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Author

  • Edward Feil
2016

The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus

Senn, L., Clerc, O., Zanetti, G., Basset, P., Prod'hom, G., Gordon, N., Sheppard, A., Crook, D., James, R., Thorpe, H. A. F. W., Feil, E. & Blanc, D., 28 Feb 2016, In : mBio. 7, 1, p. 1-9 9 p., e02039-15.

Research output: Contribution to journalArticle

Open Access
36 Citations (Scopus)
44 Downloads (Pure)
2011

A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

Holt, D. C., Holden, M. T. G., Tong, S. Y. C., Castillo-Ramirez, S., Clarke, L., Quail, M. A., Currie, B. J., Parkhill, J., Bentley, S. D., Feil, E. J. & Giffard, P. M., 2011, In : Genome biology and evolution. 3, p. 881-895 15 p.

Research output: Contribution to journalArticle

95 Citations (Scopus)
2012

Diversity and recombination in Wolbachia and Cardinium from Bryobia spider mites

Ros, V. I. D., Fleming, V. M., Feil, E. J. & Breeuwer, J. A. J., 18 Jan 2012, In : BMC Microbiology. 12, Supplement 1, S13.

Research output: Contribution to journalArticle

34 Citations (Scopus)
2014

Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius

Budge, G. E., Shirley, M. D. F., Jones, B., Quill, E., Tomkies, V., Feil, E. J., Brown, M. A. & Haynes, E. G., Aug 2014, In : ISME Journal. 8, p. 1588-1597 10 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens

Castillo-Ramirez, S. & Feil, E. J., 26 Nov 2014, Molecular Medical Microbiology. Tang, Y-W., Sussman, M., Liu, D., Poxton, I. & Schwartzman, J. (eds.). Second ed. Elsevier, Vol. 1. p. 337-345 9 p. Chapter 18

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
20 Citations (Scopus)
277 Downloads (Pure)
2020

Monitoring Infectious Diseases in Near-Real-Time for Rapid Outbreak Response

Boxall-Clasby, J., Kasprzyk-Hordern, B., Estrela, P., Feil, E. & Barden, R., 2020, (In preparation).

Research output: Contribution to conferencePoster

2014

Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements

Brynildsrud, O., Feil, E. J., Bohlin, J., Castillo-Ramirez, S., Colquhoun, D., McCarthy, U., Matejusova, I. M., Rhodes, L. D., Wiens, G. D. & Verner-Jeffreys, D. W., 30 Apr 2014, In : ISME Journal. 8, p. 746-756 11 p.

Research output: Contribution to journalArticle

Open Access
20 Citations (Scopus)
2019

High tech research reveals preferential feeding in honey bees

Greco, M. K., Coates, B. & Feil, E. J., 2019, In : Journal of Apicultural Research. 58, 3, p. 471-477 7 p.

Research output: Contribution to journalArticle

2014

Predicting the virulence of MRSA from its genome sequence

Laabei, M., Recker, M., Rudkin, J. K., Aldeljawi, M., Gulay, Z., Sloan, T. J., Williams, P., Endres, J. L., Bayles, K. W., Fey, P. D., Yajjala, V. K., Widhelm, T., Hawkins, E., Lewis, K., Parfett, S., Scowen, L., Peacock, S. J., Holden, M., Wilson, D., Read, T. D. & 6 others, Van Den Elsen, J., Priest, N. K., Feil, E. J., Hurst, L. D., Josefsson, E. & Massey, R. C., 1 May 2014, In : Genome Research. 24, 5, p. 839-849 11 p.

Research output: Contribution to journalArticle

Open Access
83 Citations (Scopus)
59 Downloads (Pure)
2012

The emergence and spread of dysentery

Feil, E. J., Sep 2012, In : Nature Genetics. 44, 9, p. 964-965

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
209 Downloads (Pure)
2013

Spatial spread and demographic expansion of Lyme borreliosis spirochaetes in Eurasia

Vollmer, S. A., Feil, E. J., Raper, S. L., Kurtenbach, K., Chu, C-Y., Cao, W-C. & Margos, G., Mar 2013, In : Infection, Genetics and Evolution. 14, p. 147-155 9 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)
2020

Enantiomeric profiling of quinolones and quinolones resistance gene qnrS in European wastewaters

Castrignanò, E., Yang, Z., Feil, E. J., Bade, R., Castiglioni, S., Causanilles, A., Gracia-Lor, E., Hernandez, F., Plósz, B. G., Ramin, P., Rousis, N. I., Ryu, Y., Thomas, K. V., de Voogt, P., Zuccato, E. & Kasprzyk-Hordern, B., 15 May 2020, In : Water Research. 175, p. 115653 115653.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2013

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset

Shepheard, M. A., Fleming, V. M., Connor, T. R., Corander, J., Feil, E. J., Fraser, C. & Hanage, W. P., 7 May 2013, In : PLoS ONE. 8, 5, 62369.

Research output: Contribution to journalArticle

Open Access
File
30 Citations (Scopus)
89 Downloads (Pure)
2017

Enterobacteriaceae: joining the dots with pan-European epidemiology

Feil, E. J., 1 Feb 2017, In : The Lancet Infectious Diseases. 17, 2, p. 118-119 2 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)
2013

Threats to an ecosystem service: Pressures on pollinators

Vanbergen, A. J., Baude, M., Biesmeijer, J. C., Britton, N. F., Brown, M. J. F., Bryden, J., Budge, G. E., Bull, J. C., Carvell, C., Challinor, A. J., Connolly, C. N., Evans, D. J., Feil, E. J., Garratt, M. P., Greco, M. K., Heard, M. S., Jansen, V. A. A., Keeling, M. J., Kunin, W. E., Marris, G. C. & 19 others, Memmott, J., Murray, J. T., Nicolson, S. W., Osborne, J. L., Paxton, R. J., Pirk, C. W. W., Polce, C., Potts, S. G., Priest, N. K., Raine, N. E., Roberts, S., Ryabov, E. V., Shafir, S., Shirley, M. D. F., Simpson, S. J., Stevenson, P. C., Stone, G. N., Termansen, M. & Wright, G. A., Jun 2013, In : Frontiers in Ecology and the Environment. 11, 5, p. 251-259 9 p.

Research output: Contribution to journalArticle

Open Access
File
502 Citations (Scopus)
190 Downloads (Pure)
2018

Phylogeny of Vibrio vulnificus from the analysis of the core-genome: Implications for intra-species taxonomy

Roig, F. J., González-Candelas, F., Sanjuán, E., Fouz, B., Feil, E. J., Llorens, C., Baker-Austin, C., Oliver, J. D., Danin-Poleg, Y., Gibas, C. J., Kashi, Y., Gulig, P. A., Morrison, S. S. & Amaro, C., 5 Jan 2018, In : Frontiers in Microbiology. 8, p. 1-13 13 p., 2613.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)
2019

Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland

Al-Khafaji, A. M., Clegg, S. R., Pinder, A. C., Luu, L., Hansford, K. M., Seelig, F., Dinnis, R. E., Margos, G., Medlock, J. M., Feil, E. J., Darby, A. C., McGarry, J. W., Gilbert, L., Plantard, O., Sassera, D. & Makepeace, B. L., 1 Jan 2019, In : Ticks and Tick-Borne Diseases. 10, 1, p. 52-62 11 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Description of klebsiella spallanzanii sp. Nov. and of klebsiella pasteurii sp. nov.

Merla, C., Rodrigues, C., Passet, V., Corbella, M., Thorpe, H. A., Kallonen, T. V. S., Zong, Z., Marone, P., Bandi, C., Sassera, D., Corander, J., Feil, E. J. & Brisse, S., 25 Oct 2019, In : Frontiers in Microbiology. 10, p. 1-9 9 p., 2360.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
2017

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Pinholt, M., Gumpert, H., Bayliss, S., Nielsen, J. B., Vorobieva, V., Pedersen, M., Feil, E., Worning, P. & Westh, H., 1 Jan 2017, In : Journal of Antimicrobial Chemotherapy. 72, 1, p. 40-47 8 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2013

A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species

Boonsilp, S., Thaipadungpanit, J., Amornchai, P., Wuthiekanun, V., Bailey, M. S., Holden, M. T. G., Zhang, C., Jiang, X., Koizumi, N., Taylor, K., Galloway, R., Hoffmaster, A. R., Craig, S., Smythe, L. D., Hartskeerl, R. A., Day, N. P., Chantratita, N., Feil, E. J., Aanensen, D. M., Spratt, B. G. & 1 others, Peacock, S. J., Jan 2013, In : PLoS Neglected Tropical Diseases. 7, 1, 1954.

Research output: Contribution to journalArticle

Open Access
File
89 Citations (Scopus)
134 Downloads (Pure)
2016

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
127 Downloads (Pure)
2015

Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis

Méric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. & 1 others, Sheppard, S. K., May 2015, In : Genome biology and evolution. 7, 5, p. 1313-1328 16 p.

Research output: Contribution to journalArticle

Open Access
56 Citations (Scopus)
2011

Investigation of Genotypes of Borrelia burgdorferi in Ixodes scapularis Ticks Collected during Surveillance in Canada

Ogden, N. H., Margos, G., Aanensen, D. M., Drebot, M. A., Feil, E. J., Hanincova, K., Schwartz, I., Tyler, S. & Lindsay, L. R., May 2011, In : Applied and Environmental Microbiology. 77, 10, p. 3244-3254 11 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)
2014

Multilocus sequence typing using mitochondrial genes (mtMLST) reveals geographic population structure of Ixodes ricinus ticks

Dinnis, R. E., Seelig, F., Bormane, A., Donaghy, M., Vollmer, S. A., Feil, E. J., Kurtenbach, K. & Margos, G., Mar 2014, In : Ticks and Tick-Borne Diseases. 5, 2, p. 152-160 9 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2016

Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing

Senghore, M., Bayliss, S., Kwambana-Adams, B., Foster-Nyarko, E., Menneh, J., Dione, M., Badji, H., Ebruke, C., Doughty, E., Thorpe, H. A. F. W., Jasinska, A., Schmitt, C., Cramer, J., Turner, T., Weinstock, G., Freimer, N., Pallen, M., Feil, E. & Antonio, M., Oct 2016, In : Applied and Environmental Microbiology. 82, 19, p. 5910-5917 8 p.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)
2013

Investigation of the population structure of the tick vector of lyme disease Ixodes scapularis (Acari:Ixodidae) in Canada using mitochondrial cytochrome C oxidase subunit I gene sequences

Mechai, S., Feil, E. J., Gariepy, T. D., Gregory, T. R., Lindsay, L. R., Millien, V. & Ogden, N. H., May 2013, In : Journal of Medical Entomology. 50, 3, p. 560-570

Research output: Contribution to journalArticle

15 Citations (Scopus)
2016

The impact of host metapopulation structure on the population genetics of colonizing bacteria

Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., van Schaik, W., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2020

(Fluoro)quinolones and quinolone resistance genes in the aquatic environment: A river catchment perspective

Castrignanò, E., Kannan, A. M., Proctor, K., Petrie, B., Hodgen, S., Feil, E. J., Lewis, S. E., Lopardo, L., Camacho-Muñoz, D., Rice, J., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 6 Jun 2020, In : Water Research. 182, 116015.

Research output: Contribution to journalArticle

2015

Toward a synthesis of genotypic typing and phenotypic inference in the genomics era

Feil, E. J., 1 Dec 2015, In : Future Microbiology. 10, 12, p. 1897-1899 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2016

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Reuter, S., Estee Torok, M., Holden, M. T. G., Reynolds, R., Raven, K. E., Blane, B., Donker, T., Bentley, S. D., Aanensen, D. M., Grundmann, H., Feil, E. J., Spratt, B. G., Parkhill, J. & Peacock, S. J., 1 Feb 2016, In : Genome Research. 26, 2, p. 263-270 8 p.

Research output: Contribution to journalArticle

Open Access
File
31 Citations (Scopus)
116 Downloads (Pure)
2011

Comparison of two multilocus sequence based genotyping schemes for Leptospira species

Ahmed, A., Thaipadungpanit, J., Boonsilp, S., Wuthiekanun, V., Nalam, K., Spratt, B. G., Aanensen, D. M., Smythe, L. D., Ahmed, N., Feil, E. J., Hartskeerl, R. A. & Peacock, S. J., 2011, In : PLoS Neglected Tropical Diseases. 5, 11, e1374.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2018

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria.

Thorpe, H., Bayliss, S., Sheppard, S. & Feil, E., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-11 11 p., giy015.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
2017

The promise of whole genome pathogen sequencing for the molecular epidemiology of emerging aquaculture pathogens

Bayliss, S. C., Verner-Jeffries, D. W., Bartie, K. L., Aanensen, D. M., Sheppard, S. K., Adams, A. & Feil, E. J., 3 Feb 2017, In : Frontiers in Microbiology. 8, 237708 .

Research output: Contribution to journalReview article

Open Access
20 Citations (Scopus)
2018

Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones

Tyler, S., Tyson, S., Dibernardo, A., Drebot, M., Feil, E. J., Graham, M., Knox, N. C., Lindsay, L. R., Margos, G., Mechai, S., Van Domselaar, G., Thorpe, H. A. & Ogden, N. H., 12 Jul 2018, In : Scientific Reports. 8, 1, p. 1-12 12 p., 10552.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)
2019

Recent mixing of Vibrio parahaemolyticus populations

Yang, C., Pei, X., Wu, Y., Yan, L., Yan, Y., Song, Y., Coyle, N. M., Martinez-Urtaza, J., Quince, C., Hu, Q., Jiang, M., Feil, E., Yang, D., Song, Y., Zhou, D., Yang, R., Falush, D. & Cui, Y., 31 Oct 2019, In : ISME Journal. 13, 10, p. 2578-2588 11 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
12 Downloads (Pure)

WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome

Pinholt, M., Bayliss, S. C., Gumpert, H., Worning, P., Jensen, V. V. S., Pedersen, M., Feil, E. J. & Westh, H., 1 Jul 2019, In : Journal of Antimicrobial Chemotherapy. 74, 7, p. 1776-1785 10 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
2016

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Chang, H. H., Dordel, J., Donker, T., Worby, C. J., Feil, E. J., Hanage, W. P., Bentley, S. D., Huang, S. S. & Lipsitch, M., 13 Feb 2016, In : Genome Medicine. 8, 18

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
2015

Evolutionary aspects of emerging lyme disease in Canada

Ogden, N. H., Feil, E. J., Leighton, P. A., Lindsay, L. R., Margos, G., Mechai, S., Michel, P. & Moriarty, T. J., Nov 2015, In : Applied and Environmental Microbiology. 81, 21, p. 7350-7359 10 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
2011

Population biology of Gram-positive pathogens: high-risk clones for dissemination of antibiotic resistance

Willems, R. J. L., Hanage, W. P., Bessen, D. E. & Feil, E. J., Sep 2011, In : FEMS Microbiology Reviews. 35, 5, p. 872-900 29 p.

Research output: Contribution to journalArticle

139 Citations (Scopus)
2013

The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria

Wellington, E. M. H., Boxall, A. B. A., Cross, P., Feil, E. J., Gaze, W. H., Hawkey, P. M., Johnson-Rollings, A. S., Jones, D. L., Lee, N. M., Otten, W., Thomas, C. M. & Williams, A. P., Feb 2013, In : The Lancet Infectious Diseases. 13, 2, p. 155-165 11 p.

Research output: Contribution to journalArticle

456 Citations (Scopus)
2011

Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe

Vollmer, S. A., Bormane, A., Dinnis, R. E., Seelig, F., Dobson, A. D. M., Aanensen, D. M., James, M. C., Donaghy, M., Randolph, S. E., Feil, E. J., Kurtenbach, K. & Margos, G., Jan 2011, In : Environmental Microbiology. 13, 1, p. 184-192 9 p.

Research output: Contribution to journalArticle

73 Citations (Scopus)
2012

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

Mcadam, P. R., Templeton, K. E., Edwards, G. F., Holden, M. T. G., Feil, E. J., Aanensen, D. M., Bargawi, H. J. A., Spratt, B. G., Bentley, S. D., Parkhill, J., Enright, M. C., Holmes, A., Girvan, E. K., Godfrey, P. A., Feldgarden, M., Kearns, A. M., Rambaut, A., Robinson, D. A. & Fitzgerald, J. R., 5 Jun 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 23, p. 9107-9112

Research output: Contribution to journalArticle

Open Access
File
112 Citations (Scopus)
145 Downloads (Pure)
2020

The role of stereochemistry of antibiotic agents in the development of antibiotic resistance in the environment

Elder, F. C. T., Feil, E. J., Snape, J. N., Gaze, W. H. & Kasprzyk-Hordern, B. A., 30 Jun 2020, In : Environment International. 139, 105681.

Research output: Contribution to journalReview article

Open Access
2011

The Impact of recombination on dN/dS within recently emerged bacterial clones

Castillo-Ramirez, S., Harris, S. R., Holden, M. T. G., He, M., Parkhill, J., Bentley, S. D. & Feil, E. J., 14 Jul 2011, In : PLoS Pathogens. 7, 7, 13 p., e1002129.

Research output: Contribution to journalArticle

62 Citations (Scopus)
2016

Whole-genome sequencing for routine pathogen surveillance in Public Health: a population snapshot of invasive staphylococcus aureus in Europe

ESCMID Study Group on Molecular Epidemiological Markers (ESGEM) & European Staphylococcal Reference Laboratory Working Group, 30 Jun 2016, In : mBio. 7, 3, 15 p., e00444-16.

Research output: Contribution to journalArticle

Open Access
File
94 Citations (Scopus)
83 Downloads (Pure)
2017

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2013

Sugar concentration influences decision making in Apis mellifera L. workers during early-stage honey storage behaviour

Greco, M. K., Lang, J., Gallmann, P., Priest, N., Feil, E. & Crailsheim, K., 2013, In : Open Journal of Animal Sciences. 3, 3, p. 210-218

Research output: Contribution to journalArticle

Open Access
File
79 Downloads (Pure)
2012

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

Castillo-ramirez, S., Corander, J., Marttinen, P., Aldeljawi, M., Hanage, W. P., Westh, H., Boye, K., Gulay, Z., Bentley, S. D., Parkhill, J., Holden, M. T. & Feil, E. J., 2012, In : Genome Biology. 13, 12, 14 p., R126.

Research output: Contribution to journalArticle

62 Citations (Scopus)
2017

Wastewater-based epidemiology as a powerful tool for helping to tackle antibiotic resistance

Castrignano, E., Elder, F., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster