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Author

  • Edward Feil
2012

Diversity and recombination in Wolbachia and Cardinium from Bryobia spider mites

Ros, V. I. D., Fleming, V. M., Feil, E. J. & Breeuwer, J. A. J., 18 Jan 2012, In : BMC Microbiology. 12, Supplement 1, S13.

Research output: Contribution to journalArticle

34 Citations (Scopus)
2019

High tech research reveals preferential feeding in honey bees

Greco, M. K., Coates, B. & Feil, E. J., 2019, In : Journal of Apicultural Research. 58, 3, p. 471-477 7 p.

Research output: Contribution to journalArticle

2013

Spatial spread and demographic expansion of Lyme borreliosis spirochaetes in Eurasia

Vollmer, S. A., Feil, E. J., Raper, S. L., Kurtenbach, K., Chu, C-Y., Cao, W-C. & Margos, G., Mar 2013, In : Infection, Genetics and Evolution. 14, p. 147-155 9 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)
2012

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

Castillo-ramirez, S., Corander, J., Marttinen, P., Aldeljawi, M., Hanage, W. P., Westh, H., Boye, K., Gulay, Z., Bentley, S. D., Parkhill, J., Holden, M. T. & Feil, E. J., 2012, In : Genome Biology. 13, 12, 14 p., R126.

Research output: Contribution to journalArticle

62 Citations (Scopus)
2011

A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

Holt, D. C., Holden, M. T. G., Tong, S. Y. C., Castillo-Ramirez, S., Clarke, L., Quail, M. A., Currie, B. J., Parkhill, J., Bentley, S. D., Feil, E. J. & Giffard, P. M., 2011, In : Genome biology and evolution. 3, p. 881-895 15 p.

Research output: Contribution to journalArticle

98 Citations (Scopus)
2017

The use of Oxford Nanopore native barcoding for complete genome assembly

Bayliss, S. C., Hunt, V. L., Yokoyama, M., Thorpe, H. A. & Feil, E. J., 1 Mar 2017, In : GigaScience. 6, 3, p. 1-6 gix001.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Do antibiotics and antibiotic resistance genes play a role in enhancing antimicrobial resistance in wastewater?

Castrignano, E., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

Wastewater-based epidemiology as a powerful tool for helping to tackle antibiotic resistance

Castrignano, E., Elder, F., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

2020

The role of stereochemistry of antibiotic agents in the development of antibiotic resistance in the environment

Elder, F. C. T., Feil, E. J., Snape, J. N., Gaze, W. H. & Kasprzyk-Hordern, B. A., 30 Jun 2020, In : Environment International. 139, 105681.

Research output: Contribution to journalReview article

Open Access
2017

The promise of whole genome pathogen sequencing for the molecular epidemiology of emerging aquaculture pathogens

Bayliss, S. C., Verner-Jeffries, D. W., Bartie, K. L., Aanensen, D. M., Sheppard, S. K., Adams, A. & Feil, E. J., 3 Feb 2017, In : Frontiers in Microbiology. 8, 237708 .

Research output: Contribution to journalReview article

Open Access
20 Citations (Scopus)
2015

Evolutionary aspects of emerging lyme disease in Canada

Ogden, N. H., Feil, E. J., Leighton, P. A., Lindsay, L. R., Margos, G., Mechai, S., Michel, P. & Moriarty, T. J., Nov 2015, In : Applied and Environmental Microbiology. 81, 21, p. 7350-7359 10 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2017

Draft genome sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 new isolates belonging to the genus Salinivibrio

López-Hermoso, C., de la Haba, R. R., Cristina Sánchez-Porro, S-P., Bayliss, S. C., Feil, E. J. & Ventosa, A., 1 Jul 2017, In : Genome announcements. 5, 27, e00244-17.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
2013

The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria

Wellington, E. M. H., Boxall, A. B. A., Cross, P., Feil, E. J., Gaze, W. H., Hawkey, P. M., Johnson-Rollings, A. S., Jones, D. L., Lee, N. M., Otten, W., Thomas, C. M. & Williams, A. P., Feb 2013, In : The Lancet Infectious Diseases. 13, 2, p. 155-165 11 p.

Research output: Contribution to journalArticle

466 Citations (Scopus)
2019

Recent mixing of Vibrio parahaemolyticus populations

Yang, C., Pei, X., Wu, Y., Yan, L., Yan, Y., Song, Y., Coyle, N. M., Martinez-Urtaza, J., Quince, C., Hu, Q., Jiang, M., Feil, E., Yang, D., Song, Y., Zhou, D., Yang, R., Falush, D. & Cui, Y., 31 Oct 2019, In : ISME Journal. 13, 10, p. 2578-2588 11 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
13 Downloads (Pure)
2016

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
133 Downloads (Pure)
2018

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry

Bayliss, S. C., Verner-Jeffreys, D. W., Ryder, D., Suarez, R., Ramirez, R., Romero, J., Pascoe, B., Sheppard, S. K., Godoy, M. & Feil, E. J., 1 Sep 2018, In : Microbial Genomics. 4, 9, 12 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)
2020

High-resolution sweep metagenomics using fast probabilistic inference

Mäklin, T., Kallonen, T., David, S., Boinett, C. J., Pascoe, B., Méric, G., Aanensen, D. M., Feil, E. J., Baker, S., Parkhill, J., Sheppard, S. K., Corander, J. & Honkela, A., 30 Jan 2020, In : Wellcome Open Research. 5, p. 14

Research output: Contribution to journalArticle

Open Access
2013

Sugar concentration influences decision making in Apis mellifera L. workers during early-stage honey storage behaviour

Greco, M. K., Lang, J., Gallmann, P., Priest, N., Feil, E. & Crailsheim, K., 2013, In : Open Journal of Animal Sciences. 3, 3, p. 210-218

Research output: Contribution to journalArticle

Open Access
File
83 Downloads (Pure)
2016

Whole-genome sequencing for routine pathogen surveillance in Public Health: a population snapshot of invasive staphylococcus aureus in Europe

ESCMID Study Group on Molecular Epidemiological Markers (ESGEM) & European Staphylococcal Reference Laboratory Working Group, 30 Jun 2016, In : mBio. 7, 3, 15 p., e00444-16.

Research output: Contribution to journalArticle

Open Access
File
95 Citations (Scopus)
90 Downloads (Pure)
2018

The distribution of bacterial doubling times in the wild

Gibson, B., Wilson, D. J., Feil, E. & Eyre-Walker, A., 30 Jun 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1880, p. 1-9 9 p., 20180789.

Research output: Contribution to journalArticle

Open Access
28 Citations (Scopus)
2020

Corrigendum to “Enantiomeric profiling of quinolones and quinolones resistance gene qnrS in European wastewaters” [Water Res. 175 (2020) 115653] (Water Research (2020) 175, (S0043135420301895), (10.1016/j.watres.2020.115653))

Castrignano, E., Yang, Z., Feil, E. J., Bade, R., Castiglioni, S., Causanilles, A., Gracia-Lor, E., Hernandez, F., Plόszi, B. G., Ramin, P., Rousis, N. I., Ryu, Y., Thomas, K. V., de Voogt, P., Zuccato, E. & Kasprzyk-Hordern, B., 1 Sep 2020, In : Water Research. 182, 116345.

Research output: Contribution to journalComment/debate

2012

The emergence and spread of dysentery

Feil, E. J., Sep 2012, In : Nature Genetics. 44, 9, p. 964-965

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
217 Downloads (Pure)
2011

Investigation of Genotypes of Borrelia burgdorferi in Ixodes scapularis Ticks Collected during Surveillance in Canada

Ogden, N. H., Margos, G., Aanensen, D. M., Drebot, M. A., Feil, E. J., Hanincova, K., Schwartz, I., Tyler, S. & Lindsay, L. R., May 2011, In : Applied and Environmental Microbiology. 77, 10, p. 3244-3254 11 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)
2016

Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing

Senghore, M., Bayliss, S., Kwambana-Adams, B., Foster-Nyarko, E., Menneh, J., Dione, M., Badji, H., Ebruke, C., Doughty, E., Thorpe, H. A. F. W., Jasinska, A., Schmitt, C., Cramer, J., Turner, T., Weinstock, G., Freimer, N., Pallen, M., Feil, E. & Antonio, M., Oct 2016, In : Applied and Environmental Microbiology. 82, 19, p. 5910-5917 8 p.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)
2013

Investigation of the population structure of the tick vector of lyme disease Ixodes scapularis (Acari:Ixodidae) in Canada using mitochondrial cytochrome C oxidase subunit I gene sequences

Mechai, S., Feil, E. J., Gariepy, T. D., Gregory, T. R., Lindsay, L. R., Millien, V. & Ogden, N. H., May 2013, In : Journal of Medical Entomology. 50, 3, p. 560-570

Research output: Contribution to journalArticle

15 Citations (Scopus)
2016

The impact of host metapopulation structure on the population genetics of colonizing bacteria

Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., van Schaik, W., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2015

Toward a synthesis of genotypic typing and phenotypic inference in the genomics era

Feil, E. J., 1 Dec 2015, In : Future Microbiology. 10, 12, p. 1897-1899 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2011

Comparison of two multilocus sequence based genotyping schemes for Leptospira species

Ahmed, A., Thaipadungpanit, J., Boonsilp, S., Wuthiekanun, V., Nalam, K., Spratt, B. G., Aanensen, D. M., Smythe, L. D., Ahmed, N., Feil, E. J., Hartskeerl, R. A. & Peacock, S. J., 2011, In : PLoS Neglected Tropical Diseases. 5, 11, e1374.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2016

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Chang, H. H., Dordel, J., Donker, T., Worby, C. J., Feil, E. J., Hanage, W. P., Bentley, S. D., Huang, S. S. & Lipsitch, M., 13 Feb 2016, In : Genome Medicine. 8, 18

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
2011

Population biology of Gram-positive pathogens: high-risk clones for dissemination of antibiotic resistance

Willems, R. J. L., Hanage, W. P., Bessen, D. E. & Feil, E. J., Sep 2011, In : FEMS Microbiology Reviews. 35, 5, p. 872-900 29 p.

Research output: Contribution to journalArticle

139 Citations (Scopus)

Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe

Vollmer, S. A., Bormane, A., Dinnis, R. E., Seelig, F., Dobson, A. D. M., Aanensen, D. M., James, M. C., Donaghy, M., Randolph, S. E., Feil, E. J., Kurtenbach, K. & Margos, G., Jan 2011, In : Environmental Microbiology. 13, 1, p. 184-192 9 p.

Research output: Contribution to journalArticle

73 Citations (Scopus)

The Impact of recombination on dN/dS within recently emerged bacterial clones

Castillo-Ramirez, S., Harris, S. R., Holden, M. T. G., He, M., Parkhill, J., Bentley, S. D. & Feil, E. J., 14 Jul 2011, In : PLoS Pathogens. 7, 7, 13 p., e1002129.

Research output: Contribution to journalArticle

63 Citations (Scopus)
2015

Alternative splice in alternative lice

Tovar-Corona, J. M., Castillo-Morales, A., Chen, L., Olds, B. P., Clark, J. M., Reynolds, S. E., Pittendrigh, B. R., Feil, E. J. & Urrutia, A. O., 1 Oct 2015, In : Molecular Biology and Evolution. 32, 10, p. 2749-2759 11 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)
2018

Gene exchange drives the ecological success of a multi-host bacterial pathogen

Richardson, E. J., Bacigalupe, R., Harrison, E. M., Weinert, L. A., Lycett, S., Vrieling, M., Robb, K., Hoskisson, P. A., Holden, M. T. G., Feil, E. J., Paterson, G. K., Tong, S. Y. C., Shittu, A., van Wamel, W., Aanensen, D. M., Parkhill, J., Peacock, S. J., Corander, J., Holmes, M. & Fitzgerald, J. R., 1 Sep 2018, In : Nature Ecology and Evolution. 2, 9, p. 1468-1478 11 p.

Research output: Contribution to journalArticle

Open Access
27 Citations (Scopus)
2016

‘Resistance-proof’ antibiotics may never exist – but there are some promising alternatives

Gebhard, S. & Feil, E., 8 Mar 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
20 Citations (Scopus)
294 Downloads (Pure)
2019

WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome

Pinholt, M., Bayliss, S. C., Gumpert, H., Worning, P., Jensen, V. V. S., Pedersen, M., Feil, E. J. & Westh, H., 1 Jul 2019, In : Journal of Antimicrobial Chemotherapy. 74, 7, p. 1776-1785 10 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
1 Downloads (Pure)
2017

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Pinholt, M., Gumpert, H., Bayliss, S., Nielsen, J. B., Vorobieva, V., Pedersen, M., Feil, E., Worning, P. & Westh, H., 1 Jan 2017, In : Journal of Antimicrobial Chemotherapy. 72, 1, p. 40-47 8 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2018
Open Access
12 Citations (Scopus)

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria.

Thorpe, H., Bayliss, S., Sheppard, S. & Feil, E., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-11 11 p., giy015.

Research output: Contribution to journalArticle

Open Access
16 Citations (Scopus)
2017

The Evolution and Dynamics of Methicillin-Resistant Staphylococcus aureus

Abdelbary, M. M. H., Basset, P., Blanc, D. S. & Feil, E. J., 8 Feb 2017, Genetics and Evolution of Infectious Diseases (2nd Ed.). Tibayrenc, M. (ed.). Elsevier, p. 553-572 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)
2016

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Reuter, S., Estee Torok, M., Holden, M. T. G., Reynolds, R., Raven, K. E., Blane, B., Donker, T., Bentley, S. D., Aanensen, D. M., Grundmann, H., Feil, E. J., Spratt, B. G., Parkhill, J. & Peacock, S. J., 1 Feb 2016, In : Genome Research. 26, 2, p. 263-270 8 p.

Research output: Contribution to journalArticle

Open Access
File
31 Citations (Scopus)
121 Downloads (Pure)
2015

Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis

Méric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. & 1 others, Sheppard, S. K., May 2015, In : Genome biology and evolution. 7, 5, p. 1313-1328 16 p.

Research output: Contribution to journalArticle

Open Access
58 Citations (Scopus)
2019

Description of klebsiella spallanzanii sp. Nov. and of klebsiella pasteurii sp. nov.

Merla, C., Rodrigues, C., Passet, V., Corbella, M., Thorpe, H. A., Kallonen, T. V. S., Zong, Z., Marone, P., Bandi, C., Sassera, D., Corander, J., Feil, E. J. & Brisse, S., 25 Oct 2019, In : Frontiers in Microbiology. 10, p. 1-9 9 p., 2360.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
2012

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

Mcadam, P. R., Templeton, K. E., Edwards, G. F., Holden, M. T. G., Feil, E. J., Aanensen, D. M., Bargawi, H. J. A., Spratt, B. G., Bentley, S. D., Parkhill, J., Enright, M. C., Holmes, A., Girvan, E. K., Godfrey, P. A., Feldgarden, M., Kearns, A. M., Rambaut, A., Robinson, D. A. & Fitzgerald, J. R., 5 Jun 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 23, p. 9107-9112

Research output: Contribution to journalArticle

Open Access
File
113 Citations (Scopus)
149 Downloads (Pure)
2015

Evolutionary trade-offs underlie the multi-faceted virulence of staphylococcus aureus

Laabei, M., Uhlemann, A-C., Lowy, F. D., Austin, E. D., Yokoyama, M., Ouadi, K., Feil, E., Thorpe, H. A., Williams, B. G., Perkins, M., Peacock, S. J., Clarke, S. R., Dordel, J., Holden, M., Votintseva, A. A., Bowden, R., Crook, D. W., Young, B. C., Wilson, D. J., Recker, M. & 1 others, Massey, R. C., 30 Sep 2015, In : PLoS Biology. 13, 9, p. 1-21 21 p., e1002229.

Research output: Contribution to journalArticle

Open Access
56 Citations (Scopus)
40 Downloads (Pure)
2013

Threats to an ecosystem service: Pressures on pollinators

Vanbergen, A. J., Baude, M., Biesmeijer, J. C., Britton, N. F., Brown, M. J. F., Bryden, J., Budge, G. E., Bull, J. C., Carvell, C., Challinor, A. J., Connolly, C. N., Evans, D. J., Feil, E. J., Garratt, M. P., Greco, M. K., Heard, M. S., Jansen, V. A. A., Keeling, M. J., Kunin, W. E., Marris, G. C. & 19 others, Memmott, J., Murray, J. T., Nicolson, S. W., Osborne, J. L., Paxton, R. J., Pirk, C. W. W., Polce, C., Potts, S. G., Priest, N. K., Raine, N. E., Roberts, S., Ryabov, E. V., Shafir, S., Shirley, M. D. F., Simpson, S. J., Stevenson, P. C., Stone, G. N., Termansen, M. & Wright, G. A., Jun 2013, In : Frontiers in Ecology and the Environment. 11, 5, p. 251-259 9 p.

Research output: Contribution to journalArticle

Open Access
File
514 Citations (Scopus)
199 Downloads (Pure)

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset

Shepheard, M. A., Fleming, V. M., Connor, T. R., Corander, J., Feil, E. J., Fraser, C. & Hanage, W. P., 7 May 2013, In : PLoS ONE. 8, 5, 62369.

Research output: Contribution to journalArticle

Open Access
File
30 Citations (Scopus)
92 Downloads (Pure)
2011

Atypical AT skew in firmicute genomes results from selection and not from mutation

Charneski, C. A., Honti, F., Bryant, J. M., Hurst, L. D. & Feil, E. J., 15 Sep 2011, In : Plos Genetics. 7, 9, 14 p., e1002283.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2018

The importance of cross-disciplinary research to combat antimicrobial resistance: Introducing a new pop-up journal, X-AMR

Knight, G., Lambert, H., Feil, E., Holmes, M. & Lindsay, J., 1 Aug 2018, In : Microbiology (United Kingdom). 4, 7, p. 1-2 2 p., 000684.

Research output: Contribution to journalEditorial

Open Access