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Research Output 2008 2019

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Article
2019

Adapting for life in the extreme

Kobras, C. M. & Falush, D., 15 Jul 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Recent mixing of Vibrio parahaemolyticus populations

Yang, C., Pei, X., Wu, Y., Yan, L., Yan, Y., Song, Y., Coyle, N. M., Martinez-Urtaza, J., Quince, C., Hu, Q., Jiang, M., Feil, E., Yang, D., Song, Y., Zhou, D., Yang, R., Falush, D. & Cui, Y., 24 Jun 2019, In : ISME Journal.

Research output: Contribution to journalArticle

2018
2 Citations (Scopus)

A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Berthenet, E., Yahara, K., Thorell, K., Pascoe, B., Meric, G., Mikhail, J. M., Engstrand, L., Enroth, H., Burette, A., Megraud, F., Varon, C., Atherton, J. C., Smith, S., Wilkinson, T. S., Hitchings, M. D., Falush, D. & Sheppard, S. K., 2 Aug 2018, In : BMC Biology. 16, 11 p., 84.

Research output: Contribution to journalArticle

Open Access
stomach neoplasms
Helicobacter pylori
Genome-Wide Association Study
Stomach Neoplasms
cancer
21 Citations (Scopus)

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

Lawson, D. J., van Dorp, L. & Falush, D., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 3258.

Research output: Contribution to journalArticle

Open Access
plots
History
histories
Genetic Drift
Clustering algorithms
20 Citations (Scopus)

RADpainter and fineRADstructure: Population Inference from RADseq Data

Malinsky, M., Trucchi, E., Lawson, D. J. & Falush, D., 1 May 2018, In : Molecular Biology and Evolution. 35, 5, p. 1284-1290 7 p.

Research output: Contribution to journalArticle

Open Access
DNA Sequence Analysis
Haplotypes
haplotypes
sequence analysis
DNA
2017
17 Citations (Scopus)

Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas

Thorell, K., Yahara, K., Berthenet, E., Lawson, D. J., Mikhail, J., Kato, I., Mendez, A., Rizzato, C., Bravo, M. M., Suzuki, R., Yamaoka, Y., Torres, J., Sheppard, S. K. & Falush, D., 23 Feb 2017, In : Plos Genetics. 13, 2, p. 1-21 21 p., e1006546.

Research output: Contribution to journalArticle

Open Access
Helicobacter pylori
subpopulation
bacterium
commensal
ancestry
2016
15 Citations (Scopus)

The landscape of realized homologous recombination in pathogenic bBacteria

Yahara, K., Didelot, X., Jolley, K. A., Kobayashi, I., Maiden, M. C. J., Sheppard, S. & Falush, D., 1 Feb 2016, In : Molecular Biology and Evolution. 33, 2, p. 456-471 16 p.

Research output: Contribution to journalArticle

Open Access
Homologous Recombination
homologous recombination
Genetic Recombination
recombination
gene
2014
31 Citations (Scopus)

Efficient inference of recombination hot regions in bacterial genomes

Yahara, K., Didelot, X., Ansari, M. A., Sheppard, S. K. & Falush, D., 1 Jun 2014, In : Molecular Biology and Evolution. 31, 6, p. 1593-1605 13 p.

Research output: Contribution to journalArticle

Open Access
2013
109 Citations (Scopus)

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

Sheppard, S. K., Didelot, X., Meric, G., Torralbo, A., Jolley, K. A., Kelly, D. J., Bentley, S. D., Maiden, M. C. J., Parkhill, J. & Falush, D., 16 Jul 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 29, p. 11923-11927 5 p.

Research output: Contribution to journalArticle

Pantothenic Acid
Campylobacter
Genome-Wide Association Study
Host Specificity
Chickens
46 Citations (Scopus)

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli

Méric, G., Kemsley, E. K., Falush, D., Saggers, E. J. & Lucchini, S., Feb 2013, In : Environmental Microbiology. 15, 2, p. 487-501 15 p.

Research output: Contribution to journalArticle

colonization
Escherichia coli
phylogenetics
phenotype
phylogeny
65 Citations (Scopus)

Progressive genome-wide introgression in agricultural Campylobacter coli

Sheppard, S. K., Didelot, X., Jolley, K. A., Darling, A. E., Pascoe, B., Meric, G., Kelly, D. J., Cody, A., Colles, F. M., Strachan, N. J. C., Ogden, I. D., Forbes, K., French, N. P., Carter, P., Miller, W. G., McCarthy, N. D., Owen, R., Litrup, E., Egholm, M., Affourtit, J. P. & 4 others, Bentley, S. D., Parkhill, J., Maiden, M. C. J. & Falush, D., Feb 2013, In : Molecular Ecology. 22, 4, p. 1051-1064 14 p.

Research output: Contribution to journalArticle

Open Access
Campylobacter coli
introgression
genome
Genome
DNA
2009
218 Citations (Scopus)

Campylobacter genotyping to determine the source of human infection

Sheppard, S. K., Dallas, J. F., Strachan, N. J. C., MacRae, M., McCarthy, N. D., Wilson, D. J., Gormley, F. J., Falush, D., Ogden, L. D., Maiden, M. C. J. & Forbes, K. J., 15 Apr 2009, In : Clinical Infectious Diseases. 48, 8, p. 1072-1078 7 p.

Research output: Contribution to journalArticle

2008
147 Citations (Scopus)

Convergence of Campylobacter species: Implications for bacterial evolution

Sheppard, S. K., McCarthy, N. D., Falush, D. & Maiden, M. C. J., 11 Apr 2008, In : Science. 320, 5873, p. 237-239 3 p.

Research output: Contribution to journalArticle