Department of Biology & Biochemistry

Research Output

2019

High tech research reveals preferential feeding in honey bees

Greco, M. K., Coates, B. & Feil, E. J., 2019, In : Journal of Apicultural Research. 58, 3, p. 471-477 7 p.

Research output: Contribution to journalArticle

Identification of the Initial Steps in Signal Transduction in the α4β2 Nicotinic Receptor: Insights from Equilibrium and Nonequilibrium Simulations

Oliviera, S., Shoemark, D. K., Rego Campello, H., Wonnacott, S., Gallagher, T., Sessions, R. B. & Mulholland, A. J., 2 Jul 2019, In : Structure. 27, 7, p. 1171-1183.e3 17 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Improved characterisation of MRSA transmission using within-host bacterial sequence diversity

Hall, M. D., Holden, M. T. G., Srisomang, P., Mahavanakul, W., Wuthiekanun, V., Limmathurotsakul, D., Fountain, K., Parkhill, J., Nickerson, E. K., Peacock, S. J. & Fraser, C., 8 Oct 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access

In eubacteria, unlike eukaryotes, there is no evidence for selection favouring fail-safe 3' additional stop codons

Ho, A. T. & Hurst, L. D., 17 Sep 2019, In : Plos Genetics. 15, 9, p. 1-32 32 p., e1008386.

Research output: Contribution to journalArticle

Open Access
Open Access
3 Citations (Scopus)
21 Downloads (Pure)

Inhibition of extracellular proteases improves the production of a xylanase in Parageobacillus thermoglucosidasius

Holland, A. T. N., Danson, M. J. & Bolhuis, A., 20 Mar 2019, In : BMC Biotechnology. 19, 1, 17.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Integrating Transposable Elements in the 3D Genome

Bousios, A., Nuetzmann, H-W., Buck, D. & Michieletto, D., 30 Oct 2019, In : Preprint on arXiv.

Research output: Contribution to journalArticle

File
15 Downloads (Pure)
2 Citations (Scopus)

Light-Induced Artemisinin Biosynthesis Is Regulated by the bZIP Transcription Factor AaHY5 in Artemisia annua

Hao, X., Zhong, Y., Nützmann, H-W., Fu, X., Yan, T., Shen, Q., Ma, Y., Zhao, J., Osbourn, A., Li, L. & Tang, K., 1 Aug 2019, In : Plant & Cell Physiology. 60, 8, p. 1747-1760 14 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Lipid production through the single-step microwave hydrolysis of macroalgae using the oleaginous yeast Metschnikowia pulcherrima

Abeln, F., Fan, J., Budarin, V. L., Briers, H., Parsons, S., Allen, M. J., Henk, D. A., Clark, J. & Chuck, C. J., 1 Mar 2019, In : Algal Research. 38, p. 1-9 9 p., 101411.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
13 Downloads (Pure)

Live imaging of neural crest and pigment cells and transient transgenic manipulation of gene activity

Ballim, R., Nagao, Y. & Kelsh, R. N., 2019, Neural Crest Cells. Schwartz, Q. & Wizniak, S. (eds.). Springer, Vol. 1976. p. 195-206 12 p. (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

Loss-of-function mutations in the melanocortin 1 receptor cause disruption of dorso-ventral countershading in teleost fish

Cal, L., Suarez-Bregua, P., Braasch, I., Irion, U., Kelsh, R., Cerdá-Reverter, J. M. & Rotllant, J., 1 Nov 2019, In : Pigment Cell and Melanoma Research. 32, 6, p. 817-828 12 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Mapping 123 million neonatal, infant and child deaths between 2000 and 2017

Global Burden of Disease Collaborator Network, 16 Oct 2019, In : Nature. 574, 7778, p. 353-358 6 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Mass extinctions made life on Earth more diverse – and might again

Longrich, N., 13 Sep 2019, The Conversation.

Research output: Contribution to specialist publicationArticle

Mate fidelity in a polygamous shorebird, the snowy plover (Charadrius nivosus)

Naerhulan, H., Valdebenito, J. O., Harding, P., Cruz-Lopez, M., Serrano-Meneses, M. A., James, R., Szekely, T. & Kupan, K., 1 Sep 2019, In : Ecology & Evolution. 9, 18, p. 10734-10745 12 p.

Research output: Contribution to journalArticle

Open Access

Medium Chain Carboxylic Acids from Complex Organic Feedstocks by Mixed Culture Fermentation

De Groof, V., Coma, M., Arnot, T., Leak, D. J. & Lanham, A. B., 22 Jan 2019, In : Molecules. 24, 3, p. 1-32 32 p., 398.

Research output: Contribution to journalReview article

Open Access
10 Citations (Scopus)

METHOD OF CAS9 MEDIATED GENOME ENGINEERING

Perry, A., Suzuki, T. & Asami, M., 2019, Patent No. WO 2016/097751, 18 Dec 2015, Priority date 18 Dec 2014, Priority No. 1422636.9

Research output: Patent

Mice with a conditional deletion of Talpid3 (KIAA0586) - a model for Joubert Syndrome

Bashford, A. L. & Subramanian, V., 18 Jul 2019, In : The Journal of Pathology. 248, 4, p. 396-408 13 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Microbial fuel cells: An overview of current technology

Slate, A. J., Whitehead, K. A., Brownson, D. A. C. & Banks, C. E., 1 Mar 2019, In : Renewable and Sustainable Energy Reviews. 101, p. 60-81 22 p.

Research output: Contribution to journalReview article

63 Citations (Scopus)

Microglia and the aging brain: are senescent microglia the key to neurodegeneration?

Angelova, D. M. & Brown, D. R., 1 Dec 2019, In : Journal of Neurochemistry. 151, 6, p. 676-688 13 p.

Research output: Contribution to journalReview article

2 Citations (Scopus)

Micro-scaled topographies direct differentiation of human epidermal stem cells

Zijl, S., Vasilevich, A. S., Viswanathan, P., Helling, A. L., Beijer, N. R. M., Walko, G., Chiappini, C., de Boer, J. & Watt, F. M., 15 Jan 2019, In : Acta Biomaterialia. 84, p. 133-145 13 p.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Molecular analysis of accessory gene regulator functionality and virulence genes in Staphylococcus aureus derived from pediatric wound infections

Taghizadeh Maleki, D., Ghalavand, Z., Laabei, M., Nikmanesh, B., Houri, H., Kodori, M., Hashemi, A., Kadkhoda, H. & Eslami, G., 30 Sep 2019, In : Infection, Genetics and Evolution. 73, p. 255-260 6 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
1 Downloads (Pure)

Molecular Design Strategy to Construct the Near-Infrared Fluorescent Probe for Selectively Sensing Human Cytochrome P450 2J2

Ning, J., Liu, T., Dong, P., Wang, W., Ge, G., Wang, B., Yu, Z., Shi, L., Tian, X., Huo, X., Feng, L., Wang, C., Sun, C., Cui, J-N., James, T. D. & Ma, X., 16 Jan 2019, In : Journal of the American Chemical Society. 141, 2, p. 1126-1134 9 p.

Research output: Contribution to journalArticle

Open Access
File
36 Citations (Scopus)
13 Downloads (Pure)

Molecular features of lipoprotein CD0873: A potential vaccine against the human pathogen Clostridioides difficile

Bradshaw, W. J., Bruxelle, J. F., Kovacs-Simon, A., Harmer, N. J., Janoir, C., Péchiné, S., Acharya, K. R. & Michell, S. L., 25 Oct 2019, In : The Journal of biological chemistry. 294, 43, p. 15850-15861 12 p.

Research output: Contribution to journalArticle

Open Access

Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland

Al-Khafaji, A. M., Clegg, S. R., Pinder, A. C., Luu, L., Hansford, K. M., Seelig, F., Dinnis, R. E., Margos, G., Medlock, J. M., Feil, E. J., Darby, A. C., McGarry, J. W., Gilbert, L., Plantard, O., Sassera, D. & Makepeace, B. L., 1 Jan 2019, In : Ticks and Tick-Borne Diseases. 10, 1, p. 52-62 11 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Natural variation in Arabidopsis shoot branching plasticity in response to nitrate supply affects fitness

de Jong, M., Tavares, H., Pasam, R. K., Butler, R., Ward, S., George, G., Melnyk, C. W., Challis, R., Kover, P. X. & Leyser, O., 30 Sep 2019, In : Plos Genetics. 15, 9, p. 1-32 31 p., e1008366.

Research output: Contribution to journalArticle

Open Access

Neural Crest Methodologies in Zebrafish and Medaka

Petratou, K., Camargo Sosa, K., Al Jabri, R., Nagao, Y. & Kelsh, R. N., 2019, Methods relevant to Neural Crest Research. Schwartz, Q. & Wizniak, S. (eds.). Springer, Vol. 1976. p. 167-184 18 p. (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat

Dilks, T., Halsey, K., De Vos, R. P., Hammond-Kosack, K. E. & Brown, N. A., 30 Apr 2019, In : PLoS Pathogens. 15, 4, p. 1-26 26 p., e1007666.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Novel Agents in Heavily Pretreated Metastatic Gastric Cancer: More Shadows Than Lights

Roviello, G., D'Angelo, A., Roudi, R., Petrioli, R. & Mini, E., 4 Jul 2019, In : Journal of oncology. 2019, 9 p., 5692317.

Research output: Contribution to journalReview article

Open Access
2 Citations (Scopus)

Offspring sex ratio is unrelated to parental quality and time of breeding in a multiple-breeding shorebird

Que, P., Székely, T., Wang, P., Lu, Q., Lei, W., Liu, Y. & Zhang, Z., 1 Apr 2019, In : Journal of Ornithology. 160, 2, p. 443-452 10 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Origin of horsetails and the role of whole-genome duplication in plant macroevolution

Clark, J. W., Puttick, M. N. & Donoghue, P. C. J., 1 Nov 2019, In : Proceedings. Biological sciences. 286, 1914, p. 1-10 10 p., 20191662.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
12 Downloads (Pure)

Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling

Lozano-Fernandez, J., Giacomelli, M., Fleming, J. F., Chen, A., Vinther, J., Thomsen, P. F., Glenner, H., Palero, F., Legg, D. A., Iliffe, T. M., Pisani, D. & Olesen, J., 1 Aug 2019, In : Genome biology and evolution. 11, 8, p. 2055-2070 16 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
13 Downloads (Pure)

Parental care and the evolution of terrestriality in frogs

Vági, B., Végvári, Z., Liker, A., Freckleton, R. P. & Székely, T., 30 Apr 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1900, p. 1-10 10 p., 20182737.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
24 Downloads (Pure)

Patterning of human epidermal stem cells on undulating elastomer substrates reflects differences in cell stiffness

Mobasseri, S. A., Zijl, S., Salameti, V., Walko, G., Stannard, A., Garcia-Manyes, S. & Watt, F. M., 15 Mar 2019, In : Acta Biomaterialia. 87, p. 256-264 9 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Patterns of cross-resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials

Colclough, A., Corander, J., Sheppard, S. K., Bayliss, S. C. & Vos, M., 1 Jun 2019, In : Evolutionary Applications. 12, 5, p. 878-887 10 p.

Research output: Contribution to journalArticle

Open Access

Peptide-Membrane Interactions Affect the Inhibitory Potency and Selectivity of Spider Toxins ProTx-II and GpTx-1

Lawrence, N., Wu, B., Ligutti, J., Cheneval, O., Agwa, A. J., Benfield, A. H., Biswas, K., Craik, D. J., Miranda, L. P., Henriques, S. T. & Schroeder, C. I., 18 Jan 2019, In : ACS Chemical Biology. 14, 1, p. 118-130 13 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Phage predation shapes the population structure of Shiga-toxigenic Escherichia coli O157:H7 in the UK: An evolutionary perspective

Cowley, L. A., Dallman, T. J., Jenkins, C. & Sheppard, S. K., 30 Aug 2019, In : Frontiers in Genetics. 10, JUL, p. 1-7 7 p., 763.

Research output: Contribution to journalArticle

Open Access

Phylogenetic incongruence and homoplasy in the appendages and bodies of arthropods: Why broad character sampling is best

Brinkworth, A., Wills, M. & Sansom, R., 1 Sep 2019, Zoological Journal of the Linnean Society, 187, 1, p. 100-116 17 p.

Research output: Contribution to specialist publicationArticle

Open Access
File
1 Downloads (Pure)

Phylogeography of the Rufous vanga and the role of bioclimatic transition zones in promoting speciation within Madagascar

Younger, J., Dempster, P., Nyári, Á. S., Helms, T., Raherilalao, M. J., Goodman, S. M. & Reddy, S., 1 Oct 2019, In : Molecular Phylogenetics and Evolution. 139, p. 1-11 11 p., 106535.

Research output: Contribution to journalArticle

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

Bayliss, S. C., Thorpe, H. A., Coyle, N. M., Sheppard, S. K. & Feil, E. J., 1 Oct 2019, In : GigaScience. 8, 10, p. 1-9 9 p., giz119.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Postmitotic cell longevity–associated genes: a transcriptional signature of postmitotic maintenance in neural tissues

Castillo-Morales, A., Monzón-Sandoval, J., Urrutia, A. O. & Gutiérrez, H., 1 Feb 2019, In : Neurobiology of Aging. 74, p. 147-160 14 p.

Research output: Contribution to journalArticle

Prevalence of faecal carriage of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli in veterinary hospital staff and students

Royden, A., Ormandy, E., Pinchbeck, G., Pascoe, B., Hitchings, M. D., Sheppard, S. K. & Williams, N. J., 1 Jan 2019, In : Veterinary Record Open. 6, 1, e000307.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, M. N., O'Reilly, J. E., Pisani, D. & Donoghue, P. C. J., 1 Jan 2019, In : Palaeontology. 62, 1, p. 1-17 17 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Processes associated with ionic current rectification at a 2D-titanate nanosheet deposit on a microhole poly(ethylene terephthalate) substrate

Putra, B. R., Harito, C., Bavykin, D. V., Walsh, F. C., Wahyuni, W. T., Boswell, J. A., Squires, A. M., Schmitt, J. M. F., Da Silva, M. A., Edler, K. J., Fletcher, P. J., Gesell, A. E. & Marken, F., 12 Apr 2019, In : Journal of Solid State Electrochemistry. 23, 4, p. 1237-1248 12 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
42 Downloads (Pure)

Protein Manipulation

Leak, D. & Bartosiak-Jentys, J., 2019, Patent No. WO 2013/175190 (BR112014029129, EP2852663, US2015104850) , 20 May 2013, Priority date 22 May 2012, Priority No. 1209041.1

Research output: Patent

Receding ice drove parallel expansions in Southern Ocean penguins

Cole, T. L., Dutoit, L., Dussex, N., Hart, T., Alexander, A., Younger, J. L., Clucas, G. V., Frugone, M. J., Cherel, Y., Cuthbert, R., Ellenberg, U., Fiddaman, S. R., Hiscock, J., Houston, D., Jouventin, P., Mattern, T., Miller, G., Miskelly, C., Nolan, P., Polito, M. J. & 8 others, Quillfeldt, P., Ryan, P. G., Smith, A., Tennyson, A. J. D., Thompson, D., Wienecke, B., Vianna, J. A. & Waters, J. M., 26 Dec 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 52, p. 26690-26696 7 p.

Research output: Contribution to journalArticle

Open Access
File
1 Downloads (Pure)

Recent mixing of Vibrio parahaemolyticus populations

Yang, C., Pei, X., Wu, Y., Yan, L., Yan, Y., Song, Y., Coyle, N. M., Martinez-Urtaza, J., Quince, C., Hu, Q., Jiang, M., Feil, E., Yang, D., Song, Y., Zhou, D., Yang, R., Falush, D. & Cui, Y., 31 Oct 2019, In : ISME Journal. 13, 10, p. 2578-2588 11 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
11 Downloads (Pure)