Research output per year
Research output per year
Research output
- 19 Article
- 19 results
Search results
-
2023
Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study
Calland, J. K., Haukka, K., Kpordze, S. W., Brusah, A., Corbella, M., Merla, C., Samuelsen, Ø., Feil, E. J., Sassera, D., Karikari, A. B., Saba, C. K. S., Thorpe, H. A. & Corander, J., 30 Nov 2023, In: The Lancet Microbe. 4, 11, p. e943-e952 10 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (SciVal) -
2022
A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings
Feil, E., Booton, R., Kallonen, T., Gibbon, M., Monge Gomes Do Couto, N., Passet, V., Fernandez, S., Rodrigues, C., Matthews, L., Mitchell, S., Reeve, R., David, S., Merla, C., Corbella, M., Ferrari, C., Comandatore, F., Manone, P., Brisse, S., Sassera, D. & Corander, J., 31 Dec 2022, In: Nature Microbiology. 7, p. 2054-2067Research output: Contribution to journal › Article › peer-review
Open Access36 Citations (SciVal) -
Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment
Chewapreecha, C., Pensar, J., Chattagul, S., Pesonen, M., Sangphukieo, A., Boonklang, P., Potisap, C., Koosakulnirand, S., Feil, E. J., Dunachie, S., Chantratita, N., Limmathurotsakul, D., Peacock, S. J., Day, N. P. J., Parkhill, J., Thomson, N. R., Sermswan, R. W. & Corander, J., 1 Jan 2022, In: Molecular Biology and Evolution. 39, 1, 13 p., msab306.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (SciVal) -
Stem Region of tRNA Genes Favors Transition Substitution Towards Keto Bases in Bacteria
Sen, P., Aziz, R., Deka, R. C., Feil, E. J., Ray, S. K. & Satapathy, S. S., 28 Feb 2022, In: Journal of Molecular Evolution. 90, 1, p. 114-123 10 p.Research output: Contribution to journal › Article › peer-review
5 Citations (SciVal) -
2021
A high prevalence of blaOXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England
Gibbon, M. J., Couto, N., David, S., Barden, R., Standerwick, R., Jagadeesan, K., Birkwood, H., Dulyayangkul, P., Avison, M. B., Kannan, A., Kibbey, D., Craft, T., Habib, S., Thorpe, H. A., Corander, J., Kasprzyk-Hordern, B. & Feil, E. J., 31 Dec 2021, In: Microbial Genomics. 7, 3Research output: Contribution to journal › Article › peer-review
Open AccessFile13 Citations (SciVal)138 Downloads (Pure) -
Closed genome sequences of staphylococcus lloydii sp. Nov. and staphylococcus durrellii sp. nov. isolated from captive fruit bats (Pteropus livingstonii)
Fountain, K., Gibbon, M. J., Loeffler, A. & Feil, E. J., 31 Dec 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 3, 004715.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (SciVal) -
Fatal exudative dermatitis in island populations of red squirrels (Sciurus vulgaris): spillover of a virulent Staphylococcus aureus clone (ST49) from reservoir hosts
Fountain, K., Blackett, T., Butler, H., Carchedi, C., Schilling, A. K., Meredith, A., Gibbon, M. J., Lloyd, D. H., Loeffler, A. & Feil, E. J., 31 May 2021, In: Microbial Genomics. 7, 5, 000565.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (SciVal) -
Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Mageiros, L., Meric, G., Bayliss, S., Pensar, J., Pascoe, B., Mourkas, E., Calland, J., Yahara, K., Murray, S., Wilkinson, T. S., Williams, L. K., Hitchings, M. D., Porter, J., Kemmett, K., Feil, E., Jolley, K. A., Williams, N. J., Corander, J. & Sheppard, S., 3 Feb 2021, In: Nature Communications. 12, 765.Research output: Contribution to journal › Article › peer-review
Open Access69 Citations (SciVal)26 Downloads (Pure) -
Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae
Biffignandi, G. B., Gibbon, M. J., Corbella, M., Thorpe, H. A., Merla, C., Castelli, M., Kallonen, T., Pegrum, K., Brisse, S., Corander, J., Marone, P., Feil, E. J. & Sassera, D., 28 Feb 2021, In: G3: Genes, Genomes, Genetics. 11, 2, jkab019.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (SciVal) -
High-resolution sweep metagenomics using fast probabilistic inference [version 2; peer review: 2 approved]
Mäklin, T., Kallonen, T., David, S., Boinett, C. J., Pascoe, B., Méric, G., Aanensen, D. M., Feil, E. J., Baker, S., Parkhill, J., Sheppard, S. K., Corander, J. & Honkela, A., 8 Oct 2021, In: Wellcome Open Research. 5, 20 p., 14.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (SciVal) -
One Health drivers of antibacterial resistance: Quantifying the relative impacts of human, animal and environmental use and transmission
OH-DART Study Group, 30 Jun 2021, In: One Health. 12, 100220.Research output: Contribution to journal › Article › peer-review
Open Access65 Citations (SciVal) -
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages
Calland, J. K., Pascoe, B., Bayliss, S. C., Mourkas, E., Berthenet, E., Thorpe, H. A., Hitchings, M. D., Feil, E. J., Corander, J., Blaser, M. J., Falush, D. & Sheppard, S. K., 28 Sept 2021, In: Plos Genetics. 17, 9, e1009829.Research output: Contribution to journal › Article › peer-review
Open Access12 Citations (SciVal) -
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch
Argimón, S., David, S., Underwood, A., Abrudan, M., Wheeler, N. E., Kekre, M., Abudahab, K., Yeats, C. A., Goater, R., Taylor, B., Harste, H., Muddyman, D., Feil, E. J., Brisse, S., Holt, K., Donado-Godoy, P., Ravikumar, K. L., Okeke, I. N., Carlos, C. & Aanensen, D. M. & 24 others, , 1 Dec 2021, In: Clinical Infectious Diseases. 73, Supplement 4, p. S325-S335 11 p.Research output: Contribution to journal › Article › peer-review
Open Access55 Citations (SciVal) -
2020
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae
David, S., Cohen, V., Reuter, S., Sheppard, A. E., Giani, T., Parkhill, J., Rossolini, G. M., Feil, E. J., Grundmann, H. & Aanensen, D. M., 6 Oct 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 40, p. 25043-25054 12 p.Research output: Contribution to journal › Article › peer-review
Open Access89 Citations (SciVal) -
Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant Staphylococcus aureus ST228
Abdelbary, M. M. H., Feil, E. J., Senn, L., Petignat, C., Prod’hom, G., Schrenzel, J., François, P., Werner, G., Layer, F., Strommenger, B., Pantosti, A., Monaco, M., Denis, O., Deplano, A., Grundmann, H. & Blanc, D. S., 26 Aug 2020, In: Frontiers in Microbiology. 11, 2063.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (SciVal) -
2019
Description of klebsiella spallanzanii sp. Nov. and of klebsiella pasteurii sp. nov.
Merla, C., Rodrigues, C., Passet, V., Corbella, M., Thorpe, H. A., Kallonen, T. V. S., Zong, Z., Marone, P., Bandi, C., Sassera, D., Corander, J., Feil, E. J. & Brisse, S., 25 Oct 2019, In: Frontiers in Microbiology. 10, p. 1-9 9 p., 2360.Research output: Contribution to journal › Article › peer-review
Open Access37 Citations (SciVal) -
Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae
Comandatore, F., Sassera, D., Bayliss, S. C., Scaltriti, E., Gaiarsa, S., Cao, X., Gales, A. C., Saito, R., Pongolini, S., Brisse, S., Feil, E. J. & Bandi, C., 30 Nov 2019, In: Genome biology and evolution. 11, 11, p. 3240-3251 12 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (SciVal) -
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
Bayliss, S. C., Thorpe, H. A., Coyle, N. M., Sheppard, S. K. & Feil, E. J., 1 Oct 2019, In: GigaScience. 8, 10, p. 1-9 9 p., giz119.Research output: Contribution to journal › Article › peer-review
Open Access123 Citations (SciVal) -
2017
The use of Oxford Nanopore native barcoding for complete genome assembly
Bayliss, S. C., Hunt, V. L., Yokoyama, M., Thorpe, H. A. & Feil, E. J., 1 Mar 2017, In: GigaScience. 6, 3, p. 1-6 gix001.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (SciVal)