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Author

  • Laurence Hurst
Article

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states

Nützmann, H-W., Doerr, D., Ramirez-Colmenero, A., Sotelo-Fonseca, J. E., Wegel, E., Di Stefano, M., Wingett, S. W., Fraser, P., Hurst, L., Fernandez-Valverde, S. L. & Osbourn, A., 16 Jun 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 24, p. 13800-13809 10 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
60 Downloads (Pure)

Adenine Enrichment at the Fourth CDS Residue in Bacterial Genes Is Consistent with Error Proofing for +1 Frameshifts

Abrahams, L. & Hurst, L. D., 1 Dec 2017, In : Molecular Biology and Evolution. 34, 12, p. 3064-3080 17 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

A Depletion of Stop Codons in lincRNA is Owing to Transfer of Selective Constraint from Coding Sequences

Abrahams, L. & Hurst, L. D., 1 Apr 2020, In : Molecular Biology and Evolution. 37, 4, p. 1148-1164 17 p.

Research output: Contribution to journalArticle

Open Access

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

Hurst, L. D., Sachenkova, O., Daub, C., Forrest, A. R. R. & Huminiecki, L., 31 Jul 2014, In : Genome Biology. 15, 7, 413.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Atypical AT skew in firmicute genomes results from selection and not from mutation

Charneski, C. A., Honti, F., Bryant, J. M., Hurst, L. D. & Feil, E. J., 15 Sep 2011, In : Plos Genetics. 7, 9, 14 p., e1002283.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Birt Hogg-Dube Syndrome-Associated FLCN Mutations Disrupt Protein Stability

Nahorski, M. S., Reiman, A., Lim, D. H. K., Nookala, R. K., Seabra, L., Lu, X. H., Fenton, J., Boora, U., Nordenskjold, M., Latif, F., Hurst, L. D. & Maher, E. R., Aug 2011, In : Human Mutation. 32, 8, p. 921-929 9 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Both maintenance and avoidance of RNA-binding protein interactions constrain coding region evolution

Savisaar, R. & Hurst, L., 1 May 2017, In : Molecular Biology and Evolution. 34, 5, p. 1110-1126

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
170 Downloads (Pure)

Codon Usage and Splicing Jointly Influence mRNA Localization

Hurst, L., 22 Apr 2020, In : Cell Systems. 10, 4, p. 351-362

Research output: Contribution to journalArticle

Open Access

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Competition between transposable elements and mutator genes in bacteria

Feher, T., Bogos, B., Mehi, O., Fekete, G., Csorgo, B., Kovacs, K., Posfai, G., Papp, B., Hurst, L. D. & Pal, C., 1 Oct 2012, In : Molecular Biology and Evolution. 29, 10, p. 3153-3159

Research output: Contribution to journalArticle

21 Citations (Scopus)

Conditional expression explains molecular evolution of social genes in a microbe

de Oliveira, J. L., Morales, A. C., Stewart, B., Gruenheit, N., Engelmoer, J., Brown, S. B., de Brito, R. A., Hurst, L. D., Urrutia, A. O., Thompson, C. R. L. & Wolf, J. B., 23 Jul 2019, In : Nature Communications. 10, 1, p. 1-12 12 p., 3284.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Depletion of somatic mutations in splicing-associated sequences in cancer genomes

Hurst, L. & Batada, N. N., 7 Nov 2017, In : Genome Biology. 18, 1, 12 p., 213.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
Open Access
File
23 Citations (Scopus)
134 Downloads (Pure)

Direct and indirect consequences of meiotic recombination: Implications for genome evolution

Webster, M. T. & Hurst, L. D., Mar 2012, In : Trends in Genetics. 28, 3, p. 101-109 9 p.

Research output: Contribution to journalArticle

66 Citations (Scopus)

Direct determination of the mutation rate in the bumblebee reveals evidence for weak recombination-associated mutation and an approximate rate constancy in insects

Liu, H., Jia, Y., Sun, X., Tian, D., Hurst, L. D. & Yang, S., 1 Jan 2017, In : Molecular Biology and Evolution. 34, 1, p. 119-130 12 p.

Research output: Contribution to journalArticle

Open Access
21 Citations (Scopus)

Distinct physiological and behavioural functions for parental alleles of imprinted Grb10

Garfield, A. S., Cowley, M., Smith, F. M., Moorwood, K., Stewart-Cox, J. E., Gilroy, K., Baker, S., Xia, J., Dalley, J. W., Hurst, L. D., Wilkinson, L. S., Isles, A. R. & Ward, A., 27 Jan 2011, In : Nature. 469, 7331, p. 534-538 5 p.

Research output: Contribution to journalArticle

124 Citations (Scopus)

Disturbed Placental Imprinting in Preeclampsia Leads to Altered Expression of DLX5, a Human-Specific Early Trophoblast Marker

Zadora, J., Singh, M., Herse, F., Przybyl, L., Haasse, N., Golic, M., Yung, H. W., Huppertz, B., Cartwright, J. E., Whitley, G., Johnsen, G. M., Levi, G., Isbruch, A., Schulz, H., Luft, F. C., Muller, D. N., Staff, A. C., Hurst, L., Dechend, R. & Izsvak, Z., 7 Nov 2017, In : Circulation. 136, 19, p. 1824-1839 16 p.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses

Woods, S., Coghlan, A., Rivers, D., Warnecke, T., Jeffries, S. J., Kwon, T., Rogers, A., Hurst, L. & Ahringer, J., 9 May 2013, In : Plos Genetics. 9, 5, e1003330.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica

Mühlhausen, S., Schmitt, H. D., Pan, K. T., Plessmann, U., Urlaub, H., Hurst, L. D. & Kollmar, M., 9 Jul 2018, In : Current Biology. 28, 13, p. 2046-2057 18 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Engineering of PEDF-Expressing Primary Pigment Epithelial Cells by the SB Transposon System Delivered by pFAR4 Plasmids

Thumann, G., Harmening, N., Prat-Souteyrand, C., Marie, C., Pastor, M., Sebe, A., Miskey, C., Hurst, L. D., Diarra, S., Kropp, M., Walter, P., Scherman, D., Ivics, Z., Izsvák, Z. & Johnen, S., 17 Mar 2017, In : Molecular Therapy - Nucleic Acids. 6, p. 302-314 13 p.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations

Jiang, C., Mithani, A., Belfield, E. J., Mott, R., Hurst, L. D. & Harberd, N. P., 1 Nov 2014, In : Genome Research. 24, 11, p. 1821-1829 9 p.

Research output: Contribution to journalArticle

Open Access
81 Citations (Scopus)

Epistasis analysis uncovers hidden antibiotic resistance-associated fitness costs hampering the evolution of MRSA

Yokoyama, M., Stevens, E., Laabei, M., Bacon, L., Heesom, K., Bayliss, S., Ooi, N., O'Neill, A. J., Murray, E., Williams, P., Lubben, A., Reeksting, S., Meric, G., Pascoe, B., Sheppard, S. K., Recker, M., Hurst, L. D. & Massey, R. C., 18 Jul 2018, In : Genome Biology. 19, 1, p. 1-12 12 p., 94.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Error prevention and mitigation as forces in the evolution of genes and genomes

Warnecke, T. & Hurst, L. D., Dec 2011, In : Nature Reviews Genetics. 12, 12, p. 875-881 7 p.

Research output: Contribution to journalArticle

Open Access
File
26 Citations (Scopus)
142 Downloads (Pure)

Estimating the prevalence of functional exonic splice regulatory information

Savisaar, R. & Hurst, L. D., 1 Sep 2017, In : Human Molecular Genetics. 136, 9, p. 1059-1078 20 p.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Evidence for deep phylogenetic conservation of exonic splice-related constraints: Splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans

Wu, X., Tronholm, A., Fernandez Cáceres, E., Tovar-Corona, J. M., Chen, L., Urrutia, A. O. & Hurst, L. D., 2013, In : Genome biology and evolution. 5, 9, p. 1731-1745 15 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
130 Downloads (Pure)

Exome sequencing identifies frequent mutation of MLL2 in non-small cell lung carcinoma from Chinese patients

Yin, S., Yang, J., Lin, B., Deng, W., Zhang, Y., Yi, X., Shi, Y., Tao, Y., Cai, J., Wu, C-I., Zhao, G., Hurst, L. D., Zhang, J., Hu, L. & Kong, X., 12 Aug 2014, In : Scientific Reports. 4, 6036.

Research output: Contribution to journalArticle

Open Access
File
23 Citations (Scopus)
130 Downloads (Pure)

Exonic splice regulation imposes strong selection at synonymous sites

Savisaar, R. & Hurst, L., 1 Oct 2018, In : Genome Research. 28, 10, p. 1442-1454 13 p.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)

Faster Evolving Primate Genes Are More Likely to Duplicate

O'Toole, Á. N., Hurst, L. D. & McLysaght, A., 1 Jan 2018, In : Molecular Biology and Evolution. 35, 1, p. 107-118 12 p.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)
56 Citations (Scopus)

Genomic analysis of isolates from the United Kingdom 2012 pertussis outbreak reveals that vaccine antigen genes are unusually fast evolving

Sealey, K. L., Harris, S. R., Fry, N. K., Hurst, L. D., Gorringe, A. R., Parkhill, J. & Preston, A., 15 Jul 2015, In : Journal of Infectious Diseases. 212, 2, p. 294-301 8 p.

Research output: Contribution to journalArticle

Open Access
File
43 Citations (Scopus)
143 Downloads (Pure)

Great majority of recombination events in Arabidopsis are gene conversion events

Yang, S., Yuan, Y., Wang, L., Li, J., Wang, W., Liu, H., Chen, J., Hurst, L. D. & Tian, D., 18 Dec 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 51, p. 20992-20997 6 p.

Research output: Contribution to journalArticle

Open Access
File
53 Citations (Scopus)
101 Downloads (Pure)

Human evolution is still happening – possibly faster than ever

Hurst, L. D., 14 Nov 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
Open Access
File
11 Citations (Scopus)
37 Downloads (Pure)

In eubacteria, unlike eukaryotes, there is no evidence for selection favouring fail-safe 3' additional stop codons

Ho, A. T. & Hurst, L. D., 17 Sep 2019, In : Plos Genetics. 15, 9, p. 1-32 32 p., e1008386.

Research output: Contribution to journalArticle

Open Access

Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression

Wang, J., Singh, M., Sun, C., Besser, D., Prigione, A., Ivics, Z., Hurst, L. D. & Izsvák, Z., 1 Feb 2016, In : Nature Protocols. 11, 2, p. 327-346 20 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
4 Citations (Scopus)

Late-replicating domains have higher divergence and diversity in Drosophila melanogaster

Weber, C. C., Pink, C. J. & Hurst, L. D., Feb 2012, In : Molecular Biology and Evolution. 29, 2, p. 873-882 10 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Male Mutation Bias Is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals

Link, V., Aguilar-Gómez, D., Ramírez-Suástegui, C., Hurst, L. D. & Cortez, D., 1 Sep 2017, In : Genome biology and evolution. 9, 9, p. 2198-2210 13 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Metabolic trade-offs and the maintenance of the fittest and the flattest

Beardmore, R. E., Gudelj, I., Lipson, D. A. & Hurst, L. D., 21 Apr 2011, In : Nature. 472, 7343, p. 342-346 5 p.

Research output: Contribution to journalArticle

63 Citations (Scopus)

Molecular genetics: The sound of silence

Hurst, L. D., 31 Mar 2011, In : Nature. 471, 7340, p. 582-583 2 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Mutation rate analysis via parent– progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids

Xie, Z., Wang, L., Wang, L., Wang, Z., Lu, Z., Tian, D., Yang, S. & Hurst, L. D., 26 Oct 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1841, 20161016.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
122 Downloads (Pure)

Mutation rate analysis via parent- progeny sequencing of the perennial peach. II. No evidence for recombination associated mutation

Wang, L., Zhang, Y., Qin, C., Tian, D., Yang, S. & Hurst, L. D., 26 Oct 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1841, 20161785.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
198 Downloads (Pure)

Neighboring genes show correlated evolution in gene expression

Ghanbarian, A. T. & Hurst, L. D., Jul 2015, In : Molecular Biology and Evolution. 32, 7, p. 1748-1766

Research output: Contribution to journalArticle

52 Citations (Scopus)

Open questions: A logic (or lack thereof) of genome organization

Hurst, L. D., 28 May 2013, In : BMC Biology. 11, 58.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Parent-progeny sequencing indicates higher mutation rates in heterozygotes

Yang, S., Wang, L., Huang, J., Zhang, X., Yuan, Y., Chen, J. Q., Hurst, L. D. & Tian, D., 23 Jul 2015, In : Nature. 523, 7561, p. 463-467 5 p.

Research output: Contribution to journalArticle

Open Access
File
70 Citations (Scopus)
216 Downloads (Pure)

Pluripotency and the endogenous retrovirus HERVH: conflict or serendipity?

Izsvák, Z., Wang, J., Singh, M., Mager, D. L. & Hurst, L. D., 1 Jan 2016, In : Bioessays. 38, 1, p. 109-117 9 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp

Charneski, C. A. & Hurst, L. D., Jan 2014, In : Molecular Biology and Evolution. 31, 1, p. 70-84 15 p.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
150 Downloads (Pure)

Positively charged residues are the major determinants of ribosomal velocity

Charneski, C. A. & Hurst, L. D., 12 Mar 2013, In : PLoS Biology. 11, 3, e1001508.

Research output: Contribution to journalArticle

144 Citations (Scopus)

Predicting the virulence of MRSA from its genome sequence

Laabei, M., Recker, M., Rudkin, J. K., Aldeljawi, M., Gulay, Z., Sloan, T. J., Williams, P., Endres, J. L., Bayles, K. W., Fey, P. D., Yajjala, V. K., Widhelm, T., Hawkins, E., Lewis, K., Parfett, S., Scowen, L., Peacock, S. J., Holden, M., Wilson, D., Read, T. D. & 6 others, Van Den Elsen, J., Priest, N. K., Feil, E. J., Hurst, L. D., Josefsson, E. & Massey, R. C., 1 May 2014, In : Genome Research. 24, 5, p. 839-849 11 p.

Research output: Contribution to journalArticle

Open Access
84 Citations (Scopus)
59 Downloads (Pure)