Department of Biology & Biochemistry

Research Output

2019

Core genome sequence analysis to characterize Salmonella enterica serovar Rissen ST469 from a swine production chain

Prasertsee, T., Chuammitri, P., Deeudom, M., Chokesajjawatee, N., Santiyanont, P., Tadee, P., Nuangmek, A., Tadee, P., Sheppard, S. K., Pascoe, B. & Patchanee, P., 2 Sep 2019, In : International Journal of Food Microbiology. 304, p. 68-74 7 p.

Research output: Contribution to journalArticle

Open Access
File

Correction to: Molecular Design Strategy to Construct the Near-Infrared Fluorescent Probe for Selectively Sensing Human Cytochrome P450 2J2 (Journal of the American Chemical Society (2019) 141 (1126-1134) DOI: 10.1021/jacs.8b12136)

Ning, J., Liu, T., Dong, P., Wang, W., Ge, G., Wang, B., Yu, Z., Shi, L., Tian, X., Huo, X., Feng, L., Wang, C., Sun, C., Cui, J., James, T. D. & Ma, X., 21 Aug 2019, In : Journal of the American Chemical Society. 141, 33, p. 1-1 1 p., 13278.

Research output: Contribution to journalArticle

Corticosteroid switch after progression on abiraterone acetate plus prednisone

Roviello, G., Sobhani, N., Corona, S. P. & D'Angelo, A., 8 Nov 2019, In : International Journal of Clinical Oncology. 7 p.

Research output: Contribution to journalReview article

Countershading in zebrafish results from an Asip1 controlled dorsoventral gradient of pigment cell differentiation.

Cal, L., Suarez-Bregua, P., Comesana, P., Owen, J., Braasch, I., Kelsh, R. N., Cerda-Reverter, J. & Rotllant, J., 1 Dec 2019, In : Scientific Reports. 9, 1, p. 1-13 13 p., 3449.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
27 Downloads (Pure)

Craniodental and postcranial characters of non-avian Dinosauria often imply different trees

Li, Y., Ruta, M. & Wills, M., 26 Nov 2019, In : Systematic Biology. syz077.

Research output: Contribution to journalArticle

Open Access

Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities

Saitta, E. T., Liang, R., Lau, M. C., Brown, C. M., Longrich, N. R., Kaye, T. G., Novak, B. J., Salzberg, S. L., Norell, M. A., Abbott, G. D., Dickinson, M. R., Vinther, J., Bull, I. D., Brooker, R. A., Martin, P., Donohoe, P., Knowles, T. D., Penkman, K. E. & Onstott, T., 18 Jun 2019, In : eLife. 8, e46205.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Crystal structures of angiotensin-converting enzyme from Anopheles gambiae in its native form and with a bound inhibitor

Cashman, J. S., Cozier, G. E., Harrison, C., Isaac, R. E. & Acharya, K. R., 4 Nov 2019, In : Biochemical Journal. 476, 22, p. 3505-3520 16 p.

Research output: Contribution to journalArticle

Cyclizing Disulfide-Rich Peptides Using Sortase A

Agwa, A. J., Craik, D. J. & Schroeder, C. I., 30 Jun 2019, Enzyme-Mediated Ligation Methods. Schmidt, M. & Nuijens, T. (eds.). New York: Springer, Vol. 2012. p. 29-41 13 p. (Methods in Molecular Biology; vol. 2012).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Delta-like 1-mediated cis-inhibition of Jagged1/2 signalling inhibits differentiation of human epidermal cells in culture

Negri, V. A., Logtenberg, M. E. W., Renz, L. M., Oules, B., Walko, G. & Watt, F. M., 25 Jul 2019, In : Scientific Reports. 9, 1, p. 1-11 11 p., 10825.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

De-repression of the smvA efflux system arises in clinical isolates of Proteus mirabilis and reduces susceptibility to chlorhexidine and other biocides

Pelling, H., Bock, L. J., Nzakizwanayo, J., Wand, M. E., Denham, E. L., MacFarlane, W. M., Sutton, J. M. & Jones, B. V., 21 Nov 2019, In : Antimicrobial Agents and Chemotherapy. 63, 12, p. 1-15 15 p., e01535-19.

Research output: Contribution to journalArticle

Open Access

Description of klebsiella spallanzanii sp. Nov. and of klebsiella pasteurii sp. nov.

Merla, C., Rodrigues, C., Passet, V., Corbella, M., Thorpe, H. A., Kallonen, T. V. S., Zong, Z., Marone, P., Bandi, C., Sassera, D., Corander, J., Feil, E. J. & Brisse, S., 25 Oct 2019, In : Frontiers in Microbiology. 10, p. 1-9 9 p., 2360.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Developing a high-throughput snp-based marker system to facilitate the introgression of traits from aegilops species into bread wheat (Triticum aestivum)

Przewieslik-Allen, A. M., Burridge, A. J., Wilkinson, P. A., Winfield, M. O., Shaw, D. S., McAusland, L., King, J., King, I. P., Edwards, K. J. & Barker, G. L. A., 24 Jan 2019, In : Frontiers in Plant Science. 9, p. 1-12 12 p., 1993.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Dicer1 is required for pigment cell and craniofacial development in zebrafish

Weiner, A., Scampoli, N., Steeman, T., Dooley, C. M., Busch-Nentwich, E., Kelsh, R. N. & Calcaterra, N., 30 Apr 2019, In : Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1862, 4, p. 472-485 14 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
5 Downloads (Pure)

Differential expression of a prophage-encoded glycocin and its immunity protein suggests a mutualistic strategy of a phage and its host

Denham, E. L., Piersma, S., Rinket, M., Reilman, E., de Goffau, M. C. & van Dijl, J. M., 26 Feb 2019, In : Scientific Reports. 9, 1, 2845.

Research output: Contribution to journalArticle

Open Access

Dinosaur bones: hidden life revealed inside them

Longrich, N., 26 Jul 2019, The Conversation.

Research output: Contribution to specialist publicationArticle

Diverse NLR immune receptors activate defence via the RPW8-NLR NRG1

Castel, B., Ngou, P-M., Cevik, V., Redkar, A., Kim, D-S., Yang, Y., Ding, P. & Jones, J. D. G., 1 Apr 2019, In : New Phytologist. 222, 2, p. 966-980 5 p.

Research output: Contribution to journalArticle

Open Access
24 Citations (Scopus)

Diversity of staphylococcal species cultured from captive livingstone's fruit bats (pteropus livingstonii) and their environment

Fountain, K., Roberts, L., Young, V., Barbon, A., Frosini, S. M., Lloyd, D. H. & Loeffler, A., 5 Apr 2019, In : Journal of Zoo and Wildlife Medicine . 50, 1, p. 266-269 4 p.

Research output: Contribution to journalArticle

Domestication of Campylobacter jejuni NCTC 11168

Pascoe, B., Williams, L. K., Calland, J. K., Meric, G., Hitchings, M. D., Dyer, M., Ryder, J., Shaw, S., Lopes, B. S., Chintoan-Uta, C., Allan, E., Vidal, A., Fearnley, C., Everest, P., Pachebat, J. A., Cogan, T. A., Stevens, M. P., Humphrey, T. J., Wilkinson, T. S., Cody, A. J. & 12 others, Colles, F. M., Jolley, K. A., Maiden, M. C. J., Strachan, N., Pearson, B. M., Linton, D., Wren, B. W., Parkhill, J., Kelly, D. J., van Vliet, A. H. M., Forbes, K. J. & Sheppard, S. K., 1 Jul 2019, In : Microbial Genomics. 5, 7, 000279.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
2 Citations (Scopus)
172 Downloads (Pure)

ENDOGENOUS RETROVIRUS TRANSCRIPTION AS A MARKER FOR PRIMATE NAÏVE PLURIPOTENT STEM CELLS

Wang, J., Izsvák, Z. & Hurst, L., 2019, Patent No. WO 2016/055519 A1(EP3204490, US2017313978), 7 Oct 2015, Priority date 7 Oct 2014, Priority No. 10 2014 114 558.5

Research output: Patent

Endothelin neurotransmitter signalling controls zebrafish social behaviour

Carreno-Gutierrez, H., Colanesi, S., Cooper, B., Kelsh, R. N., Reichmann, F., Young, A. & Norton, W., 1 Dec 2019, In : Scientific Reports. 9, 1, 3040.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Endothelin receptor Aa regulates proliferation and differentiation of Erb-dependent pigment progenitors in zebrafish

Camargo Sosa, K., Colanesi, S., Muller, J., Schulte-Mercker, S., Stemple, D., Patton, E. & Kelsh, R. N., 27 Feb 2019, In : Plos Genetics. 15, 2, p. 1-14 14 p., e1007941.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)
25 Downloads (Pure)

Engineering Escherichia coli for the production of butyl octanoate from endogenous octanoyl-CoA

Chacón, M. G., Kendrick, E. G. & Leak, D. J., 1 Jul 2019, In : PeerJ. 2019, 7, e6971.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
1 Downloads (Pure)

Esterification of geraniol as a strategy for increasing product titre and specificity in engineered Escherichia coli

Chacón, M. G., Marriott, A., Kendrick, E. G., Styles, M. Q. & Leak, D. J., 8 Jun 2019, In : Microbial Cell Factories. 18, 1, p. 1-11 11 p., 105.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Evidence for the Success of a Quantitative Assessment Instrument for Teaching Evolution in Primary Schools in England

Buchan, L., Hejmadi, M. & Hurst, L., 2019, Evolution Education Re-considered. Harms, U. & Reiss, M. (eds.). UK: Springer, p. 21-40 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent

Steinig, E. J., Duchene, S., Ashley-Robinson, D., Monecke, S., Yokoyama, M., Laabei, M., Slickers, P., Andersson, P., Williamson, D., Kearns, A., Goering, R. V., Dickson, E., Ehricht, R., Ip, M., O'Sullivan, M. V. N., Coombs, G. W., Petersen, A., Brennan, G., Shore, A. C., Coleman, D. C. & 18 others, Pantosti, A., De Lencastre, H., Westh, H., Kobayashi, N., Heffernan, H., Strommenger, B., Layer, F., Weber, S., Vangstein Aamot, H., Skakni, L., Peacock, S. J., Sarovich, D., Harris, S., Parkhill, J., Massey, R. C., Holden, M. T. G., Bentley, S. D. & Tong, S. Y. C., 26 Nov 2019, In : mBio. 10, 6, 20 p., e01105-19.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Evolutionary Quantitative Genetics of Genomic Imprinting

O'Brien, E. K. & Wolf, J. B., 1 Jan 2019, In : Genetics. 211, 1, p. 75-88 14 p.

Research output: Contribution to journalArticle

Evolution tells us we might be the only intelligent life in the universe

Longrich, N., 18 Oct 2019, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access

Excitation-energy-dependent molecular beacon detects early stage neurotoxic aβ aggregates in the presence of cortical neurons

Gulácsy, C. E., Meade, R., Catici, D. A. M., Soeller, C., Pantos, G. D., Jones, D. D., Alibhai, D., Jepson, M., Valev, V. K., Mason, J. M., Williams, R. J. & Pudney, C. R., 20 Mar 2019, In : ACS Chemical Neuroscience. 10, 3, p. 1240-1250 11 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
40 Downloads (Pure)

Exploring new strategies for grafting binding peptides onto protein loops using a consensus-designed tetratricopeptide repeat scaffold

Madden, S. K., Perez-Riba, A. & Itzhaki, L. S., 1 Apr 2019, In : Protein Science. 28, 4, p. 738-745 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Exposing the Interplay Between Enzyme Turnover, Protein Dynamics and the Membrane Environment in Monoamine Oxidase B

Jones, H. B. L., Crean, R. M., Mullen, A., Kendrick, E., Bull, S. D., Wells, S. A., Carbery, D. R., MacMillan, F., van der Kamp, M. W. & Pudney, C. R., 7 May 2019, In : Biochemistry. 58, 18, p. 2362-2372 11 p.

Research output: Contribution to journalArticle

Open Access
File
30 Downloads (Pure)

FICC-Seq: a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA

Carter, J-M., Emmett, W., Rdl Mozos, I., Kotter, A., Helm, M., Ule, J. & Hussain, S., 4 Nov 2019, In : Nucleic Acids Research. 47, 19, p. e113-e124 12 p., gkz658.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Fluorescence-activated Cell Sorting and NanoString profiling of Single Neural Crest Cells and Pigment Cells

Subkhankulova, T. & Kelsh, R. N., 2019, Methods Relevant to Neural Crest Research. Schwartz, Q. & Wizniak, S. (eds.). Springer, Vol. 1976. p. 185-193 9 p. (Methods in Molecular Biology; vol. 1976).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Fluorescence Imaging of Peripheral Nerves by a Nav1.7-Targeted Inhibitor Cystine Knot Peptide

Gonzales, J., Demetrio de Souza Franca, P., Jiang, Y., Pirovano, G., Kossatz, S., Guru, N., Yarilin, D., Agwa, A. J., Schroeder, C. I., Patel, S., Ganly, I., King, G. F. & Reiner, T., 20 Nov 2019, In : Bioconjugate Chemistry. 30, 11, p. 2879-2888 10 p.

Research output: Contribution to journalArticle

Frequency, mutual exclusivity and clinical associations of myositis autoantibodies in a combined European cohort of idiopathic inflammatory myopathy patients

Betteridge, Z., Tansley, S., Shaddick, G., Chinoy, H., Cooper, R. G., New, R. P., Lilleker, J. B., Vencovsky, J., Chazarain, L., Danko, K., Nagy-Vincze, M., Bodoki, L., Dastmalchi, M., Ekholm, L., Lundberg, I. E. & McHugh, N., 1 Jul 2019, In : Journal of Autoimmunity. 101, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Functional characterization of BcrR: a one-component transmembrane signal transduction system for bacitracin resistance

Darnell, R., Nakatani, Y., Knottenbelt, M., Gebhard, S. & Cook, G. M., 1 Apr 2019, In : Microbiology. 165, 4, p. 475-487 13 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)

Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease

Mourkas, E., Florez-Cuadrado, D., Pascoe, B., Calland, J. K., Bayliss, S. C., Mageiros, L., Méric, G., Hitchings, M. D., Quesada, A., Porrero, C., Ugarte-Ruiz, M., Gutiérrez-Fernández, J., Domínguez, L. & Sheppard, S. K., 5 Aug 2019, In : Environmental Microbiology. p. 1-17 17 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Genetic, phenotypic and ecological differentiation suggests incipient speciation in two Charadrius plovers along the Chinese coast

Wang, X., Que, P., Heckel, G., Hu, J., Zhang, X., Chiang, C. Y., Zhang, N., Huang, Q., Liu, S., Martinez, J., Pagani-Núñez, E., Dingle, C., Leung, Y. Y., Székely, T., Zhang, Z. & Liu, Y., 27 Jun 2019, In : BMC Evolutionary Biology. 19, 1, 135.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Genetic diversity of composite enterotoxigenic Staphylococcus epidermidis pathogenicity islands

Banaszkiewicz, S., Calland, J., Mourkas, E., Sheppard, S., Pascoe, B. & Bania, J., 1 Dec 2019, In : Genome biology and evolution. 11, 12, p. 3498-3509 evz259.

Research output: Contribution to journalArticle

Open Access

Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages

Jones, B. & Nzakizwanayo, J., 6 Aug 2019, In : Frontiers in Microbiology. 10, p. 1-14 14 p., 1783.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Genomic Perspective on Multivariate Variation, Pleiotropy, and Evolution

Melo, D., Marroig, G. & Wolf, J. B., 1 Jun 2019, In : Journal of Heredity. 110, 4, p. 479-493 15 p., esz011.

Research output: Contribution to journalArticle

GPCR-mediated glucose sensing system regulates light-dependent fungal development and mycotoxin production

dos Reis, T. F., Mellado, L., Lohmar, J. M., Silva, L. P., Zhou, J. J., Calvo, A. M., Goldman, G. H. & Brown, N. A., 14 Oct 2019, In : Plos Genetics. 15, 10, p. 1-27 27 p., e1008419.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Heterologous Microcompartment Assembly in Bacillaceae: Establishing the Components Necessary for Scaffold Formation

Wade, Y., Daniel, R. A. & Leak, D. J., 19 Jul 2019, In : ACS Synthetic Biology. 8, 7, p. 1642-1654 13 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

hif-1 plays a role in hypoxia-induced gustatory plasticity of Caenorhabditis elegans

Sorathia, N., Chawda, N., Saraki, K., Rajadhyaksha, M. S. & Hejmadi, M., 2019, In : International Journal of Neuroscience. 129, 9, p. 864-870 7 p.

Research output: Contribution to journalArticle

Higher education outreach: examining key challenges for academics

Johnson, M., Danvers, E., Hinton-Smith, T., Atkinson, K., Bowden, G., Foster, J., Garner, K., Garrud, P., Greaves, S., Harris, P., Hejmadi, M., Hill, D., Hughes, G., Jackson, L., O’Sullivan, A., ÓTuama, S., Perez Brown, P., Philipson, P., Ravenscroft, S., Rhys, M. & 6 others, Ritchie, T., Talbot, J., Walker, D., Watson, J., Williams, M. & Williams, S., 4 Feb 2019, In : British Journal of Educational Studies. 67, 4, p. 469-491 23 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Higher value products from AD: a review on medium chain carboxylic acids from bio-waste

De Groof, V., Arnot, T., Leak, D., Coma, M. & Lanham, A., 24 Jan 2019.

Research output: Contribution to conferencePoster

Highly feminised sex ratio estimations for the world’s third largest nesting aggregation of loggerhead sea turtles

Tanner, C., Marco, A., Martins, S., Abella Perez, E. & Hawkes, L., 4 Jul 2019, In : Marine Ecology Progress Series (MPES). 621, p. 209-219 11 p., 621.

Research output: Contribution to journalArticle

1 Citation (Scopus)