Department of Biology & Biochemistry

Research Output

2018

Epistasis analysis uncovers hidden antibiotic resistance-associated fitness costs hampering the evolution of MRSA

Yokoyama, M., Stevens, E., Laabei, M., Bacon, L., Heesom, K., Bayliss, S., Ooi, N., O'Neill, A. J., Murray, E., Williams, P., Lubben, A., Reeksting, S., Meric, G., Pascoe, B., Sheppard, S. K., Recker, M., Hurst, L. D. & Massey, R. C., 18 Jul 2018, In : Genome Biology. 19, 1, p. 1-12 12 p., 94.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Evidence for an effect of landscape connectivity on Borrelia burgdorferi sensu stricto dispersion in a zone of range expansion

Mechai, S., Margos, G., Feil, E. J., Lindsay, L. R., Michel, P., Kotchi, S. O. & Ogden, N. H., 1 Sep 2018, In : Ticks and Tick-Borne Diseases. 9, 6, p. 1407-1415 9 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Evolution of jaw disparity in fishes

Hill, J. J., Puttick, M. N., Stubbs, T. L., Rayfield, E. J. & Donoghue, P. C. J., 1 Nov 2018, In : Palaeontology. 61, 6, p. 847-854 8 p.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Evolution via recombination: Cell-to-cell contact facilitates larger recombination events in Streptococcus pneumoniae

Cowley, L., Petersen, F. C., Junges, R., Jimenez, M. J. D., Morrison, D. A. & Hanage, W. P., 30 Jun 2018, In : Plos Genetics. 14, 6, p. 1-23 23 p., e1007410.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Exonic splice regulation imposes strong selection at synonymous sites

Savisaar, R. & Hurst, L., 1 Oct 2018, In : Genome Research. 28, 10, p. 1442-1454 13 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Experimental design and analysis and their reporting II: updated and simplified guidance for authors and peer reviewers

Curtis, M. J., Alexander, S., Cirino, G., Docherty, J. R., George, C. H., Giembycz, M. A., Hoyer, D., Insel, P. A., Izzo, A. A., Ji, Y., MacEwan, D. J., Sobey, C. G., Stanford, S. C., Teixeira, M. M., Wonnacott, S. & Ahluwalia, A., 1 Apr 2018, In : British Journal of Pharmacology. 175, 7, p. 987-993 7 p.

Research output: Contribution to journalEditorial

337 Citations (Scopus)

Exploring the electrochemical performance of graphite and graphene paste electrodes composed of varying lateral flake sizes

Slate, A. J., Brownson, D. A. C., Abo Dena, A. S., Smith, G. C., Whitehead, K. A. & Banks, C. E., 14 Aug 2018, In : Physical Chemistry Chemical Physics. 20, 30, p. 20010-20022 13 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Expression of SALL4 in prostate cancer

Chalmers, A. & Alghezi, D., 31 Jul 2018, In : Cancer Research. 78, 13 Supplement, 1 p., 2637.

Research output: Contribution to journalMeeting abstract

Faster Evolving Primate Genes Are More Likely to Duplicate

O'Toole, Á. N., Hurst, L. D. & McLysaght, A., 1 Jan 2018, In : Molecular Biology and Evolution. 35, 1, p. 107-118 12 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Feathered fruit-eater frozen in fossil form

Field, D. & Hsiang, A. Y., 25 Jun 2018, BioMed Central.

Research output: Other contribution

Open Access

Freshwater transitions and symbioses shaped the evolution and extant diversity of caridean shrimps

Davis, K. E., De Grave, S., Delmer, C. & Wills, M. A., 22 Feb 2018, In : Communications Biology. 1, 1, p. 1-7 7 p., 16.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Fungal G-protein-coupled receptors: mediators of pathogenesis and targets for disease control

Brown, N., Schrevens, S., van Dijck, P. & Goldman, G., 1 Apr 2018, In : Nature Microbiology. 3, p. 402–414 13 p.

Research output: Contribution to journalReview article

Open Access
File
13 Citations (Scopus)
150 Downloads (Pure)

Gastrointestinais e ectoparasitas do saracura-do-banhado, Pardirallus sanguinolentus (Aves: Rallidae) do Chile central

Translated title of the contribution: Gastrointestinal and ectoparasites of plumbeous rail, pardirallus sanguinolentus (Aves: Rallidae) in central ChileValdebenito, J. O., Moreno, L., Barrientos, C., Mironov, S., Kinsella, J., Cicchino, A., Mena, M., Grandón-Ojeda, A. & González-Acuña, D., 6 Sep 2018, In : Revista Brasileira de Parasitologia Veterinaria. 27, 3, p. 301-312 12 p.

Research output: Contribution to journalArticle

Open Access
24 Downloads (Pure)

Gating modifier toxins isolated from spider venom: Modulation of voltage-gated sodium channels and the role of lipid membranes

Agwa, A. J., Peigneur, S., Chow, C. Y., Lawrence, N., Craik, D. J., Tytgat, J., King, G. F., Henriques, S. T. & Schroeder, C. I., 8 Jun 2018, In : Journal of Biological Chemistry. 293, 23, p. 9041-9052 12 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Gene drives accelerate evolution – but we need brakes

Perry, A., 5 Jul 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

Gene exchange drives the ecological success of a multi-host bacterial pathogen

Richardson, E. J., Bacigalupe, R., Harrison, E. M., Weinert, L. A., Lycett, S., Vrieling, M., Robb, K., Hoskisson, P. A., Holden, M. T. G., Feil, E. J., Paterson, G. K., Tong, S. Y. C., Shittu, A., van Wamel, W., Aanensen, D. M., Parkhill, J., Peacock, S. J., Corander, J., Holmes, M. & Fitzgerald, J. R., 1 Sep 2018, In : Nature Ecology and Evolution. 2, 9, p. 1468-1478 11 p.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

Genomic epidemiology of clinical Campylobacter spp. at a single health trust site

Dunn, S. J., Pascoe, B., Turton, J., Fleming, V., Diggle, M., Sheppard, S. K., McNally, A. & Manning, G., 11 Oct 2018, In : Microbial Genomics. 4, 10, p. 1-8 8 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry

Bayliss, S. C., Verner-Jeffreys, D. W., Ryder, D., Suarez, R., Ramirez, R., Romero, J., Pascoe, B., Sheppard, S. K., Godoy, M. & Feil, E. J., 1 Sep 2018, In : Microbial Genomics. 4, 9, 12 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Genomic signature of an avian Lilliput Effect across the K-Pg Extinction

Berv, J. S. & Field, D. J., 31 Jan 2018, In : Systematic Biology. 67, 1, p. 1–13 13 p.

Research output: Contribution to journalArticle

Open Access
File
19 Citations (Scopus)
60 Downloads (Pure)

Global pattern of nest predation is disrupted by climate change in shorebirds

Kubelka, V., Šálek, M., Tomkovich, P., Végvári, Z., Freckleton, R. P. & Székely, T., 9 Nov 2018, In : Science. 362, 6415, p. 680-683 4 p.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
14 Downloads (Pure)

Goals and practicalities of immunoblotting and immunohistochemistry: A guide for submission to the British Journal of Pharmacology

Alexander, S. P. H., Roberts, R. E., Broughton, B. R. S., Sobey, C. G., George, C. H., Stanford, S. C., Cirino, G., Docherty, J. R., Giembycz, M. A., Hoyer, D., Insel, P. A., Izzo, A. A., Ji, Y., MacEwan, D. J., Mangum, J., Wonnacott, S. & Ahluwalia, A., 1 Feb 2018, In : British Journal of Pharmacology. 175, 3, p. 407-411 5 p.

Research output: Contribution to journalEditorial

92 Citations (Scopus)

Hidden diversity of forest birds in Madagascar revealed using integrative taxonomy

Younger, J. L., Strozier, L., Maddox, J. D., Nyári, Á. S., Bonfitto, M. T., Raherilalao, M. J., Goodman, S. M. & Reddy, S., 1 Jul 2018, In : Molecular Phylogenetics and Evolution. 124, p. 16-26 11 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

High resolution crystal structure of substrate-free human neprilysin

Moss, S., Subramanian, V. & Acharya, K. R., 1 Oct 2018, In : Journal of Structural Biology. 204, 1, p. 19-25 7 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
44 Downloads (Pure)

High resolution crystal structures of the receptor-binding domain of Clostridium botulinum neurotoxin serotypes A and FA

Davies, J. R., Hackett, G. S., Liu, S. M. & Acharya, K. R., 21 Mar 2018, In : PeerJ. 6, e4552.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

High resolution whole genome multilocus sequence typing (wgMLST) schemes for Salmonella enterica Weltevreden epidemiologic investigations

Tadee, P., Tadee, P., Hitchings, M. D., Pascoe, B., Sheppard, S. & Patchanee, P., 1 Jun 2018, In : Microbiology and Biotechnology Letters. 46, 2, p. 162-170 9 p.

Research output: Contribution to journalArticle

Open Access

How a DNA mimic catches and cleaves NF-kB

Acharya, K-R. & Cozier, G., 28 Sep 2018, In : Journal of Biological Chemistry. 293, 39, p. 15330-15331 2 p.

Research output: Contribution to journalReview article

Open Access
1 Citation (Scopus)

How birds survived the dinosaur-killing asteroid

Field, D., 24 May 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

Human evolution is still happening – possibly faster than ever

Hurst, L. D., 14 Nov 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
Open Access
File
9 Citations (Scopus)
34 Downloads (Pure)

Imaging “Hot-Wired” clathrin-mediated endocytosis

Wood, L. A. & Royle, S. J., 2018, Methods in Molecular Biology. New York, U. S. A.: Humana Press, p. 83-94 12 p. (Methods in Molecular Biology; vol. 1847).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunogenic compositions comprising Sbi protein and uses thereof

Van Den Elsen, J., Watts, A. & Marchbank, K. J., 31 May 2018, Patent No. PCT/EP2017/080321, 31 May 2018

Research output: Patent

Impact of the Late Triassic mass extinction on functional diversity and composition of marine ecosystems

Dunhill, A. M., Foster, W. J., Sciberras, J. & Twitchett, R. J., 1 Jan 2018, In : Palaeontology. 61, 1, p. 133-148 16 p.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Impairment of Release Site Clearance within the Active Zone by Reduced SCAMP5 Expression Causes Short-Term Depression of Synaptic Release

Park, D., Lee, U., Cho, E., Zhao, H., Kim, J. A., Lee, B. J., Regan, P., Ho, W-K., Cho, K. & Chang, S., 20 Mar 2018, In : Cell Reports. 22, 12, p. 3339-3350 12 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Impulsive choice in mice lacking paternal expression of Grb10 suggests intragenomic conflict in behavior

Dent, C. L., Humby, T., Lewis, K., Ward, A., Fischer-Colbrie, R., Wilkinson, L. S., Wilkins, J. F. & Isles, A. R., 1 May 2018, In : Genetics. 209, 1, p. 233-239 7 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)
Open Access
File
1 Citation (Scopus)
23 Downloads (Pure)

Integrated genomic and fossil evidence illuminates life’s early evolution and eukaryote origin

Betts, H. C., Puttick, M. N., Clark, J. W., Williams, T. A., Donoghue, P. CJ. & Pisani, D., 20 Aug 2018, In : Nature Ecology & Evolution. 2, p. 1556-1562 7 p.

Research output: Contribution to journalArticle

Open Access
File
53 Citations (Scopus)
31 Downloads (Pure)

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

King, R., Brown, N., Urban, M. & Hammond-Kosack, K., 19 Apr 2018, In : BMC Genomics. 19, 1, p. 1-19 19 p., 269.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Intracytoplasmic sperm injection (ICSI): applications and insights

Suzuki, T. & Perry, A. C. F., 4 Jan 2018, Intracytoplasmic Sperm Injection. Palermo, G. D. & Sills, E. S. (eds.). Cham, Switzerland: Springer International Publishing, p. 169-181 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Investigation into the Mechanism of Homo- and Heterodimerization of Angiotensin-Converting Enzyme

Abrie, J. A., Moolman, W. J. A., Cozier, G. E., Schwager, S. L. U., Acharya, K. R. & Sturrock, E. D., 1 Apr 2018, In : Molecular Pharmacology. 93, 4, p. 344-354 11 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Large Scale Application of Self-Healing Concrete: Design, Construction and Testing

Davies, R., Teall, O., Pilegis, M., Kanellopoulos, A., Sharma, T., Jefferson, A., Gardner, D., Al-Tabbaa, A., Paine, K. & Lark, R., 4 Sep 2018, In : Frontiers in Materials. 5, 51.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Late Maastrichtian pterosaurs from North Africa and mass extinction of Pterosauria at the Cretaceous-Paleogene boundary

Longrich, N. R., Martill, D. M. & Andres, B., 30 Apr 2018, In : PLoS Biology. 16, 3, p. 1-38 38 p., e2001663.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)

Levels of α- and β-synuclein regulate cellular susceptibility to toxicity from α-synuclein oligomers

Angelova, D., Jones, H. & Brown, D., 1 Feb 2018, In : FASEB Journal. 32, 2, p. 995-1006 12 p.

Research output: Contribution to journalArticle

File
3 Citations (Scopus)
42 Downloads (Pure)

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group

Méric, G., Mageiros, L., Pascoe, B., Woodcock, D. J., Mourkas, E., Lamble, S., Bowden, R., Jolley, K. A., Raymond, B. & Sheppard, S. K., 1 Apr 2018, In : Molecular Ecology. 27, 7, p. 1524-1540 17 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Medium chain carboxylic acids from COD-rich food waste as sole substrate

De Groof, V., Arnot, T., Lanham, A., Coma, M. & Leak, D., 16 Jul 2018.

Research output: Contribution to conferenceAbstract

Messiah in America: A Drama in Five Acts

Nadir, M. & Shapiro, M. (Translator), Aug 2018, Farlag Press. 134 p.

Research output: Book/ReportBook

Metabolic gene clusters in eukaryotes

Nützmann, H. W., Scazzocchio, C. & Osbourn, A., 23 Nov 2018, In : Annual Review of Genetics. 52, p. 159-183 25 p.

Research output: Contribution to journalReview article

10 Citations (Scopus)

Microencapsulated spores and growth media for self-healing mortars

Paine, K., Horne, I., Tan, L., Sharma, T., Heath, A., Cooper, R., Virgoe, J., Palmer, D. & Kerr, A., 10 Oct 2018, Life-Cycle Analysis and Assessment in Civil Engineering: Towards an Integrated Vision. Caspeele, R., Taerwe, L. & Frangopol, D. M. (eds.). London, U. K.: CRC Press, p. 2247-2254

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mixed evidence for early bursts of morphological evolution in extant clades

Puttick, M. N., 1 Apr 2018, In : Journal of Evolutionary Biology. 31, 4, p. 502-515 14 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Model Senescent Microglia Induce Disease Related Changes in Alpha-synuclein Expression and Activity

Angelova, D. & Brown, D., 1 Aug 2018, In : Biomolecules. 8, 3, p. 1-25 25 p., 67.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)