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  • Edward Feil
2011

Atypical AT skew in firmicute genomes results from selection and not from mutation

Charneski, C. A., Honti, F., Bryant, J. M., Hurst, L. D. & Feil, E. J., 15 Sep 2011, In : Plos Genetics. 7, 9, 14 p., e1002283.

Research output: Contribution to journalArticle

11 Citations (Scopus)

A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

Holt, D. C., Holden, M. T. G., Tong, S. Y. C., Castillo-Ramirez, S., Clarke, L., Quail, M. A., Currie, B. J., Parkhill, J., Bentley, S. D., Feil, E. J. & Giffard, P. M., 2011, In : Genome biology and evolution. 3, p. 881-895 15 p.

Research output: Contribution to journalArticle

94 Citations (Scopus)

Comparison of two multilocus sequence based genotyping schemes for Leptospira species

Ahmed, A., Thaipadungpanit, J., Boonsilp, S., Wuthiekanun, V., Nalam, K., Spratt, B. G., Aanensen, D. M., Smythe, L. D., Ahmed, N., Feil, E. J., Hartskeerl, R. A. & Peacock, S. J., 2011, In : PLoS Neglected Tropical Diseases. 5, 11, e1374.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe

Vollmer, S. A., Bormane, A., Dinnis, R. E., Seelig, F., Dobson, A. D. M., Aanensen, D. M., James, M. C., Donaghy, M., Randolph, S. E., Feil, E. J., Kurtenbach, K. & Margos, G., Jan 2011, In : Environmental Microbiology. 13, 1, p. 184-192 9 p.

Research output: Contribution to journalArticle

71 Citations (Scopus)

Investigation of Genotypes of Borrelia burgdorferi in Ixodes scapularis Ticks Collected during Surveillance in Canada

Ogden, N. H., Margos, G., Aanensen, D. M., Drebot, M. A., Feil, E. J., Hanincova, K., Schwartz, I., Tyler, S. & Lindsay, L. R., May 2011, In : Applied and Environmental Microbiology. 77, 10, p. 3244-3254 11 p.

Research output: Contribution to journalArticle

63 Citations (Scopus)

Multiple antibiotic resistance of heterotrophic bacteria isolated from Siberian lakes subjected to differing degrees of anthropogenic impact

Lobova, T. I., Feil, E. J. & Popova, L. Y., Dec 2011, In : Microbial Drug Resistance. 17, 4, p. 583-591 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Population biology of Gram-positive pathogens: high-risk clones for dissemination of antibiotic resistance

Willems, R. J. L., Hanage, W. P., Bessen, D. E. & Feil, E. J., Sep 2011, In : FEMS Microbiology Reviews. 35, 5, p. 872-900 29 p.

Research output: Contribution to journalArticle

134 Citations (Scopus)

The Impact of recombination on dN/dS within recently emerged bacterial clones

Castillo-Ramirez, S., Harris, S. R., Holden, M. T. G., He, M., Parkhill, J., Bentley, S. D. & Feil, E. J., 14 Jul 2011, In : PLoS Pathogens. 7, 7, 13 p., e1002129.

Research output: Contribution to journalArticle

59 Citations (Scopus)
2012

Diversity and recombination in Wolbachia and Cardinium from Bryobia spider mites

Ros, V. I. D., Fleming, V. M., Feil, E. J. & Breeuwer, J. A. J., 18 Jan 2012, In : BMC Microbiology. 12, Supplement 1, S13.

Research output: Contribution to journalArticle

32 Citations (Scopus)

From genotype to phenotype: can systems biology be used to predict Staphylococcus aureus virulence?

Priest, N. K., Rudkin, J. K., Feil, E. J., Van Den Elsen, J. M. H., Cheung, A., Peacock, S. J., Laabei, M., Lucks, D. A., Recker, M. & Massey, R. C., Nov 2012, In : Nature Reviews Microbiology. 10, 11, p. 791-797 7 p.

Research output: Contribution to journalReview article

42 Citations (Scopus)

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

Mcadam, P. R., Templeton, K. E., Edwards, G. F., Holden, M. T. G., Feil, E. J., Aanensen, D. M., Bargawi, H. J. A., Spratt, B. G., Bentley, S. D., Parkhill, J., Enright, M. C., Holmes, A., Girvan, E. K., Godfrey, P. A., Feldgarden, M., Kearns, A. M., Rambaut, A., Robinson, D. A. & Fitzgerald, J. R., 5 Jun 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 23, p. 9107-9112

Research output: Contribution to journalArticle

Open Access
File
111 Citations (Scopus)
139 Downloads (Pure)

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

Castillo-ramirez, S., Corander, J., Marttinen, P., Aldeljawi, M., Hanage, W. P., Westh, H., Boye, K., Gulay, Z., Bentley, S. D., Parkhill, J., Holden, M. T. & Feil, E. J., 2012, In : Genome Biology. 13, 12, 14 p., R126.

Research output: Contribution to journalArticle

62 Citations (Scopus)

The emergence and spread of dysentery

Feil, E. J., Sep 2012, In : Nature Genetics. 44, 9, p. 964-965

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
201 Downloads (Pure)
2013

A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species

Boonsilp, S., Thaipadungpanit, J., Amornchai, P., Wuthiekanun, V., Bailey, M. S., Holden, M. T. G., Zhang, C., Jiang, X., Koizumi, N., Taylor, K., Galloway, R., Hoffmaster, A. R., Craig, S., Smythe, L. D., Hartskeerl, R. A., Day, N. P., Chantratita, N., Feil, E. J., Aanensen, D. M., Spratt, B. G. & 1 others, Peacock, S. J., Jan 2013, In : PLoS Neglected Tropical Diseases. 7, 1, 1954.

Research output: Contribution to journalArticle

Open Access
File
83 Citations (Scopus)
129 Downloads (Pure)

Genetic relationships of Vibrio parahaemolyticus isolates from clinical, human carrier, and environmental sources in Thailand, determined by multilocus sequence analysis

Theethakaew, C., Feil, E. J., Castillo-Ramírez, S., Aanensen, D. M., Suthienkul, O., Neil, D. M. & Davies, R. L., 1 Apr 2013, In : Applied and Environmental Microbiology. 79, 7, p. 2358-2370

Research output: Contribution to journalArticle

38 Citations (Scopus)

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset

Shepheard, M. A., Fleming, V. M., Connor, T. R., Corander, J., Feil, E. J., Fraser, C. & Hanage, W. P., 7 May 2013, In : PLoS ONE. 8, 5, 62369.

Research output: Contribution to journalArticle

Open Access
File
29 Citations (Scopus)
84 Downloads (Pure)

Investigation of the population structure of the tick vector of lyme disease Ixodes scapularis (Acari:Ixodidae) in Canada using mitochondrial cytochrome C oxidase subunit I gene sequences

Mechai, S., Feil, E. J., Gariepy, T. D., Gregory, T. R., Lindsay, L. R., Millien, V. & Ogden, N. H., May 2013, In : Journal of Medical Entomology. 50, 3, p. 560-570

Research output: Contribution to journalArticle

15 Citations (Scopus)

Spatial spread and demographic expansion of Lyme borreliosis spirochaetes in Eurasia

Vollmer, S. A., Feil, E. J., Raper, S. L., Kurtenbach, K., Chu, C-Y., Cao, W-C. & Margos, G., Mar 2013, In : Infection, Genetics and Evolution. 14, p. 147-155 9 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Sugar concentration influences decision making in Apis mellifera L. workers during early-stage honey storage behaviour

Greco, M. K., Lang, J., Gallmann, P., Priest, N., Feil, E. & Crailsheim, K., 2013, In : Open Journal of Animal Sciences. 3, 3, p. 210-218

Research output: Contribution to journalArticle

Open Access
File
76 Downloads (Pure)

The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria

Wellington, E. M. H., Boxall, A. B. A., Cross, P., Feil, E. J., Gaze, W. H., Hawkey, P. M., Johnson-Rollings, A. S., Jones, D. L., Lee, N. M., Otten, W., Thomas, C. M. & Williams, A. P., Feb 2013, In : The Lancet Infectious Diseases. 13, 2, p. 155-165 11 p.

Research output: Contribution to journalArticle

444 Citations (Scopus)

Threats to an ecosystem service: Pressures on pollinators

Vanbergen, A. J., Baude, M., Biesmeijer, J. C., Britton, N. F., Brown, M. J. F., Bryden, J., Budge, G. E., Bull, J. C., Carvell, C., Challinor, A. J., Connolly, C. N., Evans, D. J., Feil, E. J., Garratt, M. P., Greco, M. K., Heard, M. S., Jansen, V. A. A., Keeling, M. J., Kunin, W. E., Marris, G. C. & 19 others, Memmott, J., Murray, J. T., Nicolson, S. W., Osborne, J. L., Paxton, R. J., Pirk, C. W. W., Polce, C., Potts, S. G., Priest, N. K., Raine, N. E., Roberts, S., Ryabov, E. V., Shafir, S., Shirley, M. D. F., Simpson, S. J., Stevenson, P. C., Stone, G. N., Termansen, M. & Wright, G. A., Jun 2013, In : Frontiers in Ecology and the Environment. 11, 5, p. 251-259 9 p.

Research output: Contribution to journalArticle

Open Access
File
485 Citations (Scopus)
187 Downloads (Pure)
2014

Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements

Brynildsrud, O., Feil, E. J., Bohlin, J., Castillo-Ramirez, S., Colquhoun, D., McCarthy, U., Matejusova, I. M., Rhodes, L. D., Wiens, G. D. & Verner-Jeffreys, D. W., 30 Apr 2014, In : ISME Journal. 8, p. 746-756 11 p.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius

Budge, G. E., Shirley, M. D. F., Jones, B., Quill, E., Tomkies, V., Feil, E. J., Brown, M. A. & Haynes, E. G., Aug 2014, In : ISME Journal. 8, p. 1588-1597 10 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Multilocus sequence typing using mitochondrial genes (mtMLST) reveals geographic population structure of Ixodes ricinus ticks

Dinnis, R. E., Seelig, F., Bormane, A., Donaghy, M., Vollmer, S. A., Feil, E. J., Kurtenbach, K. & Margos, G., Mar 2014, In : Ticks and Tick-Borne Diseases. 5, 2, p. 152-160 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Predicting the virulence of MRSA from its genome sequence

Laabei, M., Recker, M., Rudkin, J. K., Aldeljawi, M., Gulay, Z., Sloan, T. J., Williams, P., Endres, J. L., Bayles, K. W., Fey, P. D., Yajjala, V. K., Widhelm, T., Hawkins, E., Lewis, K., Parfett, S., Scowen, L., Peacock, S. J., Holden, M., Wilson, D., Read, T. D. & 6 others, Van Den Elsen, J., Priest, N. K., Feil, E. J., Hurst, L. D., Josefsson, E. & Massey, R. C., 1 May 2014, In : Genome Research. 24, 5, p. 839-849 11 p.

Research output: Contribution to journalArticle

Open Access
80 Citations (Scopus)
59 Downloads (Pure)

Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens

Castillo-Ramirez, S. & Feil, E. J., 26 Nov 2014, Molecular Medical Microbiology. Tang, Y-W., Sussman, M., Liu, D., Poxton, I. & Schwartzman, J. (eds.). Second ed. Elsevier, Vol. 1. p. 337-345 9 p. Chapter 18

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Alternative splice in alternative lice

Tovar-Corona, J. M., Castillo-Morales, A., Chen, L., Olds, B. P., Clark, J. M., Reynolds, S. E., Pittendrigh, B. R., Feil, E. J. & Urrutia, A. O., 1 Oct 2015, In : Molecular Biology and Evolution. 32, 10, p. 2749-2759 11 p.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Complex population structure of Borrelia burgdorferi in southeastern and south central Canada as revealed by phylogeographic analysis

Mechai, S., Margos, G., Feil, E. J., Lindsay, L. R. & Ogden, N. H., Feb 2015, In : Applied and Environmental Microbiology. 81, 4, p. 1309-1318 10 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis

Méric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. & 1 others, Sheppard, S. K., May 2015, In : Genome biology and evolution. 7, 5, p. 1313-1328 16 p.

Research output: Contribution to journalArticle

Open Access
54 Citations (Scopus)

Evolutionary aspects of emerging lyme disease in Canada

Ogden, N. H., Feil, E. J., Leighton, P. A., Lindsay, L. R., Margos, G., Mechai, S., Michel, P. & Moriarty, T. J., Nov 2015, In : Applied and Environmental Microbiology. 81, 21, p. 7350-7359 10 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Evolutionary trade-offs underlie the multi-faceted virulence of staphylococcus aureus

Laabei, M., Uhlemann, A-C., Lowy, F. D., Austin, E. D., Yokoyama, M., Ouadi, K., Feil, E., Thorpe, H. A., Williams, B. G., Perkins, M., Peacock, S. J., Clarke, S. R., Dordel, J., Holden, M., Votintseva, A. A., Bowden, R., Crook, D. W., Young, B. C., Wilson, D. J., Recker, M. & 1 others, Massey, R. C., 30 Sep 2015, In : PLoS Biology. 13, 9, p. 1-21 21 p., e1002229.

Research output: Contribution to journalArticle

Open Access
54 Citations (Scopus)
40 Downloads (Pure)

Toward a synthesis of genotypic typing and phenotypic inference in the genomics era

Feil, E. J., 1 Dec 2015, In : Future Microbiology. 10, 12, p. 1897-1899 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2016

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
122 Downloads (Pure)

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Reuter, S., Estee Torok, M., Holden, M. T. G., Reynolds, R., Raven, K. E., Blane, B., Donker, T., Bentley, S. D., Aanensen, D. M., Grundmann, H., Feil, E. J., Spratt, B. G., Parkhill, J. & Peacock, S. J., 1 Feb 2016, In : Genome Research. 26, 2, p. 263-270 8 p.

Research output: Contribution to journalArticle

Open Access
File
29 Citations (Scopus)
113 Downloads (Pure)

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
19 Citations (Scopus)
272 Downloads (Pure)

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

Chang, H. H., Dordel, J., Donker, T., Worby, C. J., Feil, E. J., Hanage, W. P., Bentley, S. D., Huang, S. S. & Lipsitch, M., 13 Feb 2016, In : Genome Medicine. 8, 18

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

The impact of host metapopulation structure on the population genetics of colonizing bacteria

Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., van Schaik, W., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus

Senn, L., Clerc, O., Zanetti, G., Basset, P., Prod'hom, G., Gordon, N., Sheppard, A., Crook, D., James, R., Thorpe, H. A. F. W., Feil, E. & Blanc, D., 28 Feb 2016, In : mBio. 7, 1, p. 1-9 9 p., e02039-15.

Research output: Contribution to journalArticle

Open Access
36 Citations (Scopus)
44 Downloads (Pure)

Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing

Senghore, M., Bayliss, S., Kwambana-Adams, B., Foster-Nyarko, E., Menneh, J., Dione, M., Badji, H., Ebruke, C., Doughty, E., Thorpe, H. A. F. W., Jasinska, A., Schmitt, C., Cramer, J., Turner, T., Weinstock, G., Freimer, N., Pallen, M., Feil, E. & Antonio, M., Oct 2016, In : Applied and Environmental Microbiology. 82, 19, p. 5910-5917 8 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Whole-genome sequencing for routine pathogen surveillance in Public Health: a population snapshot of invasive staphylococcus aureus in Europe

ESCMID Study Group on Molecular Epidemiological Markers (ESGEM) & European Staphylococcal Reference Laboratory Working Group, 30 Jun 2016, In : mBio. 7, 3, 15 p., e00444-16.

Research output: Contribution to journalArticle

Open Access
File
89 Citations (Scopus)
78 Downloads (Pure)

‘Resistance-proof’ antibiotics may never exist – but there are some promising alternatives

Gebhard, S. & Feil, E., 8 Mar 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
2017

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Do antibiotics and antibiotic resistance genes play a role in enhancing antimicrobial resistance in wastewater?

Castrignano, E., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

Draft genome sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 new isolates belonging to the genus Salinivibrio

López-Hermoso, C., de la Haba, R. R., Cristina Sánchez-Porro, S-P., Bayliss, S. C., Feil, E. J. & Ventosa, A., 1 Jul 2017, In : Genome announcements. 5, 27, e00244-17.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Enterobacteriaceae: joining the dots with pan-European epidemiology

Feil, E. J., 1 Feb 2017, In : The Lancet Infectious Diseases. 17, 2, p. 118-119 2 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Pinholt, M., Gumpert, H., Bayliss, S., Nielsen, J. B., Vorobieva, V., Pedersen, M., Feil, E., Worning, P. & Westh, H., 1 Jan 2017, In : Journal of Antimicrobial Chemotherapy. 72, 1, p. 40-47 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns

Donker, T., Reuter, S., Sciberras, J., Reynolds, R., Brown, N., Torok, M. E., James, R., East of England Microbiology Research Network, Aanensen, D. M., Bentley, S. D., Holden, M. T. G., Parkhill, J., Spratt, B. G., Peacock, S. J., Feil, E. J. & Grundmann, H., 4 Jul 2017, In : Microbial Genomics. 3

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

The Evolution and Dynamics of Methicillin-Resistant Staphylococcus aureus

Abdelbary, M. M. H., Basset, P., Blanc, D. S. & Feil, E. J., 8 Feb 2017, Genetics and Evolution of Infectious Diseases (2nd Ed.). Tibayrenc, M. (ed.). Elsevier, p. 553-572 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

The promise of whole genome pathogen sequencing for the molecular epidemiology of emerging aquaculture pathogens

Bayliss, S. C., Verner-Jeffries, D. W., Bartie, K. L., Aanensen, D. M., Sheppard, S. K., Adams, A. & Feil, E. J., 3 Feb 2017, In : Frontiers in Microbiology. 8, 237708 .

Research output: Contribution to journalReview article

Open Access
17 Citations (Scopus)

The use of Oxford Nanopore native barcoding for complete genome assembly

Bayliss, S. C., Hunt, V. L., Yokoyama, M., Thorpe, H. A. & Feil, E. J., 1 Mar 2017, In : GigaScience. 6, 3, p. 1-6 gix001.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)