon; Signer-Hasler, Heidi; Pienkowska-Schelling, Aldona; Schelling, Claude; Sande, Marcos; Rongen, Ronald; Rieder, Stefan; Kelsh, Robert N.; Mercader, Nadia; Leeb, Tosso.

In: PLoS ONE, Vol. 12, No. 6, e0180170, 28.06.2017.

Research output: Contribution to journalArticle

Awasthi Mishra, N, Droegemueller, C, Jagannathan, V, Keller, I, Wuthrich, D, Bruggmann, R, Beck, J, Schuetz, E, Brenig, B, Demmel, S, Moser, S, Signer-Hasler, H, Pienkowska-Schelling, A, Schelling, C, Sande, M, Rongen, R, Rieder, S, Kelsh, RN, Mercader, N & Leeb, T 2017, 'A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle', PLoS ONE, vol. 12, no. 6, e0180170. https://doi.org/10.1101/077065, https://doi.org/10.1371/journal.pone.0180170
Awasthi Mishra, Nivedita ; Droegemueller, Cord ; Jagannathan, Vidhya ; Keller, Irene ; Wuthrich, Daniel ; Bruggmann, Remy ; Beck, Julia ; Schuetz, Ekkehard ; Brenig, Bertram ; Demmel, Steffi ; Moser, Simon ; Signer-Hasler, Heidi ; Pienkowska-Schelling, Aldona ; Schelling, Claude ; Sande, Marcos ; Rongen, Ronald ; Rieder, Stefan ; Kelsh, Robert N. ; Mercader, Nadia ; Leeb, Tosso. / A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle. In: PLoS ONE. 2017 ; Vol. 12, No. 6.
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abstract = "Belted cattle have a circular belt of unpigmented hair and skin around their midsection. The belt is inherited as a monogenic autosomal dominant trait. We mapped the causative variant to a 37 kb segment on bovine chromosome 3. Whole genome sequence data of 2 belted and 130 control cattle yielded only one private genetic variant in the critical interval in the two belted animals. The belt-associated variant was a copy number variant (CNV) involving the quadruplication of a 6 kb non-coding sequence located approximately 16 kb upstream of the TWIST2 gene. Increased copy numbers at this CNV were strongly associated with the belt phenotype in a cohort of 333 cases and 1322 controls. We hypothesized that the CNV causes aberrant expression of TWIST2 during neural crest development, which might negatively affect melanoblasts. Functional studies showed that ectopic expression of bovine TWIST2 in neural crest in transgenic zebrafish led to a decrease in melanocyte numbers. Our results thus implicate an unsuspected involvement of TWIST2 in regulating pigmentation and reveal a non-coding CNV underlying a captivating Mendelian character.",
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AU - Keller, Irene

AU - Wuthrich, Daniel

AU - Bruggmann, Remy

AU - Beck, Julia

AU - Schuetz, Ekkehard

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AU - Demmel, Steffi

AU - Moser, Simon

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AU - Sande, Marcos

AU - Rongen, Ronald

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AB - Belted cattle have a circular belt of unpigmented hair and skin around their midsection. The belt is inherited as a monogenic autosomal dominant trait. We mapped the causative variant to a 37 kb segment on bovine chromosome 3. Whole genome sequence data of 2 belted and 130 control cattle yielded only one private genetic variant in the critical interval in the two belted animals. The belt-associated variant was a copy number variant (CNV) involving the quadruplication of a 6 kb non-coding sequence located approximately 16 kb upstream of the TWIST2 gene. Increased copy numbers at this CNV were strongly associated with the belt phenotype in a cohort of 333 cases and 1322 controls. We hypothesized that the CNV causes aberrant expression of TWIST2 during neural crest development, which might negatively affect melanoblasts. Functional studies showed that ectopic expression of bovine TWIST2 in neural crest in transgenic zebrafish led to a decrease in melanocyte numbers. Our results thus implicate an unsuspected involvement of TWIST2 in regulating pigmentation and reveal a non-coding CNV underlying a captivating Mendelian character.

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