Department of Biology & Biochemistry

Research Output 1970 2019

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2019

An In Vitro Bladder Model for Studying Catheter- Associated Urinary Tract Infection and Associated Analysis of Biofilms

Jones, B., Nzakizwanayo, J. & Milo, S., 25 Mar 2019, (Accepted/In press) Proteus mirabilis - Methods and Protocols. Pearson, M. (ed.). Springer Nature

Research output: Chapter in Book/Report/Conference proceedingChapter

Cyclizing Disulfide-Rich Peptides Using Sortase A

Agwa, A. J., Craik, D. J. & Schroeder, C. I., 30 Jun 2019, Enzyme-Mediated Ligation Methods. Schmidt, M. & Nuijens, T. (eds.). New York: Springer, Vol. 2012. p. 29-41 13 p. (Methods in molecular biology (Clifton, N.J.)).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evidence for the Success of a Quantitative Assessment Instrument for Teaching Evolution in Primary Schools in England

Buchan, L., Hejmadi, M. & Hurst, L., 2019, Evolution Education Re-considered. Harms, U. & Reiss, M. (eds.). UK: Springer, p. 21-40 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence-activated Cell Sorting and NanoString profiling of Single Neural Crest Cells and Pigment Cells

Subkhankulova, T. & Kelsh, R. N., 12 Apr 2019, Methods Relevant to Neural Crest Research. Schwartz, Q. & Wizniak, S. (eds.). Springer, p. 185-193 (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

Live imaging of neural crest and pigment cells and transient transgenic manipulation of gene activity

Ballim, R., Nagao, Y. & Kelsh, R. N., 12 Apr 2019, Neural Crest Cells. Schwartz, Q. & Wizniak, S. (eds.). Springer, p. 195-206 (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neural Crest Methodologies in Zebrafish and Medaka: Transcript and protein detection methodologies for neural crest research on whole mount zebrafish and medaka

Petratou, K., Camargo Sosa, K., Al Jabri, R., Nagao, Y. & Kelsh, R. N., 12 Apr 2019, Methods relevant to Neural Crest Research. Schwartz, Q. & Wizniak, S. (eds.). Springer, (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Analysis of Protein Glycation Using Phenylboronate Acrylamide Gel Electrophoresis

Pereira Morais, M., Munir, O. K., Flower, S., Williams, R. J., James, T. & Van Den Elsen, J., 14 Nov 2018, Electrophoretic Separation of Proteins: Methods and Protocols. T. Kurien, B. & Hal Scofield, R. (eds.). New York, U. S. A.: Humana Press, p. 161-175 (Methods in Molecular Biology; vol. 1855).

Research output: Chapter in Book/Report/Conference proceedingChapter

Imaging “Hot-Wired” clathrin-mediated endocytosis

Wood, L. A. & Royle, S. J., 2018, Methods in Molecular Biology. New York, U. S. A.: Humana Press, p. 83-94 12 p. (Methods in Molecular Biology; vol. 1847).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clathrin
Endocytosis
Eukaryotic Cells
Microscopy
Cell Membrane

Intracytoplasmic sperm injection (ICSI): applications and insights

Suzuki, T. & Perry, A. C. F., 4 Jan 2018, Intracytoplasmic Sperm Injection. Palermo, G. D. & Sills, E. S. (eds.). Cham, Switzerland: Springer International Publishing, p. 169-181 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

intracytoplasmic sperm injection
totipotency
fertilization (reproduction)
oocytes
spermatozoa
2017

Aspects of host-pathogen interactions as applied in breeding for disease resistance against Ganoderma stem rots, Fusarium wilt, and spear/bud rots

Cooper, R., Aug 2017, Oil Palm Breeding, Genetics and Genomics.. Soh, A. C., Mayes, S. & Roberts, J. A. (eds.). CRC Press, p. 106-119 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of Insulin-Activated Rab Proteins in Adipose Cells Using Bio-ATB-GTP Photolabeling Technique

Koumanov, F. & Holman, G. D., 8 Dec 2017, Glucose Transport: Methods and Protocols. Lindkvist-Petersson, K. & Hansen, J. S. (eds.). New York City, USA: Humana Press, p. 137-150 14 p. (Methods in Molecular Biology; vol. 1713).

Research output: Chapter in Book/Report/Conference proceedingChapter

Guanosine Triphosphate
Insulin
Proteins
Diazomethane
Streptavidin

Metals and Prions: Twenty years of mining the awe

Brown, D., 28 Apr 2017, Biometals in Neurodegenerative Diseases: Mechanisms and Therapeutics. White, A. R., Aschner, M., Costa, L. G. & Bush, A. I. (eds.). London, U. K.: Elsevier Academic Press Inc, p. 95-115

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein dynamics revealed by CPMG dispersion

Ishima, R. & Bagby, S., Jul 2017, Modern Magnetic Resonance, 2nd edition. Webb, G. (ed.). 9783319283876: Springer, p. 435-452

Research output: Chapter in Book/Report/Conference proceedingChapter

gills
nuclear magnetic resonance spectroscopy
proteins
methodology

The Evolution and Dynamics of Methicillin-Resistant Staphylococcus aureus

Abdelbary, M. M. H., Basset, P., Blanc, D. S. & Feil, E. J., 8 Feb 2017, Genetics and Evolution of Infectious Diseases (2nd Ed.). Tibayrenc, M. (ed.). Elsevier, p. 553-572 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Methicillin-Resistant Staphylococcus aureus
Staphylococcus aureus
Interspersed Repetitive Sequences
Clone Cells
Genome

Use of hexose photolabels to reveal the structure and function of glucose transporters

Holman, G. D., 2017, Photoaffinity labeling for structural probing within protein. Springer Japan, Vol. 978-4-431-56569-7. p. 183-196 14 p. 9

Research output: Chapter in Book/Report/Conference proceedingChapter

2016
3 Citations (Scopus)

Application of a Bacillus subtilis whole-cell biosensor (PliaI-lux) for the identification of cell wall active antibacterial compounds

Kobras, C. M., Mascher, T. & Gebhard, S., 22 Nov 2016, Antibiotics: Methods and Protocols. Sass, P. (ed.). New York. U. S. A.: Springer Verlag, p. 121-131 7. (Methods in Molecular Biology; vol. 1520).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

Beyond a simple effect: Variable and changing responses to anthropogenic noise

Radford, A. N., Purser, J., Bruintjes, R., Voellmy, I. K., Everley, K. A., Wale, M. A., Holles, S. & Simpson, S. D., 2016, Advances in Experimental Medicine and Biology. Springer New York, Vol. 875. p. 901-907 7 p. (Advances in Experimental Medicine and Biology; vol. 875).

Research output: Chapter in Book/Report/Conference proceedingChapter

Aquatic organisms
Aquatic Organisms
Physiology
Noise
Recovery

Design and performance of bacteria-based self-healing Concrete

Paine, K., Alazhari, M., Sharma, T., Cooper, R. & Heath, A., Jul 2016, The 9th International Concrete Conference 2016: Environment, Efficiency and Economic Challenges for Concrete. Jones, M. R., Newlands, M. D., Halliday, J. E., Csetenyi, L. J., Zheng, L., McCarthy, M. J. & Dyer, T. D. (eds.). Dundee, p. 545-554

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
Bacteria
Concretes
Impurities
Microbiology
Calcite

DNA, RNA, protein; Mendelian genetics; Population genetics; Epigenetics; Genomics and other 'omics; Bill Hamilton; and, Cancer

Taylor, T., 8 Sep 2016, 30-Second Biology: The 50 Most Thought-Provoking Theories of Life, Each Explained in Half a Minute. Battey, N. & Fellowes, M. (eds.). Lewes, U. K.: Ivy Press, p. 36-47 & 84 12 p. (30 Second Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Functional and Genetic Analysis of Plectin in Skin and Muscle

Rezniczek, G. A., Winter, L., Walko, G. & Wiche, G., 2016, Methods in Enzymology. Elsevier Academic Press Inc, Vol. 569. p. 235-259 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plectin
Muscle
Skin
Plakins
Exons

How can we remove barriers to increased usage of indigenous crops?

Sanders, H. L., Hollington, P. A., Pasquini, M. W. & Carpena, P. C., 1 May 2016, Proceedings of the International Symposium on Indigenous Vegetables (ActaHorticulturae). Wang, J. F. & Mecozzi, M. (eds.). International Society for Horticultural Science, p. 127-134 8 p. (Acta Horticulturae; vol. 1102).

Research output: Chapter in Book/Report/Conference proceedingChapter

crops
supply chain
case studies
food security
households
3 Citations (Scopus)

Mapping long noncoding RNA chromatin occupancy using capture hybridization analysis of RNA targets (CHART)

Vance, K. W., 24 Sep 2016, Enhancer RNAs: Methods and Protocols. Andersson Orom, U. (ed.). New York, U. S. A.: Springer, p. 39-50 12 p. (Methods in Molecular Biology; vol. 1468).

Research output: Chapter in Book/Report/Conference proceedingChapter

Long Noncoding RNA
Chromatin
RNA
Genome
Ribonuclease H

Probing Chromosome Dynamics in Bacillus subtilis

Koh, A. & Murray, H., 10 Jun 2016, Chromosome Architecture. Leake, M. (ed.). New York, USA: Humana Press, p. 91-108 18 p. (Methods in Molecular Biology; vol. 1431).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial Chromosomes
Chromosome Structures
Bacterial Genomes
Chromosome Segregation
Bacillus subtilis
1 Citation (Scopus)

Turning one cell type into another

Slack, J. M. W., 7 Jan 2016, Current Topics in Developmental Biology. Wassarman, P. M. (ed.). Elsevier, Vol. 117. p. 339-358

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcription Factors
Embryonic Structures
Population
3 Citations (Scopus)

Visualizing and quantitating the spatiotemporal regulation of Ras/ERK signaling by dual-specificity mitogen-activated protein phosphatases (MKPs)

Caunt, C. J., Kidger, A. M. & Keyse, S. M., 12 Aug 2016, Protein Tyrosine Phosphatases: Methods and Protocols. Pulido, R. (ed.). Springer, p. 197-215 19 p. (Methods in Molecular Biology; vol. 1447).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
Phosphoprotein Phosphatases
Mitogens
Mitogen-Activated Protein Kinase Phosphatases
MAP Kinase Signaling System
Phosphoric Monoester Hydrolases
2015
4 Citations (Scopus)

Analysis of DNA methylation patterns in single blastocysts by Pyrosequencing(®).

Huntriss, J., Woodfine, K., Huddleston, J. E., Murrell, A. & Picton, H. M., 2015, Pyrosequencing: Methods and Protocols - Part III. Lehmann, U. & Tost, J. (eds.). New York, U. S. A.: Springer, p. 259-270 (Methods in Molecular Biology; vol. 1315).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA methylation
blastocyst
epigenetics
embryo (animal)
assisted reproductive technologies

Epigenetics and disease

Murrell, A., Nov 2015, Epigenetics for Drug Discovery. Carey, N. (ed.). Abingdon, U. K.: Royal Society of Chemistry, p. 47-67 21 p. (RSC Drug Discovery Series; vol. January 2016, no. 48).

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Mutation
Genomic Imprinting
Gene Expression
DNA Methylation
5 Citations (Scopus)

Secreted biomolecules in fungal plant pathogenesis

Brown, N. A. & Hammond-Kosack, K. E., 30 Jan 2015, Fungal Biomolecules: Sources, Applications and Recent Developments. Kumar Gupta, V., Mach, R. L. & Sreenivasaprasad, S. (eds.). Chichester, U. K.: Wiley, p. 263-310 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomolecules
Cysteine
Virulence
Pathogens
Edible Plants

The potential role of bacteriophages in shaping plant-bacterial interactions

Koskella, B. & Taylor, T. B., Mar 2015, Bacteria-Plant Interactions: Advanced Research and Future Trends. Murillo, J., Vinatzer, B. A., Jackson, R. W. & Arnold, D. L. (eds.). Poole. U. K.: Caister Academic Press, p. 199-220

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Does Biofilm Formation Aid Colonization and Infection in Campylobacter?

Pascoe, B., Lappin-Scott, H., Asakura, H. & Sheppard, S., 1 Apr 2014, Campylobacter Ecology and Evolution. Sheppard, S. & Meric, G. (eds.). Norwich, UK: Caister Academic Press, p. 177-188

Research output: Chapter in Book/Report/Conference proceedingChapter

Campylobacter Infections
Biofilms
Campylobacter
Cell Aggregation
Bacteria

Enzyme biotransformations and reactors

Emanuelsson, E. A. C. & Leak, D., 16 Dec 2014, Chemical Processes for a Sustainable Future. Letcher, T., Scott, J. & Patterson, D. (eds.). Royal Society of Chemistry

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Fungal-Actinomycete Interactions - Wakening of Silent Fungal Secondary Metabolism Gene Clusters via Interorganismic Interactions

Schroeckh, V., Nützmann, H. W. & Brakhage, A. A., 5 May 2014, Natural Products: Discourse, Diversity, and Design. Osbourn, A., Goss, R. & Carter, G. T. (eds.). Wiley-Blackwell, p. 147-158 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary Metabolism
Actinobacteria
Multigene Family
Drug Discovery
Microbiology

Metagenomic Analysis of Bile Salt Hydrolases in the Human Gut Microbiome

Jones, B. V. & Gahan, C. G. M., 15 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mobile Metagenome

Jones, B. V., 16 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-15 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Molecular Biology of the Cell

Slack, J., 2014, Principles of Tissue Engineering. Lanza, R., Langer, R. & Vacanti, J. P. (eds.). 4th Edition ed. Elsevier Academic Press Inc, p. 127-145 18 p. Chapter 7

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Biology
Gene Expression
Cytoskeleton
Actin Cytoskeleton
Cell Adhesion
3 Citations (Scopus)

Neural Crest Cells and Pigmentation

Lapedriza, A., Petratou, K. & Kelsh, R. N., 2014, Neural Crest Cells: Evolution, Development and Disease. Trainor, P. (ed.). 1st ed. Boston, U. S. A.: Elsevier Academic Press Inc, p. 287-311

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Data and Palaeontology

Mounce, R., 19 Dec 2014, Issues in Open Research Data. Moore, S. A. (ed.). London: Ubiquity Press, p. 151 164 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

science

Plasmid Capture from Metagenomes

Jones, B. V., 15 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Practical aspects on the use of kinetic isotope effects as probes of flavoprotein enzyme mechanisms

Pudney, C. R., Hay, S. & Scrutton, N. S., 2014, Flavins and Flavoproteins. Weber, S. & Schleicher, E. (eds.). New York: Humana Press, p. 161-175 15 p. (Methods in Molecular Biology; vol. 1146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Flavoproteins
Isotopes
Kinetics
Enzymes
Coenzymes

The Candida albicans Hsp90 Chaperone Network is Environmentally Flexible and Evolutionarily Divergent

Diezmann, S., 2014, The Molecular Chaperones Interaction Networks in Protein Folding and Degradation. Houry, W. (ed.). Springer, p. 185-206

Research output: Chapter in Book/Report/Conference proceedingChapter

HSP90 Heat-Shock Proteins
Candida albicans
Virulence
Fungal Drug Resistance
Molecular Chaperones

Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens

Castillo-Ramirez, S. & Feil, E. J., 26 Nov 2014, Molecular Medical Microbiology. Tang, Y-W., Sussman, M., Liu, D., Poxton, I. & Schwartzman, J. (eds.). Second ed. Elsevier, Vol. 1. p. 337-345 9 p. Chapter 18

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial Genomes
Metagenomics
Epidemiology
Population Genetics
Pathogens
2013
3 Citations (Scopus)

Agroinfiltration of Nicotiana benthamiana leaves for co-localization of regulatory proteins involved in jasmonate signaling

Cevik, V. & Kazan, K., Apr 2013, Jasmonate Signaling: Methods and Protocols, Part III. Goossens, A. & Pauwels, L. (eds.). Humana Press, p. 199-208 10 p. (Methods in Molecular Biology : Methods and Protocols; vol. 1011).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tobacco
Proteins
jasmonic acid
Plant Growth Regulators

Ganoderma basal stem rot, Fusarium vascular wilt and fatal yellowing as major diseases of oil palms: lessons and strategies for understanding and controlling fungal forest pathogens

Cooper, R. M., 2013, Patologia Florestal: Desafios E Perspectivas . Santos, B. A. S. (ed.). Lavras, Brazil: UFLA – Universidade Federal de Lavras, p. 181-202

Research output: Chapter in Book/Report/Conference proceedingChapter

How cells change their phenotype

Tosh, D. & Horb, M. E., 4 Nov 2013, Essentials of Stem Cell Biology (3rd ed.). Lanza, R. & Atala, A. (eds.). San Diego, U. S. A.: Elsevier, p. 107-117 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phenotype
Stem Cells
Research
Direction compound

J coupling

Bagby, S., 2013, Encyclopedia of Biophysics. Roberts, G. C. K. (ed.). Springer

Research output: Chapter in Book/Report/Conference proceedingChapter

nuclear spin
chemical bonds
electron spin
scalars
nuclei
5 Citations (Scopus)

Live imaging, identifying and tracking single cells in complex populations in vivo and ex vivo

Kang, M., Xenopoulos, P., Munoz-Descalzo, S., Lou, X. & Hadjantonakis, A-K., 2013, Imaging and Tracking Stem Cells: Methods and Protocols. Turksen, K. (ed.). Humana Press, p. 109-123 (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Potential neuroprotective actions of dietary flavonoids

Vazour, D., Rattray, M., Williams, R. J. & Spencer, J., 1 Jan 2013, Handbook of Natural Products: Natural Products. Ramawat, K. G. & Merillion, J-M. (eds.). Springer, p. 2617-2640

Research output: Chapter in Book/Report/Conference proceedingChapter

Flavonoids
Action Potentials
Neuronal Plasticity
Brain
Aptitude
1 Citation (Scopus)

Real-time content-aware texturing for deformable surfaces

Koniaris, C., Cosker, D., Yang, X., Mitchell, K. & Matthews, I., 1 Jan 2013, ACM International Conference Proceeding Series.

Research output: Chapter in Book/Report/Conference proceedingChapter

Texturing
Animation
Textures
Nonlinear distortion
Parameterization
5 Citations (Scopus)

Seed Development in Interploidy Hybrids

Scott, R. J., Tratt, J. & Bolbol, A., 4 Apr 2013, Polyploid and Hybrid Genomics. Chen, Z. J. & Birchler, J. A. (eds.). Oxford, UK: Wiley, p. 271-290 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

seed development
hybridization
imprinting behavior
endosperm
Arabidopsis thaliana
23 Citations (Scopus)

Staphylococcus epidermidis in biomaterial-associated infections

Mack, D., Davies, A. P., Harris, L. G., Jeeves, R., Pascoe, B., Knobloch, J. K. M., Rohde, H. & Wilkinson, T. S., 1 Nov 2013, Biomaterials Associated Infection: Immunological Aspects and Antimicrobial Strategies. Moriarty, F. & Zaat, S. A. J. (eds.). New York, U. S. A.: Springer New York, p. 25-56 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Staphylococcus epidermidis
Biocompatible Materials
Infection
Biofilms
Equipment and Supplies