Department of Biology & Biochemistry

Research Output 1970 2020

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2011

Poblamiento temprano de America

Translated title of the contribution: Early peopling of the America continentUrrutia, A. & Urrutia Fucugauchi, J., 2011, Quaternario. National University of Mexico, UNAM

Research output: Chapter in Book/Report/Conference proceedingChapter

Resolving the greatest war of human nature

Rayner, A. D. M., 2011, Identity, Democracy and Sustainability. McIntyre, J. & De Vries, D. (eds.). Litchfield Park, Arizona: Emergent Publications, p. 255-256 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012
4 Citations (Scopus)

Analysis of protein glycation using phenylboronate acrylamide gel electrophoresis

Pereira Morais, M. P., Fossey, J. S., James, T. D. & van den Elsen, J., 2012, Protein Electrophoresis. Kurien, B. T. & Scofield, R. H. (eds.). 869 ed. Springer, p. 93-109 17 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acrylamide
Electrophoresis
Gels
Proteins
Processed foods
1 Citation (Scopus)

Aromatic Oxidations

Leak, D. J., Yin, Y., Zhang, J. J. & Zhou, N. Y., 20 Apr 2012, Enzyme Catalysis in Organic Synthesis, Third Edition. Wiley-VCH, Vol. 3. p. 1487-1533 47 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Cellular Reprogramming During Mouse Development

Burke, Z. D., Miron-Buchacra, G. & Tosh, D., 2012, Mouse Development. Kubiak, J. Z. (ed.). Berlin: Springer, p. 291-302

Research output: Chapter in Book/Report/Conference proceedingChapter

Switch Genes
Developmental Biology
Regenerative Medicine
Cellular Reprogramming
Cell Differentiation

Evolutionary genomics of the sperm proteome

Karr, T. L. & Dorus, S., 2012, Rapidly Evolving Genes and Genetic Systems. Singh, R. S., Xu, J. & Kulathinal, R. J. (eds.). Oxford, UK: Oxford University Press, p. 153-164 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

How cells change their phenotype

Tosh, D. & Horb, M. E., 2012, Handbook of Stem Cells: Volume 1: Pluripotent Stem Cells (2nd ed.). Atala, A. & Lanza, R. (eds.). Oxford, U. K.: Elsevier, p. 95-100 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phenotype
Stem Cells
Research
Direction compound

Induced pluripotent stem cells and the prospects for cardiac cell therapy.

Dutton, J. R. & Slack, J., 2012, Coronary Heart Disease: Clinical, Pathological, Imaging and Molecular Profiles. Vlodaver, Z., Wilson, R. F. & Garry, D. J. (eds.). Springer

Research output: Chapter in Book/Report/Conference proceedingChapter

Induced Pluripotent Stem Cells
Cell- and Tissue-Based Therapy
Myocardial Ischemia
Coronary Disease
Atherosclerosis

Introduction

Brown, D. R., 31 Jul 2012, Brain Diseases and Metalloproteins . Brown, D. R. (ed.). Singapore: Pan Stanford Publishing, p. 1-10 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Practical Manual of In Vitro Fertilization: Livestock production via micromanipulation

Onishi, A. & Perry, T., 2012, Practical Manual of In Vitro Fertilization : Livestock production via micromanipulation . 7 ed. Springer, Vol. 41. p. 371 375 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Prion diseases, metals and antioxidants

Davies, P. & Brown, D. R., 31 Jul 2012, Brain Diseases and Metalloproteins . Brown, D. R. (ed.). Singapore: Pan Stanford Publishing, p. 249-293 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Prion Diseases
Antioxidants
Metals
Proteins
Metalloproteins

The human microbiome co-evolutionary continuum

Jones, B., Ogilvie, L. & Overall, A., 2012, Microbial Ecological Theory: Current Perspectives. Ogilvie, L. & Hirsch, P. (eds.). Caister Academic Press, p. 25-42

Research output: Chapter in Book/Report/Conference proceedingChapter

The Human-Microbiome Coevolutionary Continuum

Jones, B., Ogilvie, L. & Overall, A., 2012, Microbial Ecological Theory. Ogilvie, L. & Hirsch, P. (eds.). Caister Academic Press, p. 25-42

Research output: Chapter in Book/Report/Conference proceedingChapter

2013
3 Citations (Scopus)

Agroinfiltration of Nicotiana benthamiana leaves for co-localization of regulatory proteins involved in jasmonate signaling

Cevik, V. & Kazan, K., Apr 2013, Jasmonate Signaling: Methods and Protocols, Part III. Goossens, A. & Pauwels, L. (eds.). Humana Press, p. 199-208 10 p. (Methods in Molecular Biology : Methods and Protocols; vol. 1011).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tobacco
Proteins
jasmonic acid
Plant Growth Regulators

Ganoderma basal stem rot, Fusarium vascular wilt and fatal yellowing as major diseases of oil palms: lessons and strategies for understanding and controlling fungal forest pathogens

Cooper, R. M., 2013, Patologia Florestal: Desafios E Perspectivas . Santos, B. A. S. (ed.). Lavras, Brazil: UFLA – Universidade Federal de Lavras, p. 181-202

Research output: Chapter in Book/Report/Conference proceedingChapter

How cells change their phenotype

Tosh, D. & Horb, M. E., 4 Nov 2013, Essentials of Stem Cell Biology (3rd ed.). Lanza, R. & Atala, A. (eds.). San Diego, U. S. A.: Elsevier, p. 107-117 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phenotype
Stem Cells
Research
Direction compound

J coupling

Bagby, S., 2013, Encyclopedia of Biophysics. Roberts, G. C. K. (ed.). Springer

Research output: Chapter in Book/Report/Conference proceedingChapter

nuclear spin
chemical bonds
electron spin
scalars
nuclei
5 Citations (Scopus)

Live imaging, identifying and tracking single cells in complex populations in vivo and ex vivo

Kang, M., Xenopoulos, P., Munoz-Descalzo, S., Lou, X. & Hadjantonakis, A-K., 2013, Imaging and Tracking Stem Cells: Methods and Protocols. Turksen, K. (ed.). Humana Press, p. 109-123 (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Potential neuroprotective actions of dietary flavonoids

Vazour, D., Rattray, M., Williams, R. J. & Spencer, J., 1 Jan 2013, Handbook of Natural Products: Natural Products. Ramawat, K. G. & Merillion, J-M. (eds.). Springer, p. 2617-2640

Research output: Chapter in Book/Report/Conference proceedingChapter

Flavonoids
Action Potentials
Neuronal Plasticity
Brain
Aptitude
1 Citation (Scopus)

Real-time content-aware texturing for deformable surfaces

Koniaris, C., Cosker, D., Yang, X., Mitchell, K. & Matthews, I., 6 Nov 2013, ACM International Conference Proceeding Series. 10 p. 11

Research output: Chapter in Book/Report/Conference proceedingChapter

Texturing
Animation
Textures
Nonlinear distortion
Parameterization
5 Citations (Scopus)

Seed Development in Interploidy Hybrids

Scott, R. J., Tratt, J. & Bolbol, A., 4 Apr 2013, Polyploid and Hybrid Genomics. Chen, Z. J. & Birchler, J. A. (eds.). Oxford, UK: Wiley, p. 271-290 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

seed development
hybridization
imprinting behavior
endosperm
Arabidopsis thaliana
24 Citations (Scopus)

Staphylococcus epidermidis in biomaterial-associated infections

Mack, D., Davies, A. P., Harris, L. G., Jeeves, R., Pascoe, B., Knobloch, J. K. M., Rohde, H. & Wilkinson, T. S., 1 Nov 2013, Biomaterials Associated Infection: Immunological Aspects and Antimicrobial Strategies. Moriarty, F. & Zaat, S. A. J. (eds.). New York, U. S. A.: Springer New York, p. 25-56 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Staphylococcus epidermidis
Biocompatible Materials
Infection
Biofilms
Equipment and Supplies

Synergistic sharing of data and tools to enable team science

Mounce, R. & Janies, D., 29 Nov 2013, Computation for Humanity: Information Technology to Advance Society. Zander, J. & Mosterman, P. J. (eds.). CRC Press, p. 437-447 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Interoperability
Genomics

The Human Gut Mobile Metagenome: A Metazoan Perspective

Ogilvie, L. A. & Jones, B. V., 2013, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-14 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Does Biofilm Formation Aid Colonization and Infection in Campylobacter?

Pascoe, B., Lappin-Scott, H., Asakura, H. & Sheppard, S., 1 Apr 2014, Campylobacter Ecology and Evolution. Sheppard, S. & Meric, G. (eds.). Norwich, UK: Caister Academic Press, p. 177-188

Research output: Chapter in Book/Report/Conference proceedingChapter

Campylobacter Infections
Biofilms
Campylobacter
Cell Aggregation
Bacteria

Enzyme biotransformations and reactors

Emanuelsson, E. A. C. & Leak, D., 16 Dec 2014, Chemical Processes for a Sustainable Future. Letcher, T., Scott, J. & Patterson, D. (eds.). Royal Society of Chemistry

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Fungal-Actinomycete Interactions - Wakening of Silent Fungal Secondary Metabolism Gene Clusters via Interorganismic Interactions

Schroeckh, V., Nützmann, H. W. & Brakhage, A. A., 5 May 2014, Natural Products: Discourse, Diversity, and Design. Osbourn, A., Goss, R. & Carter, G. T. (eds.). Wiley-Blackwell, p. 147-158 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary Metabolism
Actinobacteria
Multigene Family
Drug Discovery
Microbiology
7 Citations (Scopus)

Genotype-by-Environment Interactions when the Social Environment Contains Genes

Wolf, J. B., Royle, N. J. & Hunt, J., 20 Oct 2014, Genotype-by-Environment Interactions and Sexual Selection. Wiley-Blackwell Publishing Ltd, p. 63-97 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metagenomic Analysis of Bile Salt Hydrolases in the Human Gut Microbiome

Jones, B. V. & Gahan, C. G. M., 15 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mobile Metagenome

Jones, B. V., 16 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-15 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Molecular Biology of the Cell

Slack, J., 2014, Principles of Tissue Engineering. Lanza, R., Langer, R. & Vacanti, J. P. (eds.). 4th Edition ed. Elsevier Academic Press Inc, p. 127-145 18 p. Chapter 7

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Biology
Gene Expression
Cytoskeleton
Actin Cytoskeleton
Cell Adhesion
4 Citations (Scopus)

Neural Crest Cells and Pigmentation

Lapedriza, A., Petratou, K. & Kelsh, R. N., 2014, Neural Crest Cells: Evolution, Development and Disease. Trainor, P. (ed.). 1st ed. Boston, U. S. A.: Elsevier Academic Press Inc, p. 287-311

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Data and Palaeontology

Mounce, R., 19 Dec 2014, Issues in Open Research Data. Moore, S. A. (ed.). London: Ubiquity Press, p. 151 164 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

science

Plasmid Capture from Metagenomes

Jones, B. V., 15 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Practical aspects on the use of kinetic isotope effects as probes of flavoprotein enzyme mechanisms

Pudney, C. R., Hay, S. & Scrutton, N. S., 2014, Flavins and Flavoproteins. Weber, S. & Schleicher, E. (eds.). New York: Humana Press, p. 161-175 15 p. (Methods in Molecular Biology; vol. 1146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Flavoproteins
Isotopes
Kinetics
Enzymes
Coenzymes

The Candida albicans Hsp90 Chaperone Network is Environmentally Flexible and Evolutionarily Divergent

Diezmann, S., 2014, The Molecular Chaperones Interaction Networks in Protein Folding and Degradation. Houry, W. (ed.). Springer, p. 185-206

Research output: Chapter in Book/Report/Conference proceedingChapter

HSP90 Heat-Shock Proteins
Candida albicans
Virulence
Fungal Drug Resistance
Molecular Chaperones

Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens

Castillo-Ramirez, S. & Feil, E. J., 26 Nov 2014, Molecular Medical Microbiology. Tang, Y-W., Sussman, M., Liu, D., Poxton, I. & Schwartzman, J. (eds.). Second ed. Elsevier, Vol. 1. p. 337-345 9 p. Chapter 18

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial Genomes
Metagenomics
Epidemiology
Population Genetics
Pathogens
2015
5 Citations (Scopus)

Analysis of DNA methylation patterns in single blastocysts by Pyrosequencing(®).

Huntriss, J., Woodfine, K., Huddleston, J. E., Murrell, A. & Picton, H. M., 2015, Pyrosequencing: Methods and Protocols - Part III. Lehmann, U. & Tost, J. (eds.). New York, U. S. A.: Springer, p. 259-270 (Methods in Molecular Biology; vol. 1315).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA methylation
blastocyst
epigenetics
embryo (animal)
assisted reproductive technologies

Epigenetics and disease

Murrell, A., Nov 2015, Epigenetics for Drug Discovery. Carey, N. (ed.). Abingdon, U. K.: Royal Society of Chemistry, p. 47-67 21 p. (RSC Drug Discovery Series; vol. January 2016, no. 48).

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Mutation
Genomic Imprinting
Gene Expression
DNA Methylation
7 Citations (Scopus)

Secreted biomolecules in fungal plant pathogenesis

Brown, N. A. & Hammond-Kosack, K. E., 30 Jan 2015, Fungal Biomolecules: Sources, Applications and Recent Developments. Kumar Gupta, V., Mach, R. L. & Sreenivasaprasad, S. (eds.). Chichester, U. K.: Wiley, p. 263-310 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomolecules
Cysteine
Virulence
Pathogens
Edible Plants

The potential role of bacteriophages in shaping plant-bacterial interactions

Koskella, B. & Taylor, T. B., Mar 2015, Bacteria-Plant Interactions: Advanced Research and Future Trends. Murillo, J., Vinatzer, B. A., Jackson, R. W. & Arnold, D. L. (eds.). Poole. U. K.: Caister Academic Press, p. 199-220

Research output: Chapter in Book/Report/Conference proceedingChapter

2016
3 Citations (Scopus)

Application of a Bacillus subtilis whole-cell biosensor (PliaI-lux) for the identification of cell wall active antibacterial compounds

Kobras, C. M., Mascher, T. & Gebhard, S., 22 Nov 2016, Antibiotics: Methods and Protocols. Sass, P. (ed.). New York. U. S. A.: Springer Verlag, p. 121-131 7. (Methods in Molecular Biology; vol. 1520).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Citations (Scopus)

Beyond a simple effect: Variable and changing responses to anthropogenic noise

Radford, A. N., Purser, J., Bruintjes, R., Voellmy, I. K., Everley, K. A., Wale, M. A., Holles, S. & Simpson, S. D., 2016, Advances in Experimental Medicine and Biology. Springer New York, Vol. 875. p. 901-907 7 p. (Advances in Experimental Medicine and Biology; vol. 875).

Research output: Chapter in Book/Report/Conference proceedingChapter

Aquatic organisms
Aquatic Organisms
Physiology
Noise
Recovery
170 Downloads (Pure)

Design and performance of bacteria-based self-healing Concrete

Paine, K., Alazhari, M., Sharma, T., Cooper, R. & Heath, A., Jul 2016, The 9th International Concrete Conference 2016: Environment, Efficiency and Economic Challenges for Concrete. Jones, M. R., Newlands, M. D., Halliday, J. E., Csetenyi, L. J., Zheng, L., McCarthy, M. J. & Dyer, T. D. (eds.). Dundee, p. 545-554

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
Bacteria
Concretes
Impurities
Microbiology
Calcite

DNA, RNA, protein; Mendelian genetics; Population genetics; Epigenetics; Genomics and other 'omics; Bill Hamilton; and, Cancer

Taylor, T., 8 Sep 2016, 30-Second Biology: The 50 Most Thought-Provoking Theories of Life, Each Explained in Half a Minute. Battey, N. & Fellowes, M. (eds.). Lewes, U. K.: Ivy Press, p. 36-47 & 84 12 p. (30 Second Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Functional and Genetic Analysis of Plectin in Skin and Muscle

Rezniczek, G. A., Winter, L., Walko, G. & Wiche, G., 2016, Methods in Enzymology. Elsevier Academic Press Inc, Vol. 569. p. 235-259 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plectin
Muscle
Skin
Plakins
Exons

How can we remove barriers to increased usage of indigenous crops?

Sanders, H. L., Hollington, P. A., Pasquini, M. W. & Carpena, P. C., 1 May 2016, Proceedings of the International Symposium on Indigenous Vegetables (ActaHorticulturae). Wang, J. F. & Mecozzi, M. (eds.). International Society for Horticultural Science, p. 127-134 8 p. (Acta Horticulturae; vol. 1102).

Research output: Chapter in Book/Report/Conference proceedingChapter

crops
supply chain
case studies
food security
households
3 Citations (Scopus)

Mapping long noncoding RNA chromatin occupancy using capture hybridization analysis of RNA targets (CHART)

Vance, K. W., 24 Sep 2016, Enhancer RNAs: Methods and Protocols. Andersson Orom, U. (ed.). New York, U. S. A.: Springer, p. 39-50 12 p. (Methods in Molecular Biology; vol. 1468).

Research output: Chapter in Book/Report/Conference proceedingChapter

Long Noncoding RNA
Chromatin
RNA
Genome
Ribonuclease H

Probing Chromosome Dynamics in Bacillus subtilis

Koh, A. & Murray, H., 10 Jun 2016, Chromosome Architecture. Leake, M. (ed.). New York, USA: Humana Press, p. 91-108 18 p. (Methods in Molecular Biology; vol. 1431).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial Chromosomes
Chromosome Structures
Bacterial Genomes
Chromosome Segregation
Bacillus subtilis
1 Citation (Scopus)

Turning one cell type into another

Slack, J. M. W., 7 Jan 2016, Current Topics in Developmental Biology. Wassarman, P. M. (ed.). Elsevier, Vol. 117. p. 339-358

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcription Factors
Embryonic Structures
Population