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  • Edward Feil

(Fluoro)quinolones and quinolone resistance genes in the aquatic environment: A river catchment perspective

Castrignanò, E., Kannan, A. M., Proctor, K., Petrie, B., Hodgen, S., Feil, E. J., Lewis, S. E., Lopardo, L., Camacho-Muñoz, D., Rice, J., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 1 Sep 2020, In : Water Research. 182, 116015.

Research output: Contribution to journalArticle

A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum

Coyle, N. M., Bartie, K. L., Bayliss, S. C., Bekaert, M., Adams, A., McMillan, S., Verner-Jeffreys, D. W., Desbois, A. P. & Feil, E. J., 29 Jun 2020, In : Frontiers in Microbiology. 11, 1430.

Research output: Contribution to journalArticle

Open Access

Alternative splice in alternative lice

Tovar-Corona, J. M., Castillo-Morales, A., Chen, L., Olds, B. P., Clark, J. M., Reynolds, S. E., Pittendrigh, B. R., Feil, E. J. & Urrutia, A. O., 1 Oct 2015, In : Molecular Biology and Evolution. 32, 10, p. 2749-2759 11 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species

Boonsilp, S., Thaipadungpanit, J., Amornchai, P., Wuthiekanun, V., Bailey, M. S., Holden, M. T. G., Zhang, C., Jiang, X., Koizumi, N., Taylor, K., Galloway, R., Hoffmaster, A. R., Craig, S., Smythe, L. D., Hartskeerl, R. A., Day, N. P., Chantratita, N., Feil, E. J., Aanensen, D. M., Spratt, B. G. & 1 others, Peacock, S. J., Jan 2013, In : PLoS Neglected Tropical Diseases. 7, 1, 1954.

Research output: Contribution to journalArticle

Open Access
File
92 Citations (Scopus)
142 Downloads (Pure)

Atypical AT skew in firmicute genomes results from selection and not from mutation

Charneski, C. A., Honti, F., Bryant, J. M., Hurst, L. D. & Feil, E. J., 15 Sep 2011, In : Plos Genetics. 7, 9, 14 p., e1002283.

Research output: Contribution to journalArticle

12 Citations (Scopus)

A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

Holt, D. C., Holden, M. T. G., Tong, S. Y. C., Castillo-Ramirez, S., Clarke, L., Quail, M. A., Currie, B. J., Parkhill, J., Bentley, S. D., Feil, E. J. & Giffard, P. M., 2011, In : Genome biology and evolution. 3, p. 881-895 15 p.

Research output: Contribution to journalArticle

98 Citations (Scopus)

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
133 Downloads (Pure)

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Reuter, S., Estee Torok, M., Holden, M. T. G., Reynolds, R., Raven, K. E., Blane, B., Donker, T., Bentley, S. D., Aanensen, D. M., Grundmann, H., Feil, E. J., Spratt, B. G., Parkhill, J. & Peacock, S. J., 1 Feb 2016, In : Genome Research. 26, 2, p. 263-270 8 p.

Research output: Contribution to journalArticle

Open Access
File
31 Citations (Scopus)
121 Downloads (Pure)

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Comparison of two multilocus sequence based genotyping schemes for Leptospira species

Ahmed, A., Thaipadungpanit, J., Boonsilp, S., Wuthiekanun, V., Nalam, K., Spratt, B. G., Aanensen, D. M., Smythe, L. D., Ahmed, N., Feil, E. J., Hartskeerl, R. A. & Peacock, S. J., 2011, In : PLoS Neglected Tropical Diseases. 5, 11, e1374.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Complex population structure of Borrelia burgdorferi in southeastern and south central Canada as revealed by phylogeographic analysis

Mechai, S., Margos, G., Feil, E. J., Lindsay, L. R. & Ogden, N. H., Feb 2015, In : Applied and Environmental Microbiology. 81, 4, p. 1309-1318 10 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Corrigendum to “Enantiomeric profiling of quinolones and quinolones resistance gene qnrS in European wastewaters” [Water Res. 175 (2020) 115653] (Water Research (2020) 175, (S0043135420301895), (10.1016/j.watres.2020.115653))

Castrignano, E., Yang, Z., Feil, E. J., Bade, R., Castiglioni, S., Causanilles, A., Gracia-Lor, E., Hernandez, F., Plόszi, B. G., Ramin, P., Rousis, N. I., Ryu, Y., Thomas, K. V., de Voogt, P., Zuccato, E. & Kasprzyk-Hordern, B., 1 Sep 2020, In : Water Research. 182, 116345.

Research output: Contribution to journalComment/debate

Description of klebsiella spallanzanii sp. Nov. and of klebsiella pasteurii sp. nov.

Merla, C., Rodrigues, C., Passet, V., Corbella, M., Thorpe, H. A., Kallonen, T. V. S., Zong, Z., Marone, P., Bandi, C., Sassera, D., Corander, J., Feil, E. J. & Brisse, S., 25 Oct 2019, In : Frontiers in Microbiology. 10, p. 1-9 9 p., 2360.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Méric, G., Mageiros, L., Pensar, J., Laabei, M., Yahara, K., Pascoe, B., Kittiwan, N., Tadee, P., Post, V., Lamble, S., Bowden, R., Bray, J. E., Morgenstern, M., Jolley, K. A., Maiden, M. C. J., Feil, E. J., Didelot, X., Miragaia, M., de Lencastre, H., Moriarty, T. F. & 5 others, Rohde, H., Massey, R., Mack, D., Corander, J. & Sheppard, S. K., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 11 p., 5034.

Research output: Contribution to journalArticle

Open Access
17 Citations (Scopus)

Diversity and recombination in Wolbachia and Cardinium from Bryobia spider mites

Ros, V. I. D., Fleming, V. M., Feil, E. J. & Breeuwer, J. A. J., 18 Jan 2012, In : BMC Microbiology. 12, Supplement 1, S13.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Do antibiotics and antibiotic resistance genes play a role in enhancing antimicrobial resistance in wastewater?

Castrignano, E., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

Draft genome sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 new isolates belonging to the genus Salinivibrio

López-Hermoso, C., de la Haba, R. R., Cristina Sánchez-Porro, S-P., Bayliss, S. C., Feil, E. J. & Ventosa, A., 1 Jul 2017, In : Genome announcements. 5, 27, e00244-17.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis

Méric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. & 1 others, Sheppard, S. K., May 2015, In : Genome biology and evolution. 7, 5, p. 1313-1328 16 p.

Research output: Contribution to journalArticle

Open Access
58 Citations (Scopus)

Enantiomeric profiling of quinolones and quinolones resistance gene qnrS in European wastewaters

Castrignanò, E., Yang, Z., Feil, E. J., Bade, R., Castiglioni, S., Causanilles, A., Gracia-Lor, E., Hernandez, F., Plósz, B. G., Ramin, P., Rousis, N. I., Ryu, Y., Thomas, K. V., de Voogt, P., Zuccato, E. & Kasprzyk-Hordern, B., 15 May 2020, In : Water Research. 175, p. 115653 115653.

Research output: Contribution to journalArticle

1 Citation (Scopus)
Open Access
12 Citations (Scopus)

Enterobacteriaceae: joining the dots with pan-European epidemiology

Feil, E. J., 1 Feb 2017, In : The Lancet Infectious Diseases. 17, 2, p. 118-119 2 p.

Research output: Contribution to journalComment/debate

2 Citations (Scopus)

Evidence for an effect of landscape connectivity on Borrelia burgdorferi sensu stricto dispersion in a zone of range expansion

Mechai, S., Margos, G., Feil, E. J., Lindsay, L. R., Michel, P., Kotchi, S. O. & Ogden, N. H., 1 Sep 2018, In : Ticks and Tick-Borne Diseases. 9, 6, p. 1407-1415 9 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
20 Citations (Scopus)
294 Downloads (Pure)

Evolutionary aspects of emerging lyme disease in Canada

Ogden, N. H., Feil, E. J., Leighton, P. A., Lindsay, L. R., Margos, G., Mechai, S., Michel, P. & Moriarty, T. J., Nov 2015, In : Applied and Environmental Microbiology. 81, 21, p. 7350-7359 10 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Evolutionary trade-offs underlie the multi-faceted virulence of staphylococcus aureus

Laabei, M., Uhlemann, A-C., Lowy, F. D., Austin, E. D., Yokoyama, M., Ouadi, K., Feil, E., Thorpe, H. A., Williams, B. G., Perkins, M., Peacock, S. J., Clarke, S. R., Dordel, J., Holden, M., Votintseva, A. A., Bowden, R., Crook, D. W., Young, B. C., Wilson, D. J., Recker, M. & 1 others, Massey, R. C., 30 Sep 2015, In : PLoS Biology. 13, 9, p. 1-21 21 p., e1002229.

Research output: Contribution to journalArticle

Open Access
57 Citations (Scopus)
40 Downloads (Pure)

From genotype to phenotype: can systems biology be used to predict Staphylococcus aureus virulence?

Priest, N. K., Rudkin, J. K., Feil, E. J., Van Den Elsen, J. M. H., Cheung, A., Peacock, S. J., Laabei, M., Lucks, D. A., Recker, M. & Massey, R. C., Nov 2012, In : Nature Reviews Microbiology. 10, 11, p. 791-797 7 p.

Research output: Contribution to journalReview article

43 Citations (Scopus)

Gene exchange drives the ecological success of a multi-host bacterial pathogen

Richardson, E. J., Bacigalupe, R., Harrison, E. M., Weinert, L. A., Lycett, S., Vrieling, M., Robb, K., Hoskisson, P. A., Holden, M. T. G., Feil, E. J., Paterson, G. K., Tong, S. Y. C., Shittu, A., van Wamel, W., Aanensen, D. M., Parkhill, J., Peacock, S. J., Corander, J., Holmes, M. & Fitzgerald, J. R., 1 Sep 2018, In : Nature Ecology and Evolution. 2, 9, p. 1468-1478 11 p.

Research output: Contribution to journalArticle

Open Access
29 Citations (Scopus)

Genetic relationships of Vibrio parahaemolyticus isolates from clinical, human carrier, and environmental sources in Thailand, determined by multilocus sequence analysis

Theethakaew, C., Feil, E. J., Castillo-Ramírez, S., Aanensen, D. M., Suthienkul, O., Neil, D. M. & Davies, R. L., 1 Apr 2013, In : Applied and Environmental Microbiology. 79, 7, p. 2358-2370

Research output: Contribution to journalArticle

39 Citations (Scopus)

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Pinholt, M., Gumpert, H., Bayliss, S., Nielsen, J. B., Vorobieva, V., Pedersen, M., Feil, E., Worning, P. & Westh, H., 1 Jan 2017, In : Journal of Antimicrobial Chemotherapy. 72, 1, p. 40-47 8 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry

Bayliss, S. C., Verner-Jeffreys, D. W., Ryder, D., Suarez, R., Ramirez, R., Romero, J., Pascoe, B., Sheppard, S. K., Godoy, M. & Feil, E. J., 1 Sep 2018, In : Microbial Genomics. 4, 9, 12 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

High-resolution sweep metagenomics using fast probabilistic inference

Mäklin, T., Kallonen, T., David, S., Boinett, C. J., Pascoe, B., Méric, G., Aanensen, D. M., Feil, E. J., Baker, S., Parkhill, J., Sheppard, S. K., Corander, J. & Honkela, A., 30 Jan 2020, In : Wellcome Open Research. 5, p. 14

Research output: Contribution to journalArticle

Open Access

High tech research reveals preferential feeding in honey bees

Greco, M. K., Coates, B. & Feil, E. J., 2019, In : Journal of Apicultural Research. 58, 3, p. 471-477 7 p.

Research output: Contribution to journalArticle

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset

Shepheard, M. A., Fleming, V. M., Connor, T. R., Corander, J., Feil, E. J., Fraser, C. & Hanage, W. P., 7 May 2013, In : PLoS ONE. 8, 5, 62369.

Research output: Contribution to journalArticle

Open Access
File
30 Citations (Scopus)
92 Downloads (Pure)

Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe

Vollmer, S. A., Bormane, A., Dinnis, R. E., Seelig, F., Dobson, A. D. M., Aanensen, D. M., James, M. C., Donaghy, M., Randolph, S. E., Feil, E. J., Kurtenbach, K. & Margos, G., Jan 2011, In : Environmental Microbiology. 13, 1, p. 184-192 9 p.

Research output: Contribution to journalArticle

73 Citations (Scopus)

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Chang, H. H., Dordel, J., Donker, T., Worby, C. J., Feil, E. J., Hanage, W. P., Bentley, S. D., Huang, S. S. & Lipsitch, M., 13 Feb 2016, In : Genome Medicine. 8, 18

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)

Investigation of Genotypes of Borrelia burgdorferi in Ixodes scapularis Ticks Collected during Surveillance in Canada

Ogden, N. H., Margos, G., Aanensen, D. M., Drebot, M. A., Feil, E. J., Hanincova, K., Schwartz, I., Tyler, S. & Lindsay, L. R., May 2011, In : Applied and Environmental Microbiology. 77, 10, p. 3244-3254 11 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)

Investigation of the population structure of the tick vector of lyme disease Ixodes scapularis (Acari:Ixodidae) in Canada using mitochondrial cytochrome C oxidase subunit I gene sequences

Mechai, S., Feil, E. J., Gariepy, T. D., Gregory, T. R., Lindsay, L. R., Millien, V. & Ogden, N. H., May 2013, In : Journal of Medical Entomology. 50, 3, p. 560-570

Research output: Contribution to journalArticle

15 Citations (Scopus)

Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements

Brynildsrud, O., Feil, E. J., Bohlin, J., Castillo-Ramirez, S., Colquhoun, D., McCarthy, U., Matejusova, I. M., Rhodes, L. D., Wiens, G. D. & Verner-Jeffreys, D. W., 30 Apr 2014, In : ISME Journal. 8, p. 746-756 11 p.

Research output: Contribution to journalArticle

Open Access
20 Citations (Scopus)

Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius

Budge, G. E., Shirley, M. D. F., Jones, B., Quill, E., Tomkies, V., Feil, E. J., Brown, M. A. & Haynes, E. G., Aug 2014, In : ISME Journal. 8, p. 1588-1597 10 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

Mcadam, P. R., Templeton, K. E., Edwards, G. F., Holden, M. T. G., Feil, E. J., Aanensen, D. M., Bargawi, H. J. A., Spratt, B. G., Bentley, S. D., Parkhill, J., Enright, M. C., Holmes, A., Girvan, E. K., Godfrey, P. A., Feldgarden, M., Kearns, A. M., Rambaut, A., Robinson, D. A. & Fitzgerald, J. R., 5 Jun 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 23, p. 9107-9112

Research output: Contribution to journalArticle

Open Access
File
113 Citations (Scopus)
149 Downloads (Pure)

Monitoring Infectious Diseases in Near-Real-Time for Rapid Outbreak Response

Boxall-Clasby, J., Kasprzyk-Hordern, B., Estrela, P., Feil, E. & Barden, R., 2020, (In preparation).

Research output: Contribution to conferencePoster

Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland

Al-Khafaji, A. M., Clegg, S. R., Pinder, A. C., Luu, L., Hansford, K. M., Seelig, F., Dinnis, R. E., Margos, G., Medlock, J. M., Feil, E. J., Darby, A. C., McGarry, J. W., Gilbert, L., Plantard, O., Sassera, D. & Makepeace, B. L., 1 Jan 2019, In : Ticks and Tick-Borne Diseases. 10, 1, p. 52-62 11 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Multilocus sequence typing using mitochondrial genes (mtMLST) reveals geographic population structure of Ixodes ricinus ticks

Dinnis, R. E., Seelig, F., Bormane, A., Donaghy, M., Vollmer, S. A., Feil, E. J., Kurtenbach, K. & Margos, G., Mar 2014, In : Ticks and Tick-Borne Diseases. 5, 2, p. 152-160 9 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Multiple antibiotic resistance of heterotrophic bacteria isolated from Siberian lakes subjected to differing degrees of anthropogenic impact

Lobova, T. I., Feil, E. J. & Popova, L. Y., Dec 2011, In : Microbial Drug Resistance. 17, 4, p. 583-591 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Phylogeny of Vibrio vulnificus from the analysis of the core-genome: Implications for intra-species taxonomy

Roig, F. J., González-Candelas, F., Sanjuán, E., Fouz, B., Feil, E. J., Llorens, C., Baker-Austin, C., Oliver, J. D., Danin-Poleg, Y., Gibas, C. J., Kashi, Y., Gulig, P. A., Morrison, S. S. & Amaro, C., 5 Jan 2018, In : Frontiers in Microbiology. 8, p. 1-13 13 p., 2613.

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

Castillo-ramirez, S., Corander, J., Marttinen, P., Aldeljawi, M., Hanage, W. P., Westh, H., Boye, K., Gulay, Z., Bentley, S. D., Parkhill, J., Holden, M. T. & Feil, E. J., 2012, In : Genome Biology. 13, 12, 14 p., R126.

Research output: Contribution to journalArticle

62 Citations (Scopus)

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria.

Thorpe, H., Bayliss, S., Sheppard, S. & Feil, E., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-11 11 p., giy015.

Research output: Contribution to journalArticle

Open Access
16 Citations (Scopus)

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

Bayliss, S. C., Thorpe, H. A., Coyle, N. M., Sheppard, S. K. & Feil, E. J., 1 Oct 2019, In : GigaScience. 8, 10, p. 1-9 9 p., giz119.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Population biology of Gram-positive pathogens: high-risk clones for dissemination of antibiotic resistance

Willems, R. J. L., Hanage, W. P., Bessen, D. E. & Feil, E. J., Sep 2011, In : FEMS Microbiology Reviews. 35, 5, p. 872-900 29 p.

Research output: Contribution to journalArticle

139 Citations (Scopus)

Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns

Donker, T., Reuter, S., Sciberras, J., Reynolds, R., Brown, N., Torok, M. E., James, R., East of England Microbiology Research Network, Aanensen, D. M., Bentley, S. D., Holden, M. T. G., Parkhill, J., Spratt, B. G., Peacock, S. J., Feil, E. J. & Grundmann, H., 4 Jul 2017, In : Microbial Genomics. 3

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)