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Research Output 1988 2018

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Article
2018
2 Citations (Scopus)

Distinctive phosphoinositide- A and Ca2+ binding properties of normal and cognitive performance-linked variant forms of KIBRA C2 domain

Posner, M. G., Upadhyay, A., Ishima, R., Kalli, A. C., Harris, G., Kremerskothen, J., Sansom, M. S. P., Crennell, S. J. & Bagby, S., 15 Jun 2018, In : The Journal of biological chemistry. 293, 24, p. 9335-9344

Research output: Contribution to journalArticle

Open Access
Phosphatidylinositols
Membranes
Nuclear magnetic resonance
Calcium
Titration

Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing

Ring, N., Abrahams, J. S., Jain, M., Olsen, H., Preston, A. & Bagby, S., 28 Nov 2018, In : Microbial Genomics. 4, 11, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
2016
8 Citations (Scopus)

A Modular Bio-Platform Based on a Versatile Supramolecular Multi-Enzyme Complex Directly Attached to Graphene

Alshammari, A., Posner, M. G., Upadhyay, A., Marken, F., Bagby, S. & Ilie, A., 17 Aug 2016, In : ACS Applied Materials and Interfaces. 8, 32, p. 21077–21088 12 p.

Research output: Contribution to journalArticle

Open Access
File
Graphite
Graphene
Enzymes
Proteins
Acyltransferases
6 Citations (Scopus)

Extracellular Fibrinogen-binding Protein (Efb) from Staphylococcus aureus Inhibits the Formation of Platelet-Leukocyte Complexes

Posner, M. G., Upadhyay, A., Alsheikh Abubaker, A., Fortunato, T. M., Vara, D., Canobbio, I., Bagby, S. & Pula, G., 5 Feb 2016, In : Journal of Biological Chemistry. 291, 6, p. 2764-2776 22 p.

Research output: Contribution to journalArticle

Open Access
Platelets
Fibrinogen
Staphylococcus aureus
Carrier Proteins
Leukocytes
2015
97 Citations (Scopus)

YAP is essential for tissue tension to ensure vertebrate 3D body shape

Porazinski, S., Wang, H., Asaoka, Y., Behrndt, M., Miyamoto, T., Morita, H., Hata, S., Sasaki, T., Krens, S. F. G., Osada, Y., Asaka, S., Momoi, A., Linton, S., Miesfeld, J. B., Link, B. A., Senga, T., Castillo-Morales, A., Urrutia, A. O., Shimizu, N., Nagase, H. & 6 othersMatsuura, S., Bagby, S., Kondoh, H., Nishina, H., Heisenberg, C. P. & Furutani-Seiki, M., 14 May 2015, In : Nature. 521, 7551, p. 217-221 5 p.

Research output: Contribution to journalArticle

Open Access
File
Vertebrates
Gravitation
Oryzias
Embryonic Structures
Actomyosin
2014
2 Citations (Scopus)

Comparative genomic analysis reveals 2-oxoacid dehydrogenase complex lipoylation correlation with aerobiosis in archaea

Borziak, K., Posner, M., Upadhyay, A., Danson, M., Bagby, S. & Dorus, S., 28 Jan 2014, In : PLoS ONE. 9, p. 1 - 9 9 p., e87063.

Research output: Contribution to journalArticle

Open Access
File
Aerobiosis
Lipoylation
Keto Acids
aerobiosis
Archaea
10 Citations (Scopus)

Transient expression in HEK 293 cells: An alternative to E. coli for the production of secreted and intracellular mammalian proteins

Nettleship, J. E., Watson, P. J., Rahman-Huq, N., Fairall, L., Posner, M. G., Upadhyay, A., Reddivari, Y., Chamberlain, J. M. G., Kolstoe, S. E., Bagby, S., Schwabe, J. W. R. & Owens, R. J., 16 Nov 2014, In : Methods in Molecular Biology. 1258, p. 209-222 14 p.

Research output: Contribution to journalArticle

Open Access
File
HEK293 Cells
Escherichia coli
Recombinant Proteins
Transfection
Proteins
2013
7 Citations (Scopus)

Post-translational modification in the archaea: structural characterization of multi-enzyme complex lipoylation

Posner, M. G., Upadhyay, A., Crennell, S., Watson, A. J. A., Dorus, S., Danson, M. J. & Bagby, S., 15 Jan 2013, In : Biochemical Journal. 449, 2, p. 415-425 11 p.

Research output: Contribution to journalArticle

Open Access
File
Lipoylation
Archaea
Post Translational Protein Processing
Enzymes
Protein C
2012
5 Citations (Scopus)

The Hippo pathwaya: Key interaction and catalytic domains in organ growth control, stem cell self-renewal and tissue regeneration

Cherrett, C., Furutani-Seiki, M. & Bagby, S., 2012, In : Essays in Biochemistry. 53, 1, p. 111-127 17 p.

Research output: Contribution to journalArticle

Open Access
File
Tissue regeneration
Stem cells
Regeneration
Catalytic Domain
Growth
2011
10 Citations (Scopus)
Complement 3d Receptors
Complement Inactivating Agents
X-Rays
Ligands
Complement C3
39 Citations (Scopus)

Structural features and ligand binding properties of tandem WW domains from YAP and TAZ, nuclear effectors of the Hippo pathway

Webb, C., Upadhyay, A., Giuntini, F., Eggleston, I., Furutani-Seiki, M., Ishima, R. & Bagby, S., 26 Apr 2011, In : Biochemistry. 50, 16, p. 3300-3309 10 p.

Research output: Contribution to journalArticle

Protein Isoforms
Ligands
Peptides
Protein Interaction Domains and Motifs
Proteins
2010
30 Citations (Scopus)
Complement 3d Receptors
Immune Evasion
Staphylococcus aureus
Mutagenesis
Mutation
4 Citations (Scopus)

Photorhabdus adhesion modification protein (Pam) binds extracellular polysaccharide and alters bacterial attachment

Jones, R. T., Sanchez-Contreras, M., Vlisidou, I., Amos, M. R., Yang, G., Munoz-Berbel, X., Upadhyay, A., Potter, U. J., Joyce, S. A., Ciche, T. A., Jenkins, A. T. A., Bagby, S., ffrench-Constant, R. H. & Waterfield, N. R., 12 May 2010, In : BMC Microbiology. 10, 141.

Research output: Contribution to journalArticle

File
Photorhabdus
Bacterial Polysaccharides
Proteins
Insects
Temperature
2009
14 Citations (Scopus)

A unique lipoylation system in the Archaea: lipoylation in Thermoplasma acidophilum requires two proteins

Posner, M. G., Upadhyay, A., Bagby, S., Hough, D. W. & Danson, M. J., Aug 2009, In : FEBS Journal. 276, 15, p. 4012-4022 11 p.

Research output: Contribution to journalArticle

Thermoplasma
Lipoylation
Archaea
Multienzyme Complexes
Keto Acids

IsaB, a new immunoglobulin-binding protein from Staphylococcus aureus

Clark, E., Upadhyay, A., Bagby, S. & van den Elsen, J., 2009, In : Molecular Immunology. 46, 14, p. 2834-2835 2 p.

Research output: Contribution to journalArticle

2008
83 Citations (Scopus)

Interaction of human complement with Sbi, a staphylococcal immunoglobulin-binding protein: indications of a novel mechanism of complement evasion by Staphylococcus aureus

Burman, J. D., Leung, E., Atkins, K. L., O'Seaghdha, M. N., Lango, L., Bernado, P., Bagby, S., Svergun, D. I., Foster, T. J., Isenman, D. E. & van den Elsen, J. M. H., 20 Jun 2008, In : Journal of Biological Chemistry. 283, 25, p. 17579-17593 15 p.

Research output: Contribution to journalArticle

72 Citations (Scopus)

S. aureus IgG-binding proteins SpA and Sbi: host specificity and mechanisms of immune complex formation

Atkins, K. L., Burman, J. D., Chamberlain, E. S., Cooper, J. E., Poutrel, B., Bagby, S., Jenkins, T. A., Feil, E. J. & van den Elsen, J. M. H., Mar 2008, In : Molecular Immunology. 45, 6, p. 1600-1611 12 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Structure-function analysis of the C3 binding region of Staphylococcus aureus immune subversion protein Sbi

Upadhyay, A., Burman, J. D., Clark, E. A., Leung, E., Isenman, D. E., van den Elsen, J. M. H. & Bagby, S., 8 Aug 2008, In : Journal of Biological Chemistry. 283, 32, p. 22113-22120 8 p.

Research output: Contribution to journalArticle

Alternative Complement Pathway
Complement Inactivating Agents
Staphylococcus aureus
Animals
Immune Evasion

Structure–function analysis of the novel Staphylococcus aureus immune subversion protein Sbi

van den Elsen, J., Upadhyay, A., Burman, J., Leung, E., Clark, E., Isenman, D. & Bagby, S., 2008, In : Molecular Immunology. 45, 16, p. 4119 1 p., P71.

Research output: Contribution to journalArticle

20 Citations (Scopus)
2007
30 Citations (Scopus)

Characterisation of receptor binding by the chemotaxis inhibitory protein of Staphylococcus aureus and the effects of the host immune response

Wright, A. J., Higginbottom, A., Philippe, D., Upadhyay, A., Bagby, S., Read, R. C., Monk, P. N. & Partridge, L. J., 2007, In : Molecular Immunology. 44, 10, p. 2507-2517

Research output: Contribution to journalArticle

2005
23 Citations (Scopus)

Evolution of the genetic triplet code via two types of doublet codons

Wu, H-L., Bagby, S. & van den Elsen, J., 2005, In : Journal of Molecular Evolution. 61, 1, p. 54-64

Research output: Contribution to journalArticle

Genetic Code
genetic code
codons
Codon
amino acid
2004
1 Citation (Scopus)

Assignment of the 1H, 13C and 15N resonances of the catalytic domain of guanine nucleotide exchange factor BopE from Burkholderia pseudomallei

Wu, H-L., Williams, C., Upadhyay, A., Galyov, E. E. & Bagby, S., 1 Jun 2004, In : Journal of Biomolecular NMR. 29, 2, p. 215-216

Research output: Contribution to journalArticle

6 Citations (Scopus)

Biophysical characterization of the catalytic domain of guanine nucleotide exchange factor BopE from Burkholderia pseudomallei

Upadhyay, A., Williams, C., Gill, A. C., Philippe, D. L., Davis, K., Taylor, L. A., Stevens, M. P., Galyov, E. E. & Bagby, S., 2004, In : Biochimica Et Biophysica Acta-Proteins and Proteomics. 1698, 1, p. 111-119

Research output: Contribution to journalArticle

14 Citations (Scopus)

Solution structure, backbone dynamics, and interaction with Cdc42 of Salmonella guanine nucleotide exchange factor SopE2

Williams, C., Galyov, E. E. & Bagby, S., 2004, In : Biochemistry. 43, 38, p. 11998-12008

Research output: Contribution to journalArticle

5 Citations (Scopus)

Structural analysis of Salmonella enterica effector protein SopD

Wood, M. W., Williams, C., Upadhyay, A., Gill, A. C., Philippe, D. L., Galyov, E. E., van den Elsen, J. M. H. & Bagby, S., 2004, In : Biochimica Et Biophysica Acta-Proteins and Proteomics. 1698, 2, p. 219-226

Research output: Contribution to journalArticle

2003
1 Citation (Scopus)

Assignment of the 1H, 13C and 15N resonances of the catalytic domain of guanine nucleotide exchange factor SopE2 from Salmonella dublin

Williams, C., Galyov, E. E. & Bagby, S., 1 Jan 2003, In : Journal of Biomolecular NMR. 26, 4, p. 379-380

Research output: Contribution to journalArticle

2002
1 Citation (Scopus)

Protein structure calculation from NMR data

Mal, T. K., Bagby, S. & Ikura, M., 2002, In : Methods in Molecular Biology. 173, p. 267-283

Research output: Contribution to journalArticle

2001
2 Citations (Scopus)

Alternate routes to conformational specificity in a Greek key β barrel protein

Qi, X-F., Bagby, S., Gombos, Z., Ikura, M. & Chakrabartty, A., 1 Sep 2001, In : European Journal of Biochemistry. 268, 17, p. 4653-4664

Research output: Contribution to journalArticle

45 Citations (Scopus)

Optimization of protein solubility and stability for protein nuclear magnetic resonance

Bagby, S., Tong, K. I. & Ikura, M., 2001, In : Methods in Enzymology. 339B, p. 20-41

Research output: Contribution to journalArticle

2000
30 Citations (Scopus)

TFIIA–TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP

Bagby, S., Mal, T. K., Liu, D., Raddatz, E., Nakatani, Y. & Ikura, M., 1 Feb 2000, In : FEBS Letters. 468, 2-3, p. 149-154

Research output: Contribution to journalArticle

1998
20 Citations (Scopus)

Equilibrium folding intermediates of a greek key β-barrel protein

Bagby, S., Go, S., Inouye, S., Ikura, M. & Chakrabartty, A., 1 Feb 1998, In : Journal of Molecular Biology. 276, 3, p. 669-681

Research output: Contribution to journalArticle

39 Citations (Scopus)

Human general transcription factor TFIIB : conformational variability and interaction with VP16 activation domain

Hayashi, F., Ishima, R., Liu, D., Tong, K. I., Kim, S., Reinberg, D., Bagby, S. & Ikura, M., 1 Jun 1998, In : Biochemistry. 37, 22, p. 7941-7951

Research output: Contribution to journalArticle

7 Citations (Scopus)

New perceptions of transcription factor properties from NMR

Bagby, S., Arrowsmith, C. H. & Ikura, M., 1 May 1998, In : Biochemistry and Cell Biology - Biochimie Et Biologie Cellulaire. 76, 2-3, p. 368-378

Research output: Contribution to journalArticle

161 Citations (Scopus)

Solution structure of a TBP–TAFII230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP

Liu, D., Ishima, R., Tong, K. I., Bagby, S., Kokubo, T., Muhandiram, D. R., Kay, L. E., Nakatani, Y. & Ikura, M., 1 Sep 1998, In : Cell. 94, 5, p. 573-583

Research output: Contribution to journalArticle

1997
35 Citations (Scopus)

The button test: a small scale method using microdialysis cells for assessing protein solubility at concentrations suitable for NMR

Bagby, S., Tong, K. L., Liu, D., Alattia, J-R. & Ikura, M., 1 Jan 1997, In : Journal of Biomolecular NMR. 10, 3, p. 279-282

Research output: Contribution to journalArticle

1996
30 Citations (Scopus)

The histone folds in transcription factor TFIID

Nakatani, Y., Bagby, S. & Ikura, M., 22 Mar 1996, In : Journal of Biological Chemistry. 271, 12, p. 6575-6578

Research output: Contribution to journalArticle

1995

Solution structure of the c-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein

Bagby, S., Kim, S., Maldonado, E., Tong, K. L., Reinberg, D. & Ikura, M., Sep 1995, In : Cell. 82, 5, p. 857-867

Research output: Contribution to journalArticle

Solution structure of the epithelial cadherin domain responsible for selective cell adhesion

Overduin, M., Harvey, T. S., Bagby, S., I. Tong, K., Yau, P., Takeichi, M. & Ikura, M., 1995, In : Science. 267, 5196

Research output: Contribution to journalArticle

1994

High-resolution solution structure of reduced parsley plastocyanin

Bagby, S., Driscoll, P. C., Harvey, T. S. & Hill, H. A. O., 1 May 1994, In : Biochemistry. 33, 21, p. 6611-6622

Research output: Contribution to journalArticle

NMR-derived three-dimensional solution structure of protein S complexed with calcium

Bagby, S., Harvey, T. S., Eagle, S. G., Inouye, S. & Ikura, M., 1 Feb 1994, In : Structure. 2, 2, p. 107-122

Research output: Contribution to journalArticle

Purification and spectroscopic characterization of a recombinant amino-terminal polypeptide fragment of mouse epithelial cadherin

I. Tong, K., Yau, P., Overduin, M., Bagby, S., Porumb, T., Takeichi, M. & Ikura, M., 1 Oct 1994, In : FEBS Letters. 352, 3, p. 318-322

Research output: Contribution to journalArticle

1991

Direct electrochemistry of two genetically distinct flavodoxins isolated from Azotobacter chroococcum grown under nitrogen-fixing conditions

Bagby, S., Barker, P. D., Hill, H. A., Sanghera, G. S., Dunbar, B., Ashby, G. A., Eady, R. R. (ed.) & Thorneley, R. N., 1991, In : Biochemical Journal. 277, Pt 2, p. 313-326

Research output: Contribution to journalArticle

Subunit interactions change the heme active-site geometry in p-cresol methylhydroxylase

McLendon, G. L., Bagby, S., Charman, J. A., Driscoll, P. C., McIntire, W. S., Mathews, F. S. & Hill, H. A. O., 1991, In : Proceedings of the National Academy of Sciences of the United States of America (PNAS). 88, 21, p. 9463-9467

Research output: Contribution to journalArticle

1990

Direct electrochemistry of protein-protein complexes involving cytochrome c, cytochrome b5, and plastocyanin

Bagby, S., Barker, P. D., Guo, L. H. & Hill, H. A. O., 1 Apr 1990, In : Biochemistry. 29, 13, p. 3213-3219

Research output: Contribution to journalArticle

The complex formed between plastocyanin and cytochrome c. Investigation by NMR spectroscopy

Bagby, S., Driscoll, P. C., Goodall, K. G., Redfield, C. & Hill, H. A. O., 1 Mar 1990, In : European Journal of Biochemistry. 188, 2, p. 413-420

Research output: Contribution to journalArticle

1988

The direct electrochemistry of cytochrome b5 at peptide-modified gold electrodes

Bagby, S., Barker, P. D., Di Gleria, K., Hill, H. A. O. & Lowe, V. J., 1988, In : Biochemical Society Transactions. 16, p. 958-959

Research output: Contribution to journalArticle