Department of Biology & Biochemistry

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2019

An In Vitro Bladder Model for Studying Catheter- Associated Urinary Tract Infection and Associated Analysis of Biofilms

Nzakizwanayo, J., Pelling, H., Milo, S. & Jones, B., 16 Jul 2019, Proteus mirabilis - Methods and Protocols. Pearson, M. (ed.). Springer Nature, p. 139-158 20 p. (Methods in Molecular Biology; vol. 2021).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cyclizing Disulfide-Rich Peptides Using Sortase A

Agwa, A. J., Craik, D. J. & Schroeder, C. I., 30 Jun 2019, Enzyme-Mediated Ligation Methods. Schmidt, M. & Nuijens, T. (eds.). New York: Springer, Vol. 2012. p. 29-41 13 p. (Methods in Molecular Biology; vol. 2012).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Evidence for the Success of a Quantitative Assessment Instrument for Teaching Evolution in Primary Schools in England

Buchan, L., Hejmadi, M. & Hurst, L., 2019, Evolution Education Re-considered. Harms, U. & Reiss, M. (eds.). UK: Springer, p. 21-40 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence-activated Cell Sorting and NanoString profiling of Single Neural Crest Cells and Pigment Cells

Subkhankulova, T. & Kelsh, R. N., 2019, Methods Relevant to Neural Crest Research. Schwartz, Q. & Wizniak, S. (eds.). Springer, Vol. 1976. p. 185-193 9 p. (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Live imaging of neural crest and pigment cells and transient transgenic manipulation of gene activity

Ballim, R., Nagao, Y. & Kelsh, R. N., 2019, Neural Crest Cells. Schwartz, Q. & Wizniak, S. (eds.). Springer, Vol. 1976. p. 195-206 12 p. (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neural Crest Methodologies in Zebrafish and Medaka

Petratou, K., Camargo Sosa, K., Al Jabri, R., Nagao, Y. & Kelsh, R. N., 2019, Methods relevant to Neural Crest Research. Schwartz, Q. & Wizniak, S. (eds.). Springer, Vol. 1976. p. 167-184 18 p. (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Analysis of Protein Glycation Using Phenylboronate Acrylamide Gel Electrophoresis

Pereira Morais, M., Munir, O. K., Flower, S., Williams, R. J., James, T. & Van Den Elsen, J., 14 Nov 2018, Electrophoretic Separation of Proteins: Methods and Protocols. T. Kurien, B. & Hal Scofield, R. (eds.). New York, U. S. A.: Humana Press, p. 161-175 (Methods in Molecular Biology; vol. 1855).

Research output: Chapter in Book/Report/Conference proceedingChapter

Imaging “Hot-Wired” clathrin-mediated endocytosis

Wood, L. A. & Royle, S. J., 2018, Methods in Molecular Biology. New York, U. S. A.: Humana Press, p. 83-94 12 p. (Methods in Molecular Biology; vol. 1847).

Research output: Chapter in Book/Report/Conference proceedingChapter

Intracytoplasmic sperm injection (ICSI): applications and insights

Suzuki, T. & Perry, A. C. F., 4 Jan 2018, Intracytoplasmic Sperm Injection. Palermo, G. D. & Sills, E. S. (eds.). Cham, Switzerland: Springer International Publishing, p. 169-181 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Aspects of host-pathogen interactions as applied in breeding for disease resistance against Ganoderma stem rots, Fusarium wilt, and spear/bud rots

Cooper, R., Aug 2017, Oil Palm Breeding, Genetics and Genomics.. Soh, A. C., Mayes, S. & Roberts, J. A. (eds.). CRC Press, p. 106-119 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of Insulin-Activated Rab Proteins in Adipose Cells Using Bio-ATB-GTP Photolabeling Technique

Koumanov, F. & Holman, G. D., 8 Dec 2017, Glucose Transport: Methods and Protocols. Lindkvist-Petersson, K. & Hansen, J. S. (eds.). New York City, USA: Humana Press, p. 137-150 14 p. (Methods in Molecular Biology; vol. 1713).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metals and Prions: Twenty years of mining the awe

Brown, D., 28 Apr 2017, Biometals in Neurodegenerative Diseases: Mechanisms and Therapeutics. White, A. R., Aschner, M., Costa, L. G. & Bush, A. I. (eds.). London, U. K.: Elsevier Academic Press Inc, p. 95-115

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein dynamics revealed by CPMG dispersion

Ishima, R. & Bagby, S., Jul 2017, Modern Magnetic Resonance, 2nd edition. Webb, G. (ed.). 9783319283876: Springer, p. 435-452

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

The Evolution and Dynamics of Methicillin-Resistant Staphylococcus aureus

Abdelbary, M. M. H., Basset, P., Blanc, D. S. & Feil, E. J., 8 Feb 2017, Genetics and Evolution of Infectious Diseases (2nd Ed.). Tibayrenc, M. (ed.). Elsevier, p. 553-572 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Use of hexose photolabels to reveal the structure and function of glucose transporters

Holman, G. D., 2017, Photoaffinity labeling for structural probing within protein. Springer Japan, Vol. 978-4-431-56569-7. p. 183-196 14 p. 9

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Application of a Bacillus subtilis whole-cell biosensor (PliaI-lux) for the identification of cell wall active antibacterial compounds

Kobras, C. M., Mascher, T. & Gebhard, S., 22 Nov 2016, Antibiotics: Methods and Protocols. Sass, P. (ed.). New York. U. S. A.: Springer Verlag, p. 121-131 7. (Methods in Molecular Biology; vol. 1520).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Beyond a simple effect: Variable and changing responses to anthropogenic noise

Radford, A. N., Purser, J., Bruintjes, R., Voellmy, I. K., Everley, K. A., Wale, M. A., Holles, S. & Simpson, S. D., 2016, Advances in Experimental Medicine and Biology. Springer New York, Vol. 875. p. 901-907 7 p. (Advances in Experimental Medicine and Biology; vol. 875).

Research output: Chapter in Book/Report/Conference proceedingChapter

10 Citations (Scopus)

Design and performance of bacteria-based self-healing Concrete

Paine, K., Alazhari, M., Sharma, T., Cooper, R. & Heath, A., Jul 2016, The 9th International Concrete Conference 2016: Environment, Efficiency and Economic Challenges for Concrete. Jones, M. R., Newlands, M. D., Halliday, J. E., Csetenyi, L. J., Zheng, L., McCarthy, M. J. & Dyer, T. D. (eds.). Dundee, p. 545-554

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
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200 Downloads (Pure)

DNA, RNA, protein; Mendelian genetics; Population genetics; Epigenetics; Genomics and other 'omics; Bill Hamilton; and, Cancer

Taylor, T., 8 Sep 2016, 30-Second Biology: The 50 Most Thought-Provoking Theories of Life, Each Explained in Half a Minute. Battey, N. & Fellowes, M. (eds.). Lewes, U. K.: Ivy Press, p. 36-47 & 84 12 p. (30 Second Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

Functional and Genetic Analysis of Plectin in Skin and Muscle

Rezniczek, G. A., Winter, L., Walko, G. & Wiche, G., 2016, Methods in Enzymology. Elsevier Academic Press Inc, Vol. 569. p. 235-259 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

How can we remove barriers to increased usage of indigenous crops?

Sanders, H. L., Hollington, P. A., Pasquini, M. W. & Carpena, P. C., 1 May 2016, Proceedings of the International Symposium on Indigenous Vegetables (ActaHorticulturae). Wang, J. F. & Mecozzi, M. (eds.). International Society for Horticultural Science, p. 127-134 8 p. (Acta Horticulturae; vol. 1102).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mapping long noncoding RNA chromatin occupancy using capture hybridization analysis of RNA targets (CHART)

Vance, K. W., 24 Sep 2016, Enhancer RNAs: Methods and Protocols. Andersson Orom, U. (ed.). New York, U. S. A.: Springer, p. 39-50 12 p. (Methods in Molecular Biology; vol. 1468).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Probing Chromosome Dynamics in Bacillus subtilis

Koh, A. & Murray, H., 10 Jun 2016, Chromosome Architecture. Leake, M. (ed.). New York, USA: Humana Press, p. 91-108 18 p. (Methods in Molecular Biology; vol. 1431).

Research output: Chapter in Book/Report/Conference proceedingChapter

Turning one cell type into another

Slack, J. M. W., 7 Jan 2016, Current Topics in Developmental Biology. Wassarman, P. M. (ed.). Elsevier, Vol. 117. p. 339-358

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Visualizing and quantitating the spatiotemporal regulation of Ras/ERK signaling by dual-specificity mitogen-activated protein phosphatases (MKPs)

Caunt, C. J., Kidger, A. M. & Keyse, S. M., 12 Aug 2016, Protein Tyrosine Phosphatases: Methods and Protocols. Pulido, R. (ed.). Springer, p. 197-215 19 p. (Methods in Molecular Biology; vol. 1447).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
3 Citations (Scopus)
112 Downloads (Pure)
2015

Analysis of DNA methylation patterns in single blastocysts by Pyrosequencing(®).

Huntriss, J., Woodfine, K., Huddleston, J. E., Murrell, A. & Picton, H. M., 2015, Pyrosequencing: Methods and Protocols - Part III. Lehmann, U. & Tost, J. (eds.). New York, U. S. A.: Springer, p. 259-270 (Methods in Molecular Biology; vol. 1315).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Epigenetics and disease

Murrell, A., Nov 2015, Epigenetics for Drug Discovery. Carey, N. (ed.). Abingdon, U. K.: Royal Society of Chemistry, p. 47-67 21 p. (RSC Drug Discovery Series; vol. January 2016, no. 48).

Research output: Chapter in Book/Report/Conference proceedingChapter

Secreted biomolecules in fungal plant pathogenesis

Brown, N. A. & Hammond-Kosack, K. E., 30 Jan 2015, Fungal Biomolecules: Sources, Applications and Recent Developments. Kumar Gupta, V., Mach, R. L. & Sreenivasaprasad, S. (eds.). Chichester, U. K.: Wiley, p. 263-310 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Citations (Scopus)

The potential role of bacteriophages in shaping plant-bacterial interactions

Koskella, B. & Taylor, T. B., Mar 2015, Bacteria-Plant Interactions: Advanced Research and Future Trends. Murillo, J., Vinatzer, B. A., Jackson, R. W. & Arnold, D. L. (eds.). Poole. U. K.: Caister Academic Press, p. 199-220

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Does Biofilm Formation Aid Colonization and Infection in Campylobacter?

Pascoe, B., Lappin-Scott, H., Asakura, H. & Sheppard, S., 1 Apr 2014, Campylobacter Ecology and Evolution. Sheppard, S. & Meric, G. (eds.). Norwich, UK: Caister Academic Press, p. 177-188

Research output: Chapter in Book/Report/Conference proceedingChapter

Enzyme biotransformations and reactors

Emanuelsson, E. A. C. & Leak, D., 16 Dec 2014, Chemical Processes for a Sustainable Future. Letcher, T., Scott, J. & Patterson, D. (eds.). Royal Society of Chemistry

Research output: Chapter in Book/Report/Conference proceedingChapter

Fungal-Actinomycete Interactions - Wakening of Silent Fungal Secondary Metabolism Gene Clusters via Interorganismic Interactions

Schroeckh, V., Nützmann, H. W. & Brakhage, A. A., 5 May 2014, Natural Products: Discourse, Diversity, and Design. Osbourn, A., Goss, R. & Carter, G. T. (eds.). Wiley-Blackwell, p. 147-158 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Genotype-by-Environment Interactions when the Social Environment Contains Genes

Wolf, J. B., Royle, N. J. & Hunt, J., 20 Oct 2014, Genotype-by-Environment Interactions and Sexual Selection. Wiley-Blackwell Publishing Ltd, p. 63-97 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

Metagenomic Analysis of Bile Salt Hydrolases in the Human Gut Microbiome

Jones, B. V. & Gahan, C. G. M., 15 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mobile Metagenome

Jones, B. V., 16 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-15 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Biology of the Cell

Slack, J., 2014, Principles of Tissue Engineering. Lanza, R., Langer, R. & Vacanti, J. P. (eds.). 4th Edition ed. Elsevier Academic Press Inc, p. 127-145 18 p. Chapter 7

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Neural Crest Cells and Pigmentation

Lapedriza, A., Petratou, K. & Kelsh, R. N., 2014, Neural Crest Cells: Evolution, Development and Disease. Trainor, P. (ed.). 1st ed. Boston, U. S. A.: Elsevier Academic Press Inc, p. 287-311

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Open Data and Palaeontology

Mounce, R., 19 Dec 2014, Issues in Open Research Data. Moore, S. A. (ed.). London: Ubiquity Press, p. 151 164 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plasmid Capture from Metagenomes

Jones, B. V., 15 Apr 2014, Encyclopedia of Metagenomics. Nelson, K. E. (ed.). New York, NY: Springer New York, p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Practical aspects on the use of kinetic isotope effects as probes of flavoprotein enzyme mechanisms

Pudney, C. R., Hay, S. & Scrutton, N. S., 2014, Flavins and Flavoproteins. Weber, S. & Schleicher, E. (eds.). New York: Humana Press, p. 161-175 15 p. (Methods in Molecular Biology; vol. 1146).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

The Candida albicans Hsp90 Chaperone Network is Environmentally Flexible and Evolutionarily Divergent

Diezmann, S., 2014, The Molecular Chaperones Interaction Networks in Protein Folding and Degradation. Houry, W. (ed.). Springer, p. 185-206

Research output: Chapter in Book/Report/Conference proceedingChapter

Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens

Castillo-Ramirez, S. & Feil, E. J., 26 Nov 2014, Molecular Medical Microbiology. Tang, Y-W., Sussman, M., Liu, D., Poxton, I. & Schwartzman, J. (eds.). Second ed. Elsevier, Vol. 1. p. 337-345 9 p. Chapter 18

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Agroinfiltration of Nicotiana benthamiana leaves for co-localization of regulatory proteins involved in jasmonate signaling

Cevik, V. & Kazan, K., Apr 2013, Jasmonate Signaling: Methods and Protocols, Part III. Goossens, A. & Pauwels, L. (eds.). Humana Press, p. 199-208 10 p. (Methods in Molecular Biology : Methods and Protocols; vol. 1011).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Ganoderma basal stem rot, Fusarium vascular wilt and fatal yellowing as major diseases of oil palms: lessons and strategies for understanding and controlling fungal forest pathogens

Cooper, R. M., 2013, Patologia Florestal: Desafios E Perspectivas . Santos, B. A. S. (ed.). Lavras, Brazil: UFLA – Universidade Federal de Lavras, p. 181-202

Research output: Chapter in Book/Report/Conference proceedingChapter

How cells change their phenotype

Tosh, D. & Horb, M. E., 4 Nov 2013, Essentials of Stem Cell Biology (3rd ed.). Lanza, R. & Atala, A. (eds.). San Diego, U. S. A.: Elsevier, p. 107-117 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

J coupling

Bagby, S., 2013, Encyclopedia of Biophysics. Roberts, G. C. K. (ed.). Springer

Research output: Chapter in Book/Report/Conference proceedingChapter

Live imaging, identifying and tracking single cells in complex populations in vivo and ex vivo

Kang, M., Xenopoulos, P., Munoz-Descalzo, S., Lou, X. & Hadjantonakis, A-K., 2013, Imaging and Tracking Stem Cells: Methods and Protocols. Turksen, K. (ed.). Humana Press, p. 109-123 (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Potential neuroprotective actions of dietary flavonoids

Vazour, D., Rattray, M., Williams, R. J. & Spencer, J., 1 Jan 2013, Handbook of Natural Products: Natural Products. Ramawat, K. G. & Merillion, J-M. (eds.). Springer, p. 2617-2640

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Real-time content-aware texturing for deformable surfaces

Koniaris, C., Cosker, D., Yang, X., Mitchell, K. & Matthews, I., 6 Nov 2013, ACM International Conference Proceeding Series. 10 p. 11

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Seed Development in Interploidy Hybrids

Scott, R. J., Tratt, J. & Bolbol, A., 4 Apr 2013, Polyploid and Hybrid Genomics. Chen, Z. J. & Birchler, J. A. (eds.). Oxford, UK: Wiley, p. 271-290 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)