Department of Biology & Biochemistry

Research Output

2018

Mixed evidence for early bursts of morphological evolution in extant clades

Puttick, M. N., 1 Apr 2018, In : Journal of Evolutionary Biology. 31, 4, p. 502-515 14 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Model Senescent Microglia Induce Disease Related Changes in Alpha-synuclein Expression and Activity

Angelova, D. & Brown, D., 1 Aug 2018, In : Biomolecules. 8, 3, p. 1-25 25 p., 67.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
Open Access
7 Citations (Scopus)

Molecular Basis for Multiple Omapatrilat Binding Sites within the ACE C-Domain: Implications for Drug Design.

Cozier, G., Arendse, L. B., Schwager, S. L., Sturrock, E. D. & Acharya, K-R., 21 Nov 2018, In : Journal of Medicinal Chemistry. 61, 22, p. 10141-10154 14 p.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Molecular epidemiology and comparative genomics of Campylobacter concisus strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease

Kirk, K. F., Méric, G., Nielsen, H. L., Pascoe, B., Sheppard, S. K., Thorlacius-Ussing, O. & Nielsen, H., 30 Jan 2018, In : Scientific Reports. 8, 1, 1902.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Multifaceted impacts of bacteriophages in the plant microbiome

Koskella, B. & Taylor, T. B., 25 Aug 2018, In : Annual Review of Phytopathology. 56, p. 361-380 20 p.

Research output: Contribution to journalReview article

6 Citations (Scopus)

Native RNA-Sequencing Throws its Hat into the Transcriptomics Ring

Hussain, S., 1 Apr 2018, In : Trends in Biochemical Sciences. 43, 4, p. 225-227 3 p.

Research output: Contribution to journalReview article

Open Access
File
4 Citations (Scopus)
26 Downloads (Pure)

Next generation in vitro liver model design: Combining a permeable polystyrene membrane with a transdifferentiated cell line

Luetchford, K. A., Wung, N., Argyle, I. S., Storm, M. P., Weston, S. D., Tosh, D. & Ellis, M. J., 1 Nov 2018, In : Journal of Membrane Science. 565, p. 425-438 14 p.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Nicotinic acetylcholine receptors

Wonnacott, S., Bermudez, I. & Millar, N., 1 Jun 2018, In : British Journal of Pharmacology. 175, 11, p. 1785-1788 4 p.

Research output: Contribution to journalEditorial

4 Citations (Scopus)

Nicotinic Acetylcholine Receptors Control Encoding and Retrieval of Associative Recognition Memory through Plasticity in the Medial Prefrontal Cortex

Sabec, M. H., Wonnacott, S., Warburton, E. C. & Bashir, Z. I., 27 Mar 2018, In : Cell Reports. 22, 13, p. 3409-3415 7 p.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Over-expressed, N-terminally truncated BRAF is detected in the nucleus of cells with nuclear phosphorylated MEK and ERK

Hey, F., Andreadi, C., Noble, C., Patel, B., Jin, H., Kamata, T., Straatman, K., Luo, J., Balmanno, K., Jones, D. T. W., Collins, V. P., Cook, S. J., Caunt, C. J. & Pritchard, C., 20 Dec 2018, In : Heliyon. 4, 12, e01065.

Research output: Contribution to journalArticle

Open Access

Pair correlation functions for identifying spatial correlation in discrete domains

Gavagnin, E., Owen, J. & Yates, C., 4 Jun 2018, In : Physical Review E. 97, 6, 062104.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
33 Downloads (Pure)

Parasitos gastrointestinais e externos da coruja-orelhuda Bubo magellanicus (Strigiformes: Strigidae) do Chile

Translated title of the contribution: Gastrointestinal and external parasitism in the Magellanic Horned Owl Bubo magellanicus (Strigiformes: Strigidae) in ChileGrandón-Ojeda, A., Valdebenito, J. O., Moreno, L., Kinsella, J. M., Mironov, S., Cicchino, A., Barrientos, C. & Gonzá-Acuñalez, D., 1 Jun 2018, In : Revista Brasileira de Parasitologia Veterinaria. 27, 2, p. 161-168 8 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Parsimony, not Bayesian analysis, recovers more stratigraphically congruent phylogenetic trees

Sansom, R. S., Choate, P. G., Keating, J. N. & Randle, E., Jun 2018, In : Biology Letters. 14, 6, p. 1-4 4 p., 20180263.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Personality assortative female mating preferences in a songbird

Pogány, Á., Vincze, E., Szurovecz, Z., Kosztolányi, A., Barta, Z., Székely, T. & Riebel, K., 2018, In : Behaviour. 155, 6, p. 481-503 23 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter

Aidley, J., Wanford, J. J., Green, L. R., Sheppard, S. K. & Bayliss, C. D., 1 Nov 2018, In : Microbial Genomics. 4, 11

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005–2016

Cowley, L., Oresegun, D. R., Chattaway, M. A., Dallman, T. J. & Jenkins, C., 1 Jun 2018, In : Journal of Medical Microbiology. 67, 6, p. 884-888 5 p., 000739.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Phylogeny of Vibrio vulnificus from the analysis of the core-genome: Implications for intra-species taxonomy

Roig, F. J., González-Candelas, F., Sanjuán, E., Fouz, B., Feil, E. J., Llorens, C., Baker-Austin, C., Oliver, J. D., Danin-Poleg, Y., Gibas, C. J., Kashi, Y., Gulig, P. A., Morrison, S. S. & Amaro, C., 5 Jan 2018, In : Frontiers in Microbiology. 8, p. 1-13 13 p., 2613.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria.

Thorpe, H., Bayliss, S., Sheppard, S. & Feil, E., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-11 11 p., giy015.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells

Pavlaki, I., Docquier, F., Chernukhin, I., Kita, G., Gretton, S., Clarkson, C. T., Teif, V. B. & Klenova, E., 1 Aug 2018, In : BBA - Gene Regulatory Mechanisms. 1861, 8, p. 718-730 13 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Population genomics of bacterial host adaptation

Sheppard, S. K., Guttman, D. S. & Fitzgerald, J. R., 4 Jul 2018, In : Nature Reviews Genetics. 19, p. 549-565 17 p.

Research output: Contribution to journalReview article

23 Citations (Scopus)

Postsynaptic p47phox regulates long-term depression in the hippocampus

Yi, J. H., Kim, D. H., Piers, T. M., Kim, S. C., Whitcomb, D. J., Regan, P. & Cho, K., 28 Aug 2018, In : Cell discovery. 4, 44.

Research output: Contribution to journalArticle

Open Access

Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data

O'Reilly, J. E., Puttick, M. N., Pisani, D. & Donoghue, P. C. J., 1 Jan 2018, In : Palaeontology. 61, 1, p. 105-118 14 p.

Research output: Contribution to journalArticle

Open Access
23 Citations (Scopus)

RADpainter and fineRADstructure: Population Inference from RADseq Data

Malinsky, M., Trucchi, E., Lawson, D. J. & Falush, D., 1 May 2018, In : Molecular Biology and Evolution. 35, 5, p. 1284-1290 7 p.

Research output: Contribution to journalArticle

Open Access
46 Citations (Scopus)
Open Access
4 Citations (Scopus)

Report on beak abnormalities of some birds of Patagonia

Valdebenito, J. O., Grandón-Ojeda, A., Pantoja-Maggi, V., Novoa, F. J. & González-Acuña, D., 1 Dec 2018, In : The Wilson Journal of Ornithology. 130, 4, p. 1014-1019 6 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Resolution of habitat-associated ecogenomic signatures in bacteriophage genomes and application to microbial source tracking

Ogilvie, L. A., Nzakizwanayo, J., Guppy, F. M., Dedi, C., Diston, D., Taylor, H., Ebdon, J. & Jones, B. V., 30 Apr 2018, In : ISME Journal. 12, 4, p. 942-958 17 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
Open Access

Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing

Ring, N., Abrahams, J. S., Jain, M., Olsen, H., Preston, A. & Bagby, S., 28 Nov 2018, In : Microbial Genomics. 4, 11, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
Open Access
6 Citations (Scopus)

RNAi as an emerging approach to control Fusarium head blight disease and mycotoxin contamination in cereals

Machado, A. K., Brown, N. A., Urban, M., Kanyuka, K. & Hammond-Kosack, K. E., 1 Apr 2018, In : Pest Management Science. 74, 4, p. 790-799 10 p.

Research output: Contribution to journalReview article

Open Access
27 Citations (Scopus)

Ruminant and chicken: Important sources of campylobacteriosis in France despite a variation of source attribution in 2009 and 2015

Thépault, A., Rose, V., Quesne, S., Poezevara, T., Béven, V., Hirchaud, E., Touzain, F., Lucas, P., Méric, G., Mageiros, L., Sheppard, S. K., Chemaly, M. & Rivoal, K., 18 Jun 2018, In : Scientific Reports. 8, 1, p. 1-10 10 p., 9305.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Salmon farms are in crisis – here’s how scientists are trying to save them

Christie, L., 11 Apr 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

Scientific aptitude better explains poor responses to teaching of evolution than psychological conflicts

Mead, R., Hejmadi, M. & Hurst, L. D., 1 Feb 2018, In : Nature Ecology & Evolution. 2, 2, p. 388-394 7 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
101 Downloads (Pure)

Sharing mutants and experimental information prepublication using FgMutantDb (https//scabusa.org/FgMutantDb)

Baldwin, T. T., Basenko, E., Harb, O., Brown, N. A., Urban, M., Hammond-Kosack, K. E. & Bregitzer, P. P., 1 Jun 2018, In : Fungal Genetics and Biology. 115, p. 90-93 4 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Short Leucine-Rich Proteoglycans Modulate Complement Activity and Increase Killing of the Respiratory Pathogen Moraxella catarrhalis

Laabei, M., Liu, G., Ermert, D., Lambris, J. D., Riesbeck, K. & Blom, A. M., 1 Nov 2018, In : The Journal of Immunology. 201, 9, p. 2721-2730 10 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
31 Downloads (Pure)

Silicon Valley’s quest for immortality – and its worrying sacrifices

Horton, J. & Priest, N., 10 Dec 2018, The Conversation, 101405.

Research output: Contribution to specialist publicationArticle

Social interactions predict genetic diversification: An experimental manipulation in shorebirds

Cunningham, C., Parra, J. E., Coals, L., Beltrán, M., Zefania, S. & Székely, T., 1 May 2018, In : Behavioral Ecology. 29, 3, p. 609-618 10 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Spatiotemporal regulation of liver development by the Wnt/β-catenin pathway

Burke, Z. D., Reed, K. R., Yeh, S-W., Meniel, V., Sansom, O. J., Clarke, A. R. & Tosh, D., 9 Feb 2018, In : Scientific Reports. 8, 1, p. 1-9 9 p., 2735.

Research output: Contribution to journalArticle

Open Access

Strategic investment explains patterns of cooperation and cheating in a microbe

Madgwick, P. G., Stewart, B., Belcher, L. J., Thompson, C. R. L. & Wolf, J. B., 22 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 21, p. E4823-E4832 10 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
38 Downloads (Pure)

Structural insights of RmXyn10A - A prebiotic-producing GH10 xylanase with a non-conserved aglycone binding region

Aronsson, A., Guler, F., Petoukhov, M., Crennell, S., Svergun, D., Linares-Pasten, J. & Nordbery Karlsson, E., 1 Feb 2018, In : Biochimica Et Biophysica Acta-Proteins and Proteomics. 1866, 2, p. 292-306 15 p.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Successful conservation of global waterbird populations depends on effective governance

Amano, T., Székely, T., Sandel, B., Nagy, S., Mundkur, T., Langendoen, T., Blanco, D., Soykan, C. U. & Sutherland, W. J., 11 Jan 2018, In : Nature. 553, 7687, p. 199-202 4 p.

Research output: Contribution to journalLetter

Open Access
File
37 Citations (Scopus)
71 Downloads (Pure)

Switchable genome editing via genetic code expansion

Suzuki, T., Asami, M., Patel, S. G., Luk, L. Y. P. L., Tsai, Y-H. & Perry, A., 3 Jul 2018, In : Scientific Reports. 8, 1, p. 1-12 12 p., 10051.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Temperature fluctuations during development reduce male fitness and may limit adaptive potential in tropical rainforest Drosophila

Saxon, A. D., O'Brien, E. K. & Bridle, J. R., 6 Mar 2018, In : Journal of Evolutionary Biology. 31, 3, p. 405-415 11 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias

Liu, H., Huang, J., Sun, X., Li, J., Hu, Y., Yu, L., Liti, G., Tian, D., Hurst, L. & Yang, S., 1 Jan 2018, In : Nature Ecology & Evolution. 2, 1, p. 164-173 10 p.

Research output: Contribution to journalArticle

Open Access
File
13 Citations (Scopus)
41 Downloads (Pure)

The additive free microwave hydrolysis of lignocellulosic biomass for fermentation to high value products

Fan, J., Santomauro, F., Budarin, V. L., Whiffin, F., Abeln, F., Chantasuban, T., Gore-Lloyd, D., Henk, D., Scott, R. J., Clark, J. & Chuck, C. J., 10 Oct 2018, In : Journal of Cleaner Production. 198, p. 776-784 9 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
23 Downloads (Pure)
Open Access
6 Citations (Scopus)

The Design and Development of a Potent and Selective Novel Diprolyl Derivative That Binds to the N-Domain of Angiotensin-I Converting Enzyme

Fienberg, S., Cozier, G. E., Acharya, K. R., Chibale, K. & Sturrock, E. D., 11 Jan 2018, In : Journal of Medicinal Chemistry. 61, 1, p. 344-359 16 p.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
14 Downloads (Pure)

The distribution of bacterial doubling times in the wild

Gibson, B., Wilson, D. J., Feil, E. & Eyre-Walker, A., 30 Jun 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1880, p. 1-9 9 p., 20180789.

Research output: Contribution to journalArticle

Open Access
18 Citations (Scopus)