Research Output 1992 2019

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2019
4 Citations (Scopus)

Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field

Jouet, A., Saunders, D. G. O., McMullan, M., Ward, B., Furzer, O., Jupe, F., Cevik, V., Hein, I., Thilliez, G. J. A., Holub, E., van Oosterhout, C. & Jones, J. D. G., 1 Feb 2019, In : New Phytologist. 221, 3, p. 1529-1543 15 p.

Research output: Contribution to journalArticle

Open Access
Albugo candida
Plant Diseases
Ploidies
ploidy
Candida

A new species of Coloborhynchus (Pterosauria, Ornithocheiridae) from the mid-Cretaceous of North Africa

Jacobs, M. L., Martill, D. M., Ibrahim, N. & Longrich, N., 1 Mar 2019, In : Cretaceous Research. 95, p. 77-88

Research output: Contribution to journalArticle

Biogeography of the fish pathogen Aeromonas salmonicida inferred by vapA genotyping

Gulla, S., Bayliss, S., Björnsdóttir, B., Dalsgaard, I., Haenen, O., Jansson, E., McCarthy, U., Scholz, F., Vercauteren, M., Verner-Jeffreys, D., Welch, T., Wiklund, T. & Colquhoun, D. J., 12 Apr 2019, In : FEMS Microbiology Letters. 366, 7, fnz074.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Conserved transcriptomic profiles underpin monogamy across vertebrates

Young, R. L., Ferkin, M. H., Ockendon-Powell, N. F., Orr, V. N., Phelps, S. M., Pogány, Á., Richards-Zawacki, C. L., Summers, K., Székely, T., Trainor, B. C., Urrutia, A. O., Zachar, G., O’Connell, L. A. & Hofmann, H. A., 22 Jan 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 4, p. 1331-1336 6 p.

Research output: Contribution to journalArticle

Controlled human infection with Bordetella pertussis induces asymptomatic, immunising colonisation

Preston, A., de Graaf, H., Ibrahim, M., Hill, A., Gbesemete, D., Vaughn, A., Gorringe, A., Buisman, A-M., Faust, S., Kester, K., Berbers, G., Diavotopoulos, D. & Read, R., 22 Jul 2019, (Accepted/In press) In : Clinical Infectious Diseases. 45 p.

Research output: Contribution to journalArticle

Core genome sequence analysis to characterize Salmonella enterica serovar Rissen ST469 from a swine production chain

Prasertsee, T., Chuammitri, P., Deeudom, M., Chokesajjawatee, N., Santiyanont, P., Tadee, P., Nuangmek, A., Tadee, P., Sheppard, S. K., Pascoe, B. & Patchanee, P., 28 May 2019, In : International Journal of Food Microbiology. 304, p. 68-74 7 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Diverse NLR immune receptors activate defence via the RPW8-NLR NRG1

Castel, B., Ngou, P-M., Cevik, V., Redkar, A., Kim, D-S., Yang, Y., Ding, P. & Jones, J. D. G., 1 Apr 2019, In : New Phytologist. 222, 2, p. 966-980 5 p.

Research output: Contribution to journalArticle

Open Access

Domestication of Campylobacter jejuni NCTC 11168

Pascoe, B., Williams, L. K., Calland, J. K., Meric, G., Hitchings, M. D., Dyer, M., Ryder, J., Shaw, S., Lopes, B. S., Chintoan-Uta, C., Allan, E., Vidal, A., Fearnley, C., Everest, P., Pachebat, J. A., Cogan, T. A., Stevens, M. P., Humphrey, T. J., Wilkinson, T. S., Cody, A. J. & 12 othersColles, F. M., Jolley, K. A., Maiden, M. C. J., Strachan, N., Pearson, B. M., Linton, D., Wren, B. W., Parkhill, J., Kelly, D. J., van Vliet, A. H. M., Forbes, K. J. & Sheppard, S. K., 16 Jul 2019, In : Microbial Genomics.

Research output: Contribution to journalArticle

Open Access

Evolutionary Quantitative Genetics of Genomic Imprinting

O'Brien, E. K. & Wolf, J. B., 1 Jan 2019, In : Genetics. 211, 1, p. 75-88 14 p.

Research output: Contribution to journalArticle

Functional characterization of BcrR: a one-component transmembrane signal transduction system for bacitracin resistance

Darnell, R., Nakatani, Y., Knottenbelt, M., Gebhard, S. & Cook, G. M., 1 Apr 2019, In : Microbiology. 165, 4, p. 475-487 13 p.

Research output: Contribution to journalArticle

Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease

Mourkas, E., Florez-Cuadrado, D., Pascoe, B., Calland, J. K., Bayliss, S. C., Mageiros, L., Méric, G., Hitchings, M. D., Quesada, A., Porrero, C., Ugarte-Ruiz, M., Gutiérrez-Fernández, J., Domínguez, L. & Sheppard, S. K., 5 Aug 2019, In : Environmental Microbiology.

Research output: Contribution to journalArticle

High tech research reveals preferential feeding in honey bees

Greco, M. K., Coates, B. & Feil, E. J., 31 Mar 2019, In : Journal of Apicultural Research. 58, 3, p. 471-477 7 p.

Research output: Contribution to journalArticle

Parental care and the evolution of terrestriality in frogs

Vági, B., Végvári, Z., Liker, A., Freckleton, R. P. & Székely, T., 30 Apr 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1900, p. 1-10 10 p., 20182737.

Research output: Contribution to journalArticle

Open Access
File

Phylogenetic incongruence and homoplasy in the appendages and bodies of arthropods: Why broad character sampling is best

Brinkworth, A., Wills, M. & Sansom, R., 17 Feb 2019, (Accepted/In press) Zoological Journal of the Linnean Society.

Research output: Contribution to specialist publicationArticle

Phylogeography of the Rufous vanga and the role of bioclimatic transition zones in promoting speciation within Madagascar

Younger, J., Dempster, P., Nyári, Á. S., Helms, T., Raherilalao, M. J., Goodman, S. M. & Reddy, S., 14 Jun 2019, In : Molecular Phylogenetics and Evolution. 139, 106535.

Research output: Contribution to journalArticle

Prevalence of faecal carriage of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli in veterinary hospital staff and students

Royden, A., Ormandy, E., Pinchbeck, G., Pascoe, B., Hitchings, M. D., Sheppard, S. K. & Williams, N. J., 1 Jan 2019, In : Veterinary Record Open. 6, 1, e000307.

Research output: Contribution to journalArticle

Open Access

Recent mixing of Vibrio parahaemolyticus populations

Yang, C., Pei, X., Wu, Y., Yan, L., Yan, Y., Song, Y., Coyle, N. M., Martinez-Urtaza, J., Quince, C., Hu, Q., Jiang, M., Feil, E., Yang, D., Song, Y., Zhou, D., Yang, R., Falush, D. & Cui, Y., 24 Jun 2019, In : ISME Journal.

Research output: Contribution to journalArticle

Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima

Gore-Lloyd, D., Sumann, I., Brachmann, A., Schneeberger, K., Ortiz-Merino, R., Moreno, M., Schlafli, M., Kirner, P., Kron, A., Rueda-Mejia, M., Somerville, V., Wolfe, K., Piel, J., Ahrens, C., Henk, D. & Freimoser, F., 1 Jul 2019, In : Molecular Microbiology. 112, 1, p. 317-332 16 p.

Research output: Contribution to journalArticle

Open Access

The architecture of intra-organism mutation rate variation in plants

Hurst, L., 9 Apr 2019, In : PLoS Biology. 17, 4, p. e3000191 29 p., e3000191.

Research output: Contribution to journalArticle

Open Access

The evolution of Bordetella pertussis has selected for mutations of acr that lead to sensitivity to hydrophobic molecules and fatty acids.

MacArthur, I., Belcher, T., King, J., Ramasamy, V., Alhammadi, M. & Preston, A., 10 Apr 2019, In : Emerging Microbes and Infections. 8, 1, p. 603-612 10 p.

Research output: Contribution to journalArticle

Open Access
Open Access
File
3 Citations (Scopus)

Transgressive segregation reveals mechanisms of Arabidopsis immunity to Brassica-infecting races of white rust (Albugo candida)

Cevik, V., Boutrot, F., Apel, W., Robert-Seilaniantz, A., Furzer, O. J., Redkar, A., Castel, B., Kover, P. X., Prince, D. C., Holub, E. B. & Jones, J. D. G., 12 Feb 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 7, p. 2767-2773 7 p.

Research output: Contribution to journalArticle

Open Access

Using the wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens

Hernandez, R. J., Hesse, E., Dowling, A. J., Coyle, N. M., Feil, E. J., Gaze, W. H. & Vos, M., 4 Jan 2019, In : PeerJ. 6, 1, p. e6150 e6150.

Research output: Contribution to journalArticle

Open Access

WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome

Pinholt, M., Bayliss, S. C., Gumpert, H., Worning, P., Jensen, V. V. S., Pedersen, M., Feil, E. J. & Westh, H., 1 Jul 2019, In : Journal of Antimicrobial Chemotherapy. 74, 7, p. 1776-1785 10 p.

Research output: Contribution to journalArticle

2018
1 Citation (Scopus)

Adipose tissue responses to breaking sitting in men and women with central adiposity

Chen, Y-C., Betts, J., Walhin, J-P. & Thompson, D., 5 Apr 2018, (Accepted/In press) In : Medicine and Science in Sports and Exercise.

Research output: Contribution to journalArticle

A downy mildew effector evades recognition by polymorphism of expression and subcellular localization

Asai, S., Furzer, O. J., Cevik, V., Kim, D. S., Ishaque, N., Goritschnig, S., Staskawicz, B. J., Shirasu, K. & Jones, J. D. G., 5 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 11 p., 5192.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Berthenet, E., Yahara, K., Thorell, K., Pascoe, B., Meric, G., Mikhail, J. M., Engstrand, L., Enroth, H., Burette, A., Megraud, F., Varon, C., Atherton, J. C., Smith, S., Wilkinson, T. S., Hitchings, M. D., Falush, D. & Sheppard, S. K., 2 Aug 2018, In : BMC Biology. 16, 11 p., 84.

Research output: Contribution to journalArticle

Open Access
stomach neoplasms
Helicobacter pylori
Genome-Wide Association Study
Stomach Neoplasms
cancer
5 Citations (Scopus)

A new edentulous pterosaur from the Cretaceous Kem Kem beds of south eastern Morocco

Martill, D. M., Unwin, D. M., Ibrahim, N. & Longrich, N., 1 Apr 2018, In : Cretaceous Research. 84, p. 1-12 12 p.

Research output: Contribution to journalArticle

pterosaur
new species
Cretaceous
new taxon
curvature
3 Citations (Scopus)

A North American stem turaco, and the complex biogeographic history of modern birds

Field, D. & Hsiang, A. Y., 25 Jun 2018, In : BMC Evolutionary Biology. 18, 102

Research output: Contribution to journalArticle

Open Access
fossils
stem
tree crown
bird
fossil record
16 Citations (Scopus)

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

Lawson, D. J., van Dorp, L. & Falush, D., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 3258.

Research output: Contribution to journalArticle

Open Access
plots
History
histories
Genetic Drift
Clustering algorithms
3 Citations (Scopus)

Bordetella pertussis isolates vary in their interactions with human complement components article

Brookes, C., Freire-Martin, I., Cavell, B., Alexander, F., Taylor, S., Persaud, R., Fry, N., Preston, A., Diavatopoulos, D. & Gorringe, A., 1 Dec 2018, In : Emerging Microbes and Infections. 7, 1, 81.

Research output: Contribution to journalArticle

Open Access
Complement C1 Inhibitor Protein
Bordetella pertussis
Complement C3b
Complement Membrane Attack Complex
Whooping Cough

Building bacterial bridges

Hoffmann, T., Reeksting, B., Cooper, R., Paine, K. & Gebhard, S., 15 May 2018, Microbiology Today, 45, 2, p. 60-63 4 p.

Research output: Contribution to specialist publicationArticle

Open Access
1 Citation (Scopus)

Comparative genomic survey of Bacillus cereus sensu stricto isolates from the dairy production chain in Brazil

Marques Rossi, G. A., Silva, H. O., Gamero Aguilar, C. E., Rochetti, A. L., Pascoe, B., Méric, G., Mourkas, E., Hitchings, M. D., Mathias, L. A., De Azevedo Ruiz, V. L., Fukumasu, H., Sheppard, S. K. & Centola Vidal, A. M., 1 Feb 2018, In : FEMS Microbiology Letters. 365, 3, p. 1 - 9 9 p., fnx283.

Research output: Contribution to journalArticle

Open Access
File
Bacillus cereus
Brazil
Dairy Products
Milk
Equipment and Supplies

Comparative population genomics reveals key barriers to dispersal in Southern Ocean penguins

Clucas, G. V., Younger, J. L., Kao, D., Emmerson, L., Southwell, C., Wienecke, B., Rogers, A. D., Bost, C. A., Miller, G. D., Polito, M. J., Lelliott, P., Handley, J., Crofts, S., Phillips, R. A., Dunn, M. J., Miller, K. J. & Hart, T., 1 Dec 2018, In : Molecular Ecology. 27, 23, p. 4680-4697 18 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Convergent amino acid signatures in polyphyletic Campylobacter jejuni sub-populations suggest human niche tropism

Méric, G., McNally, A., Pessia, A., Mourkas, E., Pascoe, B., Mageiros, L., Vehkala, M., Corander, J. & Sheppard, S. K., 14 Feb 2018, In : Genome biology and evolution. p. 763-774

Research output: Contribution to journalArticle

Open Access
tropisms
Campylobacter jejuni
Tropism
subpopulation
human population

Curious Kids: what is a species?

Kover, P., 27 Nov 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

5 Citations (Scopus)

Demographic causes of adult sex ratio variation and their consequences for parental cooperation

Eberhart-Phillips, L. J., Küpper, C., Carmona-Isunza, M. C., Vincze, O., Zefania, S., Cruz-López, M., Kosztolányi, A., Miller, T. E. X., Barta, Z., Cuthill, I. C., Burke, T., Székely, T., Hoffman, J. I. & Krüger, O., 25 Apr 2018, In : Nature Communications. 9, 1, p. 1-8 8 p., 1651.

Research output: Contribution to journalArticle

Open Access
Sex Ratio
Ecology
Demography
causes
Social Behavior
4 Citations (Scopus)

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Méric, G., Mageiros, L., Pensar, J., Laabei, M., Yahara, K., Pascoe, B., Kittiwan, N., Tadee, P., Post, V., Lamble, S., Bowden, R., Bray, J. E., Morgenstern, M., Jolley, K. A., Maiden, M. C. J., Feil, E. J., Didelot, X., Miragaia, M., de Lencastre, H., Moriarty, T. F. & 5 othersRohde, H., Massey, R., Mack, D., Corander, J. & Sheppard, S. K., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 11 p., 5034.

Research output: Contribution to journalArticle

Open Access
Open Access
4 Citations (Scopus)

Distinct modes of derepression of an Arabidopsis immune receptor complex by two different bacterial effectors

Ma, Y., Guo, H., Hu, L., Martinez, P. P., Moschou, P. N., Cevik, V., Ding, P., Duxbury, Z., Sarris, P. F. & Jones, J. D. G., 9 Oct 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 41, p. 10218-10227 10 p.

Research output: Contribution to journalArticle

Open Access
Antigen-Antibody Complex
Leucine
Nucleotides
Colicins
Arabidopsis
6 Citations (Scopus)

Early Evolution of Modern Birds Structured by Global Forest Collapse at the End-Cretaceous Mass Extinction

Field, D., Bercovici, A., Berv, J. S., Dunn, R., Fastovsky, D., Lyson, T. R., Vajda, V. & Gauthier, J., 1 Jun 2018, In : Current Biology . 28, 11, p. 1825-1831 7 p.

Research output: Contribution to journalArticle

Open Access
File
Biological Extinction
Birds
Ecology
extinction
tree crown
2 Citations (Scopus)

Ecological and demographic correlates of cooperation from individual to budding dispersal

Rodrigues, A. M. M. & Taylor, T. B., 1 Jul 2018, In : Journal of Evolutionary Biology. 31, 7, p. 1058-1070

Research output: Contribution to journalArticle

Open Access
File
demographic statistics
cooperatives
population density
philopatry
immigration

Elevated atmospheric CO2 promoted speciation in mosquitoes (Diptera, Culicidae)

Tang, C., Davis, K., Delmer, C., Yang, D. & Wills, M., 5 Nov 2018, In : Communications Biology. 1

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)
Open Access
File
Metschnikowia
Phenylethyl Alcohol
Fragrances
Yeast
Fermentation
2 Citations (Scopus)

Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica

Mühlhausen, S., Schmitt, H. D., Pan, K. T., Plessmann, U., Urlaub, H., Hurst, L. D. & Kollmar, M., 9 Jul 2018, In : Current Biology. 28, 13, p. 2046-2057.e5

Research output: Contribution to journalArticle

Open Access
Ascoidea
RNA, Transfer, Ser
RNA, Transfer, Leu
codons
Codon
4 Citations (Scopus)

Epistasis analysis uncovers hidden antibiotic resistance-associated fitness costs hampering the evolution of MRSA

Yokoyama, M., Stevens, E., Laabei, M., Bacon, L., Heesom, K., Bayliss, S., Ooi, N., O'Neill, A. J., Murray, E., Williams, P., Lubben, A., Reeksting, S., Meric, G., Pascoe, B., Sheppard, S. K., Recker, M., Hurst, L. D. & Massey, R. C., Jul 2018, In : Genome Biology. 19, 1, 94.

Research output: Contribution to journalArticle

Open Access
epistasis
antibiotic resistance
Methicillin-Resistant Staphylococcus aureus
Microbial Drug Resistance
Mupirocin
3 Citations (Scopus)

Exonic splice regulation imposes strong selection at synonymous sites

Savisaar, R. & Hurst, L., 24 Aug 2018, In : Genome Research.

Research output: Contribution to journalArticle

Open Access
Mutation
Inborn Genetic Diseases
Genetic Selection
Codon
Nucleotides
8 Citations (Scopus)

Faster Evolving Primate Genes Are More Likely to Duplicate

O'Toole, Á. N., Hurst, L. D. & McLysaght, A., 1 Jan 2018, In : Molecular Biology and Evolution. 35, 1, p. 107-118 12 p.

Research output: Contribution to journalArticle

Open Access
primate
Primates
gene
Genes
genes
6 Citations (Scopus)

Gene exchange drives the ecological success of a multi-host bacterial pathogen

Richardson, E. J., Bacigalupe, R., Harrison, E. M., Weinert, L. A., Lycett, S., Vrieling, M., Robb, K., Hoskisson, P. A., Holden, M. T. G., Feil, E. J., Paterson, G. K., Tong, S. Y. C., Shittu, A., van Wamel, W., Aanensen, D. M., Parkhill, J., Peacock, S. J., Corander, J., Holmes, M. & Fitzgerald, J. R., 1 Sep 2018, In : Nature Ecology and Evolution. 2, 9, p. 1468-1478 11 p.

Research output: Contribution to journalArticle

Open Access
pathogen
gene
pathogens
genes
Staphylococcus aureus