Department of Biology & Biochemistry

Research Output

2018

Antimicrobial synergy of cationic grafted poly(para-phenylene ethynylene) and poly(para-phenylene vinylene) compounds with UV or metal ions against Enterococcus faecium

McBrearty, J., Barker, D., Damavandi, M., Wilson-Nieuwenhuis, J., Pilkington, L. I., Dempsey-Hibbert, N., Slate, A. J. & Whitehead, K. A., 2018, In : RSC Advances. 8, 41, p. 23433-23441 9 p.

Research output: Contribution to journalArticle

Open Access

Application of expanded perlite encapsulated bacteria and growth media for self-healing concrete

Alazhari, M., Sharma, T., Heath, A., Cooper, R. & Paine, K., 30 Jan 2018, In : Construction and Building Materials. 160, p. 610-619 10 p.

Research output: Contribution to journalArticle

Open Access
37 Citations (Scopus)
125 Downloads (Pure)

A suppressor/avirulence gene combination in hyaloperonospora arabidopsidis determines race specificity in Arabidopsis thaliana

Woods-Tör, A., Studholme, D. J., Cevik, V., Telli, O., Holub, E. B. & Tör, M., 1 Mar 2018, In : Frontiers in Plant Science. 9, p. 1-16 16 p., 265.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

A systems biology approach uncovers the core gene regulatory network governing iridophore fate choice from the neural crest.

Petratou, K., Subkhankulova, T., Lister, J., Rocco, A., Schwetlick, H. & Kelsh, R. N., 31 Oct 2018, In : Plos Genetics. 14, 10, 32 p., e1007402.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

Lawson, D. J., van Dorp, L. & Falush, D., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 3258.

Research output: Contribution to journalArticle

Open Access
52 Citations (Scopus)

Biology and genome of a newly discovered sibling species of Caenorhabditis elegans

Kanzaki, N., Tsai, I. J., Tanaka, R., Hunt, V. L., Liu, D., Tsuyama, K., Maeda, Y., Namai, S., Kumagai, R., Tracey, A., Holroyd, N., Doyle, S. R., Woodruff, G. C., Murase, K., Kitazume, H., Chai, C., Akagi, A., Panda, O., Ke, H. M., Schroeder, F. C. & 5 others, Wang, J., Berriman, M., Sternberg, P. W., Sugimoto, A. & Kikuchi, T., 10 Aug 2018, In : Nature Communications. 9, 1, 3216.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Bordetella pertussis isolates vary in their interactions with human complement components article

Brookes, C., Freire-Martin, I., Cavell, B., Alexander, F., Taylor, S., Persaud, R., Fry, N., Preston, A., Diavatopoulos, D. & Gorringe, A., 2018, In : Emerging Microbes and Infections. 7, 1, p. 1-14 15 p., 81.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Building bacterial bridges

Hoffmann, T., Reeksting, B., Cooper, R., Paine, K. & Gebhard, S., 15 May 2018, Microbiology Today, 45, 2, p. 60-63 4 p.

Research output: Contribution to specialist publicationArticle

Open Access

Building confidence through doing: Support maths for bioscientists

Corradi, H., Coyle, N. & Ring, N., 12 Jul 2018.

Research output: Contribution to conferencePaper

C9orf72, a protein associated with amyotrophic lateral sclerosis (ALS) is a guanine nucleotide exchange factor

Iyer, S., Subramanian, V. & Acharya, K. R., 17 Oct 2018, In : PeerJ. p. 1-29 29 p., e5815.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Catch Me if You Can: Streptococcus pyogenes Complement Evasion Strategies

Ermert, D. & Laabei, M., 1 Dec 2018, In : Journal of Innate Immunity. 11, 1, p. 3-12 10 p.

Research output: Contribution to journalReview article

Open Access
10 Citations (Scopus)

Characterisation and use of a functional Gadd45g bacterial artificial chromosome

Warr, N., May, J., Teboul, L., Suzuki, T., Asami, M., Perry, A., Wells, S. & Greenfield, A., 23 Nov 2018, In : Scientific Reports. 8, 1, 17318.

Research output: Contribution to journalArticle

Open Access

Chemical biology probes of mammalian GLUT structure and function

Holman, G. D., 20 Nov 2018, In : The Biochemical journal. 475, 22, p. 3511-3534 24 p.

Research output: Contribution to journalReview article

Open Access
8 Citations (Scopus)

Comparative genomic survey of Bacillus cereus sensu stricto isolates from the dairy production chain in Brazil

Marques Rossi, G. A., Silva, H. O., Gamero Aguilar, C. E., Rochetti, A. L., Pascoe, B., Méric, G., Mourkas, E., Hitchings, M. D., Mathias, L. A., De Azevedo Ruiz, V. L., Fukumasu, H., Sheppard, S. K. & Centola Vidal, A. M., 1 Feb 2018, In : FEMS Microbiology Letters. 365, 3, p. 1 - 9 9 p., fnx283.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
38 Downloads (Pure)

Comparative population genomics reveals key barriers to dispersal in Southern Ocean penguins

Clucas, G. V., Younger, J. L., Kao, D., Emmerson, L., Southwell, C., Wienecke, B., Rogers, A. D., Bost, C. A., Miller, G. D., Polito, M. J., Lelliott, P., Handley, J., Crofts, S., Phillips, R. A., Dunn, M. J., Miller, K. J. & Hart, T., 1 Dec 2018, In : Molecular Ecology. 27, 23, p. 4680-4697 18 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Comparative transcriptomics gives insights into the evolution of parasitism in Strongyloides nematodes at the genus, subclade and species level

Hunt, V. L., Hino, A., Yoshida, A. & Kikuchi, T., 24 Mar 2018, In : Scientific Reports. 8, 5192.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Complete Ichthyornis skull illuminates mosaic assembly of the avian head

Field, D., Hanson, M., Burnham, D., Wilson, L., Super, K., Ehret, D., Ebersole, J. & Bhullar, B-A. S., 3 May 2018, In : Nature. 557, 7703, p. 96 - 100 5 p.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
31 Downloads (Pure)

Computational Competitive and Negative Design to Derive a Specific cJun Antagonist

Lathbridge, A. & Mason, J., 23 Oct 2018, In : Biochemistry. 57, 42, p. 6108-6118 11 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
14 Downloads (Pure)

Continuous enzymatic hydrolysis of sugar beet pectin and L-arabinose recovery within an integrated biorefinery

Cárdenas-Fernández, M., Hamley-Bennett, C., Leak, D. J. & Lye, G. J., 1 Dec 2018, In : Bioresource Technology. 269, p. 195-202 8 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Convergent amino acid signatures in polyphyletic Campylobacter jejuni sub-populations suggest human niche tropism

Méric, G., McNally, A., Pessia, A., Mourkas, E., Pascoe, B., Mageiros, L., Vehkala, M., Corander, J. & Sheppard, S. K., 1 Mar 2018, In : Genome biology and evolution. 10, 3, p. 763-774 12 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Correlation of scopoletin-induced fluorescence with visible PPD symptoms in greenhouse cassava

Mahmod, N. & Beeching, J., 1 Nov 2018, In : Postharvest Biology and Technology. 145, p. 10-14 5 p.

Research output: Contribution to journalArticle

Crystal structure of an inferred ancestral bacterial pyruvate decarboxylase

Buddrus, L., Andrews, E. S. V., Leak, D., Danson, M., Arcus, V. L. & Crennell, S., 1 Mar 2018, In : Acta Crystallographica Section F:Structural Biology Communications. 74, 3, p. 179-186 8 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Crystal structure of NucB, a biofilm-degrading endonuclease

Baslé, A., Hewitt, L., Koh, A., Lamb, H. K., Thompson, P., Burgess, J. G., Hall, M. J., Hawkins, A. R., Murray, H. & Lewis, R. J., 9 Jan 2018, In : Nucleic Acids Research. 46, 1, p. 473-484 12 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Crystal structures of sampatrilat and sampatrilat-Asp in complex with human ACE: a molecular basis for domain-selectivity

Cozier, G. E., Schwager, S. L., Sharma, R. K., Chibale, K., Sturrock, E. D. & Acharya, K. R., 1 Apr 2018, In : FEBS Journal. 285, 8, p. 1477-1490 14 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Curious Kids: what is a species?

Kover, P., 27 Nov 2018, The Conversation.

Research output: Contribution to specialist publicationArticle

Current status of androgen receptor-splice variant 7 inhibitor niclosamide in castrate-resistant prostate-cancer

Sobhani, N., Generali, D., D'Angelo, A., Aieta, M. & Roviello, G., 31 Dec 2018, In : Investigational New Drugs. 36, 6, p. 1133-1137 5 p.

Research output: Contribution to journalReview article

Open Access
File
7 Citations (Scopus)
25 Downloads (Pure)

Current Status of Fibroblast Growth Factor Receptor-Targeted Therapies in Breast Cancer

Sobhani, N., Ianza, A., D'Angelo, A., Roviello, G., Giudici, F., Bortul, M., Zanconati, F., Bottin, C. & Generali, D., 15 Jul 2018, In : Stem Cells. 7, 7, 76.

Research output: Contribution to journalReview article

Open Access

Deciphering the complexity of human noncoding promoter-proximal transcriptome

Mapelli, S. N., Napoli, S., Pisignano, G., Garcia-Escudero, R., Carbone, G. M. & Catapano, C. V., 10 Dec 2018, In : Bioinformatics . p. bty981

Research output: Contribution to journalArticle

Open Access

Demographic causes of adult sex ratio variation and their consequences for parental cooperation

Eberhart-Phillips, L. J., Küpper, C., Carmona-Isunza, M. C., Vincze, O., Zefania, S., Cruz-López, M., Kosztolányi, A., Miller, T. E. X., Barta, Z., Cuthill, I. C., Burke, T., Székely, T., Hoffman, J. I. & Krüger, O., 25 Apr 2018, In : Nature Communications. 9, 1, p. 1-8 8 p., 1651.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Dendritic spine anomalies and PTEN alterations in a mouse model of VPA-induced autism spectrum disorder

Mahmood, U., Ahn, S., Yang, E-J., Choi, M., Kim, H., Regan, P., Cho, K. & Kim, H-S., 1 Feb 2018, In : Pulmonary Pharmacology & Therapeutics. 128, p. 110-121 12 p.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Development of a high-throughput ex-vivo burn wound model using porcine skin, and its application to evaluate new approaches to control wound infection

Alves, D. R., Booth, S. P., Scavone, P., Schellenberger, P., Salvage, J., Dedi, C., Thet, N. T., Jenkins, A. T. A., Waters, R., Ng, K. W., Overall, A. D. J., Metcalfe, A. D., Nzakizwanayo, J. & Jones, B. V., 15 Jun 2018, In : Frontiers in Cellular and Infection Microbiology. 8, JUN, 196.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Dielectric barrier discharge plasma microbubble reactor for pretreatment of lignocellulosic biomass

Wright, A., Bandulasena, H., Ibenegbu, C., Leak, D., Holmes, T., Zimmerman, W., Shaw, A. & Iza, F., 7 Sep 2018, In : AIChE Journal. 64, 11, p. 3803-3816 14 p.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Méric, G., Mageiros, L., Pensar, J., Laabei, M., Yahara, K., Pascoe, B., Kittiwan, N., Tadee, P., Post, V., Lamble, S., Bowden, R., Bray, J. E., Morgenstern, M., Jolley, K. A., Maiden, M. C. J., Feil, E. J., Didelot, X., Miragaia, M., de Lencastre, H., Moriarty, T. F. & 5 others, Rohde, H., Massey, R., Mack, D., Corander, J. & Sheppard, S. K., 1 Dec 2018, In : Nature Communications. 9, 1, p. 1-11 11 p., 5034.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
Open Access

Distinct interactions of Sox5 and Sox10 in fate specification of pigment cells in medaka and zebrafish

Nagao, Y., Takada, H., Miyadai, M., Adachi, T., Seki, R., Kamei, Y., Hara, I., Taniguchi, Y., Naruse, K., Hibi, M., Kelsh, R. N. & Hashimoto, H., 30 Apr 2018, In : Plos Genetics. 14, 4, e1007260.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Distinctive phosphoinositide- A nd Ca 2+-binding properties of normal and cognitive performance-linked variant forms of KIBRA C2 domain

Posner, M. G., Upadhyay, A., Ishima, R., Kalli, A. C., Harris, G., Kremerskothen, J., Sansom, M. S. P., Crennell, S. J. & Bagby, S., 15 Jun 2018, In : The Journal of biological chemistry. 293, 24, p. 9335-9344 10 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Distinct modes of derepression of an Arabidopsis immune receptor complex by two different bacterial effectors

Ma, Y., Guo, H., Hu, L., Martinez, P. P., Moschou, P. N., Cevik, V., Ding, P., Duxbury, Z., Sarris, P. F. & Jones, J. D. G., 9 Oct 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 41, p. 10218-10227 10 p.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Does Subjective Health Affect the Association between Biodiversity and Quality of Life? Insights from International Data

Skevington, S., Emsley, R., Dehner, S., Walker, I. & Reynolds, S., 10 Aug 2018, In : Applied Research in Quality of Life. p. 1-17 17 p.

Research output: Contribution to journalArticle

Open Access

Early Evolution of Modern Birds Structured by Global Forest Collapse at the End-Cretaceous Mass Extinction

Field, D., Bercovici, A., Berv, J. S., Dunn, R., Fastovsky, D., Lyson, T. R., Vajda, V. & Gauthier, J., 4 Jun 2018, In : Current Biology . 28, 11, p. 1825-1831 7 p.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
24 Downloads (Pure)

Ecological and demographic correlates of cooperation from individual to budding dispersal

Rodrigues, A. M. M. & Taylor, T. B., 1 Jul 2018, In : Journal of Evolutionary Biology. 31, 7, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
11 Downloads (Pure)

Efficient Enzymatic Ligation of Inhibitor Cystine Knot Spider Venom Peptides: Using Sortase A To Form Double-Knottins That Probe Voltage-Gated Sodium Channel NaV1.7

Agwa, A. J., Blomster, L. V., Craik, D. J., King, G. F. & Schroeder, C. I., 17 Oct 2018, In : Bioconjugate Chemistry. 29, 10, p. 3309-3319 11 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Elevated atmospheric CO2 promoted speciation in mosquitoes (Diptera, Culicidae)

Tang, C., Davis, K., Delmer, C., Yang, D. & Wills, M., 1 Dec 2018, In : Communications Biology. 1, 1, p. 1-8 8 p., 182.

Research output: Contribution to journalArticle

Open Access
Open Access
16 Citations (Scopus)
49 Downloads (Pure)

Embracing the next generation of plant scientists

Hetherington, F. M. & Nützmann, H. W., 1 Jan 2018, In : New Phytologist. 217, 2, p. 504-506 3 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al.

O'Reilly, J. E., Puttick, M. N., Pisani, D. & Donoghue, P. C. J., 1 Jul 2018, In : Palaeontology. 61, 4, p. 631-635 5 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)
Open Access
9 Citations (Scopus)

Endless skulls most beautiful

Field, D. J., 16 Jan 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 3, p. 448-450 3 p.

Research output: Contribution to journalEditorial

Open Access
File
2 Citations (Scopus)
45 Downloads (Pure)

Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica

Mühlhausen, S., Schmitt, H. D., Pan, K. T., Plessmann, U., Urlaub, H., Hurst, L. D. & Kollmar, M., 9 Jul 2018, In : Current Biology. 28, 13, p. 2046-2057 18 p.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)