Department of Biology & Biochemistry

Research Output 1970 2019

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2019

¿Qué ocurriría en la naturaleza si desaparecieran los insectos?

Reynolds, S., 24 Feb 2019, The Conversation.

Research output: Contribution to specialist publicationArticle

A boronic acid-based fluorescent hydrogel for monosaccharide detection

Xu, S., Sedgwick, A. C., Elfeky, S. A., Chen, W., Jones, A. S., Williams, G. T., Jenkins, A. T. A., Bull, S. D., Fossey, J. S. & James, T. D., 21 May 2019, In : Frontiers of Chemical Science and Engineering.

Research output: Contribution to journalArticle

Open Access

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

Soneson, C., Yao, Y., Bratus-Neuenschwander, A., Patrignani, A., Robinson, M. D. & Hussain, M. S., 31 Jul 2019, In : Nature Communications. 10, 1, p. 1-14 14 p., 3359.

Research output: Contribution to journalArticle

Open Access

Adapting for life in the extreme

Kobras, C. M. & Falush, D., 15 Jul 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

Soneson, C., Love, M. I., Patro, R., Hussain, M. S., Malhotra, D. & Robinson, M. D., 1 Feb 2019, In : Life Science Alliance. 2, 1, e201800175.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field

Jouet, A., Saunders, D. G. O., McMullan, M., Ward, B., Furzer, O., Jupe, F., Cevik, V., Hein, I., Thilliez, G. J. A., Holub, E., van Oosterhout, C. & Jones, J. D. G., 1 Feb 2019, In : New Phytologist. 221, 3, p. 1529-1543 15 p.

Research output: Contribution to journalArticle

Open Access
Albugo candida
Plant Diseases
Ploidies
ploidy
Candida

Alpha-Synuclein Structure and Parkinson's Disease – Lessons and Emerging Principles

Meade, R., Fairlie, D. P. & Mason, J., 22 Jul 2019, In : Molecular Neurodegeneration. 14, 1, p. 1-14 14 p., 29.

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

A molecular design strategy to construct the near-infrared fluorescent probe for selectively sensing human cytochrome P450 2J2

Ning, J., Liu, T., Dong, P., Wang, W., Ge, G., Wang, B., Yu, Z., Shi, L., Tian, X., Huo, X., Feng, L., Wang, C., Sun, C., Cui, J-N., James, T. D. & Ma, X., 16 Jan 2019, In : Journal of the American Chemical Society. 141, 2, p. 1126-1134 9 p.

Research output: Contribution to journalArticle

Open Access

A new species of Coloborhynchus (Pterosauria, Ornithocheiridae) from the mid-Cretaceous of North Africa

Jacobs, M. L., Martill, D. M., Ibrahim, N. & Longrich, N., 1 Mar 2019, In : Cretaceous Research. 95, p. 77-88

Research output: Contribution to journalArticle

Archosauromorph extinction selectivity during the Triassic–Jurassic mass extinction

Puttick, M., Allen, B., Stubbs, T. L. & Benton, M. J., 1 Oct 2019, In : Palaeontology. p. 1-14 14 p.

Research output: Contribution to journalArticle

Open Access

A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana

Van de Weyer, A. L., Monteiro, F., Furzer, O. J., Nishimura, M. T., Cevik, V., Witek, K., Jones, J. D. G., Dangl, J. L., Weigel, D. & Bemm, F., 22 Aug 2019, In : Cell. 178, 5, p. 1260-1272.e14

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Aspergillus fumigatushigh osmolarity glycerol mitogen activated protein kinases saka and mpkc physically interact during osmotic and cell wall stresses

Manfiolli, A. O., Mattos, E. C., De Assis, L. J., Silva, L. P., Ulas, M., Brown, N. A., Silva-Rocha, R., Bayram, Ö. & Goldman, G. H., 7 May 2019, In : Frontiers in Microbiology. 10, p. 1-17 17 p., 918.

Research output: Contribution to journalArticle

Open Access

Avelumab in gastric cancer

Roviello, G., D'Angelo, A., Generali, D., Pittacolo, M., Ganzinelli, M., Iezzi, G., Manzini, N. D. & Sobhani, N., 16 May 2019, In : Immunotherapy. 11, 9, p. 759-768 10 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Bacterial biofilm formation on indwelling urethral catheters

Pelling, H., Nzakizwanayo, J., Milo, S., Denham, E. L., MacFarlane, W. M., Bock, L. J., Sutton, J. M. & Jones, B. V., 1 Apr 2019, In : Letters in Applied Microbiology. 68, 4, p. 277-293 17 p.

Research output: Contribution to journalArticle

Biogeography of the fish pathogen Aeromonas salmonicida inferred by vapA genotyping

Gulla, S., Bayliss, S., Björnsdóttir, B., Dalsgaard, I., Haenen, O., Jansson, E., McCarthy, U., Scholz, F., Vercauteren, M., Verner-Jeffreys, D., Welch, T., Wiklund, T. & Colquhoun, D. J., 12 Apr 2019, In : FEMS Microbiology Letters. 366, 7, fnz074.

Research output: Contribution to journalArticle

Open Access

Characterization of melanosomes involved in the production of non-iridescent structural feather colours and their detection in the fossil record

Babarovic, F., Puttick, M. N., Zaher, M., Learmonth, E., Gallimore, E. J., Smithwick, F. M., Mayr, G. & Vinther, J., 28 Jun 2019, In : Journal of The Royal Society Interface. 16, 155, p. 1-9 9 p., 20180921.

Research output: Contribution to journalArticle

Open Access

Cigarette smoke exposure redirects Staphylococcus aureus to a virulence profile associated with persistent infection

Lacoma, A., Edwards, A. M., Young, B. C., Dominguez, J., Prat, C. & Laabei, M., 25 Jul 2019, In : Scientific Reports. 9, 1, 10798.

Research output: Contribution to journalArticle

Open Access
13 Downloads (Pure)
Open Access
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Complete metamorphosis of insects

Rolff, J., Johnson, P. & Reynolds, S., 1 Oct 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1783, p. 1-8 8 p., 20190063.

Research output: Contribution to journalArticle

Open Access

Conditional expression explains molecular evolution of social genes in a microbe

de Oliveira, J. L., Morales, A. C., Stewart, B., Gruenheit, N., Engelmoer, J., Brown, S. B., de Brito, R. A., Hurst, L. D., Urrutia, A. O., Thompson, C. R. L. & Wolf, J. B., 23 Jul 2019, In : Nature Communications. 10, 1, p. 1-12 12 p., 3284.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Conserved transcriptomic profiles underpin monogamy across vertebrates

Young, R. L., Ferkin, M. H., Ockendon-Powell, N. F., Orr, V. N., Phelps, S. M., Pogány, Á., Richards-Zawacki, C. L., Summers, K., Székely, T., Trainor, B. C., Urrutia, A. O., Zachar, G., O’Connell, L. A. & Hofmann, H. A., 22 Jan 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 4, p. 1331-1336 6 p.

Research output: Contribution to journalArticle

Controlled human infection with Bordetella pertussis induces asymptomatic, immunising colonisation

Preston, A., de Graaf, H., Ibrahim, M., Hill, A., Gbesemete, D., Vaughn, A., Gorringe, A., Buisman, A-M., Faust, S., Kester, K., Berbers, G., Diavotopoulos, D. & Read, R., 28 Sep 2019, In : Clinical Infectious Diseases. p. 1-35 35 p.

Research output: Contribution to journalArticle

Open Access
6 Downloads (Pure)
Open Access
File

Core genome sequence analysis to characterize Salmonella enterica serovar Rissen ST469 from a swine production chain

Prasertsee, T., Chuammitri, P., Deeudom, M., Chokesajjawatee, N., Santiyanont, P., Tadee, P., Nuangmek, A., Tadee, P., Sheppard, S. K., Pascoe, B. & Patchanee, P., 2 Sep 2019, In : International Journal of Food Microbiology. 304, p. 68-74 7 p.

Research output: Contribution to journalArticle

Correction to: Molecular Design Strategy to Construct the Near-Infrared Fluorescent Probe for Selectively Sensing Human Cytochrome P450 2J2 (Journal of the American Chemical Society (2019) 141 (1126-1134) DOI: 10.1021/jacs.8b12136)

Ning, J., Liu, T., Dong, P., Wang, W., Ge, G., Wang, B., Yu, Z., Shi, L., Tian, X., Huo, X., Feng, L., Wang, C., Sun, C., Cui, J., James, T. D. & Ma, X., 21 Aug 2019, In : Journal of the American Chemical Society. 141, 33, p. 1-1 1 p., 13278.

Research output: Contribution to journalArticle

3 Citations (Scopus)
8 Downloads (Pure)

Countershading in zebrafish results from an Asip1 controlled dorsoventral gradient of pigment cell differentiation.

Cal, L., Suarez-Bregua, P., Comesana, P., Owen, J., Braasch, I., Kelsh, R. N., Cerda-Reverter, J. & Rotllant, J., 5 Mar 2019, In : Scientific Reports. 9, 1, p. 1-13 13 p., 3449.

Research output: Contribution to journalArticle

Open Access
File

Craniodental and postcranial characters of non-avian Dinosauria often imply different trees

Li, Y., Ruta, M. & Wills, M., 3 Sep 2019, (Accepted/In press) In : Systematic Biology.

Research output: Contribution to journalArticle

Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities

Saitta, E. T., Liang, R., Lau, M. C., Brown, C. M., Longrich, N. R., Kaye, T. G., Novak, B. J., Salzberg, S. L., Norell, M. A., Abbott, G. D., Dickinson, M. R., Vinther, J., Bull, I. D., Brooker, R. A., Martin, P., Donohoe, P., Knowles, T. D., Penkman, K. E. & Onstott, T., 18 Jun 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access

Delta-like 1-mediated cis-inhibition of Jagged1/2 signalling inhibits differentiation of human epidermal cells in culture

Negri, V. A., Logtenberg, M. E. W., Renz, L. M., Oules, B., Walko, G. & Watt, F. M., 25 Jul 2019, In : Scientific Reports. 9, 1, p. 1-11 11 p., 10825.

Research output: Contribution to journalArticle

Open Access

Detailed analysis of paternal knockout Grb10 mice suggests effects on stability of social behavior, rather than social dominance

Rienecker, K. D. A., Chavasse, A. T., Moorwood, K., Ward, A. & Isles, A. R., 29 Apr 2019, In : Genes, Brain and Behavior. e12571.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Dicer1 is required for pigment cell and craniofacial development in zebrafish.

Weiner, A., Scampoli, N., Steeman, T., Dooley, C. M., Busch-Nentwich, E., Kelsh, R. N. & Calcaterra, N., 30 Apr 2019, In : BBA - Gene Regulatory Mechanisms. 1862, 4, p. 472-485 14 p.

Research output: Contribution to journalArticle

Differential expression of a prophage-encoded glycocin and its immunity protein suggests a mutualistic strategy of a phage and its host

Denham, E. L., Piersma, S., Rinket, M., Reilman, E., de Goffau, M. C. & van Dijl, J. M., 26 Feb 2019, In : Scientific Reports. 9, 1, 2845.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Diverse NLR immune receptors activate defence via the RPW8-NLR NRG1

Castel, B., Ngou, P-M., Cevik, V., Redkar, A., Kim, D-S., Yang, Y., Ding, P. & Jones, J. D. G., 1 Apr 2019, In : New Phytologist. 222, 2, p. 966-980 5 p.

Research output: Contribution to journalArticle

Open Access

Diversity of staphylococcal species cultured from captive livingstone's fruit bats (pteropus livingstonii) and their environment

Fountain, K., Roberts, L., Young, V., Barbon, A., Frosini, S. M., Lloyd, D. H. & Loeffler, A., 5 Apr 2019, In : Journal of Zoo and Wildlife Medicine . 50, 1, p. 266-269 4 p.

Research output: Contribution to journalArticle

Domestication of Campylobacter jejuni NCTC 11168

Pascoe, B., Williams, L. K., Calland, J. K., Meric, G., Hitchings, M. D., Dyer, M., Ryder, J., Shaw, S., Lopes, B. S., Chintoan-Uta, C., Allan, E., Vidal, A., Fearnley, C., Everest, P., Pachebat, J. A., Cogan, T. A., Stevens, M. P., Humphrey, T. J., Wilkinson, T. S., Cody, A. J. & 12 others, Colles, F. M., Jolley, K. A., Maiden, M. C. J., Strachan, N., Pearson, B. M., Linton, D., Wren, B. W., Parkhill, J., Kelly, D. J., van Vliet, A. H. M., Forbes, K. J. & Sheppard, S. K., 1 Jul 2019, In : Microbial Genomics. 5, 7, 000279.

Research output: Contribution to journalArticle

Open Access
106 Downloads (Pure)
Open Access
File
Catheters
Economics

Endothelin neurotransmitter signalling controls zebrafish social behaviour

Carreno-Gutierrez, H., Colanesi, S., Cooper, B., Kelsh, R. N., Reichmann, F., Young, A. & Norton, W., 28 Feb 2019, In : Scientific Reports. 9, 1, 3040.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
24 Downloads (Pure)

Endothelin receptor Aa regulates proliferation and differentiation of Erb-dependent pigment progenitors in zebrafish

Camargo Sosa, K., Colanesi, S., Muller, J., Schulte-Mercker, S., Stemple, D., Patton, E. & Kelsh, R. N., 27 Feb 2019, In : Plos Genetics. 15, 2, p. e1007941

Research output: Contribution to journalArticle

Open Access
File

Engineering Escherichia coli for the production of butyl octanoate from endogenous octanoyl-CoA

Chacón, M. G., Kendrick, E. G. & Leak, D. J., 1 Jul 2019, In : PeerJ. 7, e6971.

Research output: Contribution to journalArticle

Open Access

Esterification of geraniol as a strategy for increasing product titre and specificity in engineered Escherichia coli

Chacón, M. G., Marriott, A., Kendrick, E. G., Styles, M. Q. & Leak, D. J., 8 Jun 2019, In : Microbial Cell Factories. 18, 1, p. 1-11 11 p., 105.

Research output: Contribution to journalArticle

Open Access

Evolutionary Quantitative Genetics of Genomic Imprinting

O'Brien, E. K. & Wolf, J. B., 1 Jan 2019, In : Genetics. 211, 1, p. 75-88 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
27 Downloads (Pure)

Excitation-energy-dependent molecular beacon detects early stage neurotoxic aβ aggregates in the presence of cortical neurons

Gulácsy, C. E., Meade, R., Catici, D. A. M., Soeller, C., Pantos, G. D., Jones, D. D., Alibhai, D., Jepson, M., Valev, V. K., Mason, J. M., Williams, R. J. & Pudney, C. R., 20 Mar 2019, In : ACS Chemical Neuroscience. 10, 3, p. 1240-1250 11 p.

Research output: Contribution to journalArticle

Open Access
File

Exploring new strategies for grafting binding peptides onto protein loops using a consensus-designed tetratricopeptide repeat scaffold

Madden, S. K., Perez-Riba, A. & Itzhaki, L. S., 11 Feb 2019, In : Protein Science. 28, 4, p. 738-745 8 p.

Research output: Contribution to journalArticle

6 Downloads (Pure)

Exposing the Interplay Between Enzyme Turnover, Protein Dynamics and the Membrane Environment in Monoamine Oxidase B

Jones, H. B. L., Crean, R. M., Mullen, A., Kendrick, E., Bull, S. D., Wells, S. A., Carbery, D. R., MacMillan, F., van der Kamp, M. W. & Pudney, C. R., 7 May 2019, In : Biochemistry. 58, 18, p. 2362-2372 11 p.

Research output: Contribution to journalArticle

Open Access
File

FICC-Seq: a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA

Carter, J-M., Emmett, W., Rdl Mozos, I., Kotter, A., Helm, M., Ule, J. & Hussain, M. S., 30 Jul 2019, In : Nucleic Acids Research. p. 1-12 12 p., gkz658.

Research output: Contribution to journalArticle

Open Access

Frequency, mutual exclusivity and clinical associations of myositis autoantibodies in a combined European cohort of idiopathic inflammatory myopathy patients

Betteridge, Z., Tansley, S., Shaddick, G., Chinoy, H., Cooper, R. G., New, R. P., Lilleker, J. B., Vencovsky, J., Chazarain, L., Danko, K., Nagy-Vincze, M., Bodoki, L., Dastmalchi, M., Ekholm, L., Lundberg, I. E. & McHugh, N., 1 Jul 2019, In : Journal of Autoimmunity. 101, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access

Functional characterization of BcrR: a one-component transmembrane signal transduction system for bacitracin resistance

Darnell, R., Nakatani, Y., Knottenbelt, M., Gebhard, S. & Cook, G. M., 1 Apr 2019, In : Microbiology. 165, 4, p. 475-487 13 p.

Research output: Contribution to journalArticle