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  • Edward Feil
2020

Enantiomeric profiling of quinolones and quinolones resistance gene qnrS in European wastewaters

Castrignanò, E., Yang, Z., Feil, E. J., Bade, R., Castiglioni, S., Causanilles, A., Gracia-Lor, E., Hernandez, F., Plósz, B. G., Ramin, P., Rousis, N. I., Ryu, Y., Thomas, K. V., de Voogt, P., Zuccato, E. & Kasprzyk-Hordern, B., 15 May 2020, In : Water Research. 175, p. 115653 115653.

Research output: Contribution to journalArticle

High-resolution sweep metagenomics using fast probabilistic inference

Mäklin, T., Kallonen, T., David, S., Boinett, C. J., Pascoe, B., Méric, G., Aanensen, D. M., Feil, E. J., Baker, S., Parkhill, J., Sheppard, S. K., Corander, J. & Honkela, A., 30 Jan 2020, In : Wellcome Open Research. 5, p. 14

Research output: Contribution to journalArticle

Open Access

Monitoring Infectious Diseases in Near-Real-Time for Rapid Outbreak Response

Boxall-Clasby, J., Kasprzyk-Hordern, B., Estrela, P., Feil, E. & Barden, R., 2020, (In preparation).

Research output: Contribution to conferencePoster

The role of stereochemistry of antibiotic agents in the development of antibiotic resistance in the environment

Elder, F. C. T., Feil, E. J., Snape, J. N., Gaze, W. H. & Kasprzyk-Hordern, B. A., 30 Jun 2020, In : Environment International. 139, 105681.

Research output: Contribution to journalReview article

Open Access
2019

Description of klebsiella spallanzanii sp. Nov. and of klebsiella pasteurii sp. nov.

Merla, C., Rodrigues, C., Passet, V., Corbella, M., Thorpe, H. A., Kallonen, T. V. S., Zong, Z., Marone, P., Bandi, C., Sassera, D., Corander, J., Feil, E. J. & Brisse, S., 25 Oct 2019, In : Frontiers in Microbiology. 10, p. 1-9 9 p., 2360.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

High tech research reveals preferential feeding in honey bees

Greco, M. K., Coates, B. & Feil, E. J., 2019, In : Journal of Apicultural Research. 58, 3, p. 471-477 7 p.

Research output: Contribution to journalArticle

Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland

Al-Khafaji, A. M., Clegg, S. R., Pinder, A. C., Luu, L., Hansford, K. M., Seelig, F., Dinnis, R. E., Margos, G., Medlock, J. M., Feil, E. J., Darby, A. C., McGarry, J. W., Gilbert, L., Plantard, O., Sassera, D. & Makepeace, B. L., 1 Jan 2019, In : Ticks and Tick-Borne Diseases. 10, 1, p. 52-62 11 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

Bayliss, S. C., Thorpe, H. A., Coyle, N. M., Sheppard, S. K. & Feil, E. J., 1 Oct 2019, In : GigaScience. 8, 10, p. 1-9 9 p., giz119.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Recent mixing of Vibrio parahaemolyticus populations

Yang, C., Pei, X., Wu, Y., Yan, L., Yan, Y., Song, Y., Coyle, N. M., Martinez-Urtaza, J., Quince, C., Hu, Q., Jiang, M., Feil, E., Yang, D., Song, Y., Zhou, D., Yang, R., Falush, D. & Cui, Y., 31 Oct 2019, In : ISME Journal. 13, 10, p. 2578-2588 11 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
11 Downloads (Pure)

Using the wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens

Hernandez, R. J., Hesse, E., Dowling, A. J., Coyle, N. M., Feil, E. J., Gaze, W. H. & Vos, M., 4 Jan 2019, In : PeerJ. 6, 1, p. e6150 e6150.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome

Pinholt, M., Bayliss, S. C., Gumpert, H., Worning, P., Jensen, V. V. S., Pedersen, M., Feil, E. J. & Westh, H., 1 Jul 2019, In : Journal of Antimicrobial Chemotherapy. 74, 7, p. 1776-1785 10 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2018

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Méric, G., Mageiros, L., Pensar, J., Laabei, M., Yahara, K., Pascoe, B., Kittiwan, N., Tadee, P., Post, V., Lamble, S., Bowden, R., Bray, J. E., Morgenstern, M., Jolley, K. A., Maiden, M. C. J., Feil, E. J., Didelot, X., Miragaia, M., de Lencastre, H., Moriarty, T. F. & 5 others, Rohde, H., Massey, R., Mack, D., Corander, J. & Sheppard, S. K., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 11 p., 5034.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)
Open Access
9 Citations (Scopus)

Evidence for an effect of landscape connectivity on Borrelia burgdorferi sensu stricto dispersion in a zone of range expansion

Mechai, S., Margos, G., Feil, E. J., Lindsay, L. R., Michel, P., Kotchi, S. O. & Ogden, N. H., 1 Sep 2018, In : Ticks and Tick-Borne Diseases. 9, 6, p. 1407-1415 9 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Gene exchange drives the ecological success of a multi-host bacterial pathogen

Richardson, E. J., Bacigalupe, R., Harrison, E. M., Weinert, L. A., Lycett, S., Vrieling, M., Robb, K., Hoskisson, P. A., Holden, M. T. G., Feil, E. J., Paterson, G. K., Tong, S. Y. C., Shittu, A., van Wamel, W., Aanensen, D. M., Parkhill, J., Peacock, S. J., Corander, J., Holmes, M. & Fitzgerald, J. R., 1 Sep 2018, In : Nature Ecology and Evolution. 2, 9, p. 1468-1478 11 p.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry

Bayliss, S. C., Verner-Jeffreys, D. W., Ryder, D., Suarez, R., Ramirez, R., Romero, J., Pascoe, B., Sheppard, S. K., Godoy, M. & Feil, E. J., 1 Sep 2018, In : Microbial Genomics. 4, 9, 12 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Phylogeny of Vibrio vulnificus from the analysis of the core-genome: Implications for intra-species taxonomy

Roig, F. J., González-Candelas, F., Sanjuán, E., Fouz, B., Feil, E. J., Llorens, C., Baker-Austin, C., Oliver, J. D., Danin-Poleg, Y., Gibas, C. J., Kashi, Y., Gulig, P. A., Morrison, S. S. & Amaro, C., 5 Jan 2018, In : Frontiers in Microbiology. 8, p. 1-13 13 p., 2613.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria.

Thorpe, H., Bayliss, S., Sheppard, S. & Feil, E., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-11 11 p., giy015.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

The distribution of bacterial doubling times in the wild

Gibson, B., Wilson, D. J., Feil, E. & Eyre-Walker, A., 30 Jun 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1880, p. 1-9 9 p., 20180789.

Research output: Contribution to journalArticle

Open Access
20 Citations (Scopus)

The importance of cross-disciplinary research to combat antimicrobial resistance: Introducing a new pop-up journal, X-AMR

Knight, G., Lambert, H., Feil, E., Holmes, M. & Lindsay, J., 1 Aug 2018, In : Microbiology (United Kingdom). 4, 7, p. 1-2 2 p., 000684.

Research output: Contribution to journalEditorial

Open Access

Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones

Tyler, S., Tyson, S., Dibernardo, A., Drebot, M., Feil, E. J., Graham, M., Knox, N. C., Lindsay, L. R., Margos, G., Mechai, S., Van Domselaar, G., Thorpe, H. A. & Ogden, N. H., 12 Jul 2018, In : Scientific Reports. 8, 1, p. 1-12 12 p., 10552.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)
2017

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Do antibiotics and antibiotic resistance genes play a role in enhancing antimicrobial resistance in wastewater?

Castrignano, E., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

Draft genome sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 new isolates belonging to the genus Salinivibrio

López-Hermoso, C., de la Haba, R. R., Cristina Sánchez-Porro, S-P., Bayliss, S. C., Feil, E. J. & Ventosa, A., 1 Jul 2017, In : Genome announcements. 5, 27, e00244-17.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Enterobacteriaceae: joining the dots with pan-European epidemiology

Feil, E. J., 1 Feb 2017, In : The Lancet Infectious Diseases. 17, 2, p. 118-119 2 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Pinholt, M., Gumpert, H., Bayliss, S., Nielsen, J. B., Vorobieva, V., Pedersen, M., Feil, E., Worning, P. & Westh, H., 1 Jan 2017, In : Journal of Antimicrobial Chemotherapy. 72, 1, p. 40-47 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns

Donker, T., Reuter, S., Sciberras, J., Reynolds, R., Brown, N., Torok, M. E., James, R., East of England Microbiology Research Network, Aanensen, D. M., Bentley, S. D., Holden, M. T. G., Parkhill, J., Spratt, B. G., Peacock, S. J., Feil, E. J. & Grundmann, H., 4 Jul 2017, In : Microbial Genomics. 3

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

The Evolution and Dynamics of Methicillin-Resistant Staphylococcus aureus

Abdelbary, M. M. H., Basset, P., Blanc, D. S. & Feil, E. J., 8 Feb 2017, Genetics and Evolution of Infectious Diseases (2nd Ed.). Tibayrenc, M. (ed.). Elsevier, p. 553-572 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

The promise of whole genome pathogen sequencing for the molecular epidemiology of emerging aquaculture pathogens

Bayliss, S. C., Verner-Jeffries, D. W., Bartie, K. L., Aanensen, D. M., Sheppard, S. K., Adams, A. & Feil, E. J., 3 Feb 2017, In : Frontiers in Microbiology. 8, 237708 .

Research output: Contribution to journalReview article

Open Access
19 Citations (Scopus)

The use of Oxford Nanopore native barcoding for complete genome assembly

Bayliss, S. C., Hunt, V. L., Yokoyama, M., Thorpe, H. A. & Feil, E. J., 1 Mar 2017, In : GigaScience. 6, 3, p. 1-6 gix001.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Wastewater-based epidemiology as a powerful tool for helping to tackle antibiotic resistance

Castrignano, E., Elder, F., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

2016

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
124 Downloads (Pure)

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Reuter, S., Estee Torok, M., Holden, M. T. G., Reynolds, R., Raven, K. E., Blane, B., Donker, T., Bentley, S. D., Aanensen, D. M., Grundmann, H., Feil, E. J., Spratt, B. G., Parkhill, J. & Peacock, S. J., 1 Feb 2016, In : Genome Research. 26, 2, p. 263-270 8 p.

Research output: Contribution to journalArticle

Open Access
File
31 Citations (Scopus)
114 Downloads (Pure)

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
20 Citations (Scopus)
275 Downloads (Pure)

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Chang, H. H., Dordel, J., Donker, T., Worby, C. J., Feil, E. J., Hanage, W. P., Bentley, S. D., Huang, S. S. & Lipsitch, M., 13 Feb 2016, In : Genome Medicine. 8, 18

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

The impact of host metapopulation structure on the population genetics of colonizing bacteria

Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., van Schaik, W., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus

Senn, L., Clerc, O., Zanetti, G., Basset, P., Prod'hom, G., Gordon, N., Sheppard, A., Crook, D., James, R., Thorpe, H. A. F. W., Feil, E. & Blanc, D., 28 Feb 2016, In : mBio. 7, 1, p. 1-9 9 p., e02039-15.

Research output: Contribution to journalArticle

Open Access
36 Citations (Scopus)
44 Downloads (Pure)

Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing

Senghore, M., Bayliss, S., Kwambana-Adams, B., Foster-Nyarko, E., Menneh, J., Dione, M., Badji, H., Ebruke, C., Doughty, E., Thorpe, H. A. F. W., Jasinska, A., Schmitt, C., Cramer, J., Turner, T., Weinstock, G., Freimer, N., Pallen, M., Feil, E. & Antonio, M., Oct 2016, In : Applied and Environmental Microbiology. 82, 19, p. 5910-5917 8 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Whole-genome sequencing for routine pathogen surveillance in Public Health: a population snapshot of invasive staphylococcus aureus in Europe

ESCMID Study Group on Molecular Epidemiological Markers (ESGEM) & European Staphylococcal Reference Laboratory Working Group, 30 Jun 2016, In : mBio. 7, 3, 15 p., e00444-16.

Research output: Contribution to journalArticle

Open Access
File
90 Citations (Scopus)
79 Downloads (Pure)

‘Resistance-proof’ antibiotics may never exist – but there are some promising alternatives

Gebhard, S. & Feil, E., 8 Mar 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
2015

Alternative splice in alternative lice

Tovar-Corona, J. M., Castillo-Morales, A., Chen, L., Olds, B. P., Clark, J. M., Reynolds, S. E., Pittendrigh, B. R., Feil, E. J. & Urrutia, A. O., 1 Oct 2015, In : Molecular Biology and Evolution. 32, 10, p. 2749-2759 11 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Complex population structure of Borrelia burgdorferi in southeastern and south central Canada as revealed by phylogeographic analysis

Mechai, S., Margos, G., Feil, E. J., Lindsay, L. R. & Ogden, N. H., Feb 2015, In : Applied and Environmental Microbiology. 81, 4, p. 1309-1318 10 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis

Méric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. & 1 others, Sheppard, S. K., May 2015, In : Genome biology and evolution. 7, 5, p. 1313-1328 16 p.

Research output: Contribution to journalArticle

Open Access
55 Citations (Scopus)

Evolutionary aspects of emerging lyme disease in Canada

Ogden, N. H., Feil, E. J., Leighton, P. A., Lindsay, L. R., Margos, G., Mechai, S., Michel, P. & Moriarty, T. J., Nov 2015, In : Applied and Environmental Microbiology. 81, 21, p. 7350-7359 10 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Evolutionary trade-offs underlie the multi-faceted virulence of staphylococcus aureus

Laabei, M., Uhlemann, A-C., Lowy, F. D., Austin, E. D., Yokoyama, M., Ouadi, K., Feil, E., Thorpe, H. A., Williams, B. G., Perkins, M., Peacock, S. J., Clarke, S. R., Dordel, J., Holden, M., Votintseva, A. A., Bowden, R., Crook, D. W., Young, B. C., Wilson, D. J., Recker, M. & 1 others, Massey, R. C., 30 Sep 2015, In : PLoS Biology. 13, 9, p. 1-21 21 p., e1002229.

Research output: Contribution to journalArticle

Open Access
55 Citations (Scopus)
40 Downloads (Pure)

Toward a synthesis of genotypic typing and phenotypic inference in the genomics era

Feil, E. J., 1 Dec 2015, In : Future Microbiology. 10, 12, p. 1897-1899 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2014

Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements

Brynildsrud, O., Feil, E. J., Bohlin, J., Castillo-Ramirez, S., Colquhoun, D., McCarthy, U., Matejusova, I. M., Rhodes, L. D., Wiens, G. D. & Verner-Jeffreys, D. W., 30 Apr 2014, In : ISME Journal. 8, p. 746-756 11 p.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius

Budge, G. E., Shirley, M. D. F., Jones, B., Quill, E., Tomkies, V., Feil, E. J., Brown, M. A. & Haynes, E. G., Aug 2014, In : ISME Journal. 8, p. 1588-1597 10 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Multilocus sequence typing using mitochondrial genes (mtMLST) reveals geographic population structure of Ixodes ricinus ticks

Dinnis, R. E., Seelig, F., Bormane, A., Donaghy, M., Vollmer, S. A., Feil, E. J., Kurtenbach, K. & Margos, G., Mar 2014, In : Ticks and Tick-Borne Diseases. 5, 2, p. 152-160 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Predicting the virulence of MRSA from its genome sequence

Laabei, M., Recker, M., Rudkin, J. K., Aldeljawi, M., Gulay, Z., Sloan, T. J., Williams, P., Endres, J. L., Bayles, K. W., Fey, P. D., Yajjala, V. K., Widhelm, T., Hawkins, E., Lewis, K., Parfett, S., Scowen, L., Peacock, S. J., Holden, M., Wilson, D., Read, T. D. & 6 others, Van Den Elsen, J., Priest, N. K., Feil, E. J., Hurst, L. D., Josefsson, E. & Massey, R. C., 1 May 2014, In : Genome Research. 24, 5, p. 839-849 11 p.

Research output: Contribution to journalArticle

Open Access
80 Citations (Scopus)
59 Downloads (Pure)