Department of Biology & Biochemistry

Research Output

2020

Single molecule imaging reveals cFos is capable of binding to and diffusing on DNA tightropes independently of cJun

Leech, J. T., Don, N. A., Mason, J. M. & Kad, N. M., 2020, (Unpublished) In : bioRxiv.

Research output: Contribution to journalArticle

Size-Tunable Nanoneedle Arrays for Influencing Stem Cell Morphology, Gene Expression, and Nuclear Membrane Curvature

Seong, H., Higgins, S., Penders, J., Armstrong, J., Crowder, S., Moore, A., Sero, J., Becce, M. & Stevens, M., 29 Apr 2020, In : ACS Nano.

Research output: Contribution to journalArticle

Open Access

Specificity of bispecific T cell receptors and antibodies targeting peptide-HLA

Holland, C. J., Crean, R. M., Pentier, J. M., de Wet, B., Lloyd, A., Srikannathasan, V., Lissin, N., Lloyd, K. A., Blicher, T. H., Conroy, P. J., Hock, M., Pengelly, R. J., Spinner, T. E., Cameron, B., Potter, E. A., Jeyanthan, A., Molloy, P. E., Sami, M., Aleksic, M., Liddy, N. & 9 others, Robinson, R. A., Harper, S., Lepore, M., Pudney, C. R., van der Kamp, M. W., Rizkallah, P. J., Jakobsen, B. K., Vuidepot, A. & Cole, D. K., 1 May 2020, In : Journal of Clinical Investigation. 130, 5, p. 2673-2688 16 p.

Research output: Contribution to journalArticle

Structural and mechanistic insights into the Keap1-Nrf2 system as a route to drug discovery

Madden, S. K. & Itzhaki, L. S., 28 Feb 2020, In : Biochimica Et Biophysica Acta-Proteins and Proteomics. 1868, 7, 140405.

Research output: Contribution to journalReview article

Switching protein metalloporphyrin binding specificity by design from iron to fluorogenic zinc

Bowen, B. J., McGarrity, A. R., Szeto, J-Y. A., Pudney, C. R. & Jones, D. D., 21 Apr 2020, In : Chemical communications (Cambridge, England). 56, 31, p. 4308-4311 4 p.

Research output: Contribution to journalArticle

The ABC transporter DerAB of Lactobacillus casei mediates resistance against insect-derived defensins

Revilla-Guarinos, A., Zhang, Q., Loderer, C., Alcántara, C., Müller, A., Rahnamaeian, M., Vilcinskas, A., Gebhard, S., Zúñiga, M. & Mascher, T., 15 May 2020, In : Applied and Environmental Microbiology.

Research output: Contribution to journalArticle

The Aspergillus fumigatus Phosphoproteome Reveals Roles of High-Osmolarity Glycerol Mitogen-Activated Protein Kinases in Promoting Cell Wall Damage and Caspofungin Tolerance

Mattos, E. C., Silva, L. P., Valero, C., de Castro, P. A., Dos Reis, T. F., Ribeiro, L. F. C., Marten, M. R., Silva-Rocha, R., Westmann, C., da Silva, C. H. T. D. P., Taft, C. A., Al-Furaiji, N., Bromley, M., Mortensen, U. H., Benz, J. P., Brown, N. A. & Goldman, G. H., 1 Jan 2020, In : mBio. 11, 1, e02962-19.

Research output: Contribution to journalArticle

Open Access

The emergence of plasmid-borne cfr-mediated linezolid resistant-staphylococci in Vietnam

Nguyen, L. T. T., Nguyen, K. N. T., Le, P. N. T. A., Cafini, F., Pascoe, B., Sheppard, S. K., Nguyen, T. B., Hoang, T. P. N., Nguyen, T. V., Pham, T. T. K., Morikawa, K., Nguyen, D. Q. & Duong, H. X., 27 Apr 2020, In : Journal of Global Antimicrobial Resistance.

Research output: Contribution to journalArticle

Open Access

The emperor penguin - Vulnerable to projected rates of warming and sea ice loss

Trathan, P. N., Wienecke, B., Barbraud, C., Jenouvrier, S., Kooyman, G., Le Bohec, C., Ainley, D. G., Ancel, A., Zitterbart, D. P., Chown, S. L., Larue, M., Cristofari, R., Younger, J., Clucas, G., Bost, C., Brown, J. A., Gillett, H. J. & Fretwell, P. T., 31 Jan 2020, In : Biological Conservation. 241, 108216.

Research output: Contribution to journalReview article

Open Access
1 Citation (Scopus)

The origin and evolution of love

Longrich, N., 13 Feb 2020, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access

Tracking intracellular forces and changes to mechanical properties in mouse one-cell embryo development

Duch, M., Torras, N., Asami, M., Suzuki, T., Arjona, M., Gómez-Martínez, R., VerMilyea, M., Castilla, R., Plaza, J. A. & Perry, A., 25 May 2020, In : Nature Materials. 14 p., s41563-020-0685-9.

Research output: Contribution to journalArticle

Tumor-Agnostic Treatment for Cancer: When How is Better than Where

Lavacchi, D., Roviello, G. & D'Angelo, A., Jun 2020, In : Clinical Drug Investigation. 40, 6, p. 519-527

Research output: Contribution to journalReview article

Open Access
File
1 Downloads (Pure)

Unacceptable failures: the final report of the Lancet Commission into liver disease in the UK

Williams, R., Aithal, G., Alexander, G. J., Allison, M., Armstrong, I., Aspinall, R., Baker, A., Batterham, R., Brown, K., Burton, R., Cramp, M. E., Day, N., Dhawan, A., Drummond, C., Ferguson, J., Foster, G., Gilmore, I., Greenberg, J., Henn, C., Jarvis, H. & 19 others, Kelly, D., Mathews, M., McCloud, A., MacGilchrist, A., McKee, M., Moriarty, K., Morling, J., Newsome, P., Rice, P., Roberts, S., Rutter, H., Samyn, M., Severi, K., Sheron, N., Thorburn, D., Verne, J., Vohra, J., Williams, J. & Yeoman, A., 18 Jan 2020, In : The Lancet. 395, 10219, p. 226-239

Research output: Contribution to journalArticle

Open Access
File

Will humans go extinct? For all the existential threats, we’ll likely be here for a very long time

Longrich, N., 2020, The Conversation.

Research output: Contribution to specialist publicationArticle

2019

¿Qué ocurriría en la naturaleza si desaparecieran los insectos?

Reynolds, S., 24 Feb 2019, The Conversation.

Research output: Contribution to specialist publicationArticle

A boronic acid-based fluorescent hydrogel for monosaccharide detection

Xu, S., Sedgwick, A. C., Elfeky, S. A., Chen, W., Jones, A. S., Williams, G. T., Jenkins, A. T. A., Bull, S. D., Fossey, J. S. & James, T. D., 21 May 2019, In : Frontiers of Chemical Science and Engineering.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

A century of bias in genetics and evolution

Hurst, L., 12 Jun 2019, In : Heredity. 123, 1, p. 33-43 11 p.

Research output: Contribution to journalReview article

Open Access
File
24 Downloads (Pure)

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

Soneson, C., Yao, Y., Bratus-Neuenschwander, A., Patrignani, A., Robinson, M. D. & Hussain, S., 31 Jul 2019, In : Nature Communications. 10, 1, p. 1-14 14 p., 3359.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Adapting for life in the extreme

Kobras, C. M. & Falush, D., 15 Jul 2019, In : eLife. 8, e48999.

Research output: Contribution to journalArticle

Open Access

A gamma-thionin protein from apple, MdD1, is required for defence against S-RNase-induced inhibition of pollen tube prior to self/non-self recognition

Gu, Z., Li, W., Doughty, J., Meng, D., Yang, Q., Yuan, H., Li, Y., Chen, Q., Yu, J., Liu, C. S. & Li, T., 1 Nov 2019, In : Plant Biotechnology Journal. 17, 11, p. 2184-2198 15 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

A General Mechanism for Signal Propagation in the Nicotinic Acetylcholine Receptor Family

Oliveira, A. S. F., Edsall, C. J., Woods, C. J., Bates, P., Nunez, G. V., Wonnacott, S., Bermudez, I., Ciccotti, G., Gallagher, T., Sessions, R. B. & Mulholland, A. J., 26 Dec 2019, In : Journal of the American Chemical Society. 141, 51, p. 19953-19958 6 p.

Research output: Contribution to journalArticle

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

Soneson, C., Love, M. I., Patro, R., Hussain, S., Malhotra, D. & Robinson, M. D., 1 Feb 2019, In : Life Science Alliance. 2, 1, e201800175.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field

Jouet, A., Saunders, D. G. O., McMullan, M., Ward, B., Furzer, O., Jupe, F., Cevik, V., Hein, I., Thilliez, G. J. A., Holub, E., van Oosterhout, C. & Jones, J. D. G., 1 Feb 2019, In : New Phytologist. 221, 3, p. 1529-1543 15 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Alpha-Synuclein Structure and Parkinson's Disease – Lessons and Emerging Principles

Meade, R., Fairlie, D. P. & Mason, J., 22 Jul 2019, In : Molecular Neurodegeneration. 14, 1, p. 1-14 14 p., 29.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)
Open Access
1 Citation (Scopus)

A new species of Coloborhynchus (Pterosauria, Ornithocheiridae) from the mid-Cretaceous of North Africa

Jacobs, M. L., Martill, D. M., Ibrahim, N. & Longrich, N., 1 Mar 2019, In : Cretaceous Research. 95, p. 77-88

Research output: Contribution to journalArticle

7 Citations (Scopus)

An In Vitro Bladder Model for Studying Catheter- Associated Urinary Tract Infection and Associated Analysis of Biofilms

Nzakizwanayo, J., Pelling, H., Milo, S. & Jones, B., 16 Jul 2019, Proteus mirabilis - Methods and Protocols. Pearson, M. (ed.). Springer Nature, p. 139-158 20 p. (Methods in Molecular Biology; vol. 2021).

Research output: Chapter in Book/Report/Conference proceedingChapter

Archosauromorph extinction selectivity during the Triassic–Jurassic mass extinction

Puttick, M., Allen, B., Stubbs, T. L. & Benton, M. J., 1 Mar 2019, In : Palaeontology. 62, 2, p. 211-224 14 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana

Van de Weyer, A. L., Monteiro, F., Furzer, O. J., Nishimura, M. T., Cevik, V., Witek, K., Jones, J. D. G., Dangl, J. L., Weigel, D. & Bemm, F., 22 Aug 2019, In : Cell. 178, 5, p. 1260-1272.e14 13 p.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Aspergillus fumigatus calcium-responsive transcription factors regulate cell wall architecture promoting stress tolerance, virulence and caspofungin resistance

de Castro, P. A., Colabardini, A. C., Manfiolli, A. O., Chiaratto, J., Silva, L. P., Mattos, E. C., Palmisano, G., Almeida, F., Persinoti, G. F., Ries, L. N. A., Mellado, L., Rocha, M. C., Bromley, M., Silva, R. N., de Souza, G. S., Loures, F. V., Malavazi, I., Brown, N. A. & Goldman, G. H., 30 Dec 2019, In : Plos Genetics. 15, 12, e1008551.

Research output: Contribution to journalArticle

Open Access

Aspergillus fumigatushigh osmolarity glycerol mitogen activated protein kinases saka and mpkc physically interact during osmotic and cell wall stresses

Manfiolli, A. O., Mattos, E. C., De Assis, L. J., Silva, L. P., Ulas, M., Brown, N. A., Silva-Rocha, R., Bayram, Ö. & Goldman, G. H., 7 May 2019, In : Frontiers in Microbiology. 10, p. 1-17 17 p., 918.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Avelumab in gastric cancer

Roviello, G., D'Angelo, A., Generali, D., Pittacolo, M., Ganzinelli, M., Iezzi, G., Manzini, N. D. & Sobhani, N., 16 May 2019, In : Immunotherapy. 11, 9, p. 759-768 10 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
1 Downloads (Pure)

Bacterial biofilm formation on indwelling urethral catheters

Pelling, H., Nzakizwanayo, J., Milo, S., Denham, E. L., MacFarlane, W. M., Bock, L. J., Sutton, J. M. & Jones, B. V., 1 Apr 2019, In : Letters in Applied Microbiology. 68, 4, p. 277-293 17 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
8 Downloads (Pure)

Being in a loop: how long non-coding RNAs organise genome architecture

Pisignano, G., Pavlaki, I. & Murrell, A., 9 Apr 2019, In : Essays in Biochemistry. 63, 1, p. 177-186 10 p.

Research output: Contribution to journalReview article

Open Access
File
3 Citations (Scopus)
6 Downloads (Pure)

Biogeography of the fish pathogen Aeromonas salmonicida inferred by vapA genotyping

Gulla, S., Bayliss, S., Björnsdóttir, B., Dalsgaard, I., Haenen, O., Jansson, E., McCarthy, U., Scholz, F., Vercauteren, M., Verner-Jeffreys, D., Welch, T., Wiklund, T. & Colquhoun, D. J., 12 Apr 2019, In : FEMS Microbiology Letters. 366, 7, p. 1-7 7 p., fnz074.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Borrelia bavariensis: Vector Switch, Niche Invasion, and Geographical Spread of a Tick-Borne Bacterial Parasite

Margos, G., Fingerle, V. & Reynolds, S., 23 Oct 2019, In : Frontiers in Ecology and Evolution. 7, p. 1-20 20 p., 401.

Research output: Contribution to journalReview article

Open Access
1 Citation (Scopus)

Caput epididymidal mouse sperm support full development.

Zhou, D., Suzuki, T., Asami, M. & Perry, A., Jul 2019, In : Developmental Cell.

Research output: Contribution to journalLetter

6 Citations (Scopus)

Catalytic crosslinking-based methods for enzyme-specified profiling of RNA ribonucleotide modifications

Hussain, S., 1 Mar 2019, In : Methods. 156, p. 60-65 6 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
15 Downloads (Pure)

Characterization of melanosomes involved in the production of non-iridescent structural feather colours and their detection in the fossil record

Babarovic, F., Puttick, M. N., Zaher, M., Learmonth, E., Gallimore, E. J., Smithwick, F. M., Mayr, G. & Vinther, J., 28 Jun 2019, In : Journal of The Royal Society Interface. 16, 155, p. 1-9 9 p., 20180921.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Cigarette smoke exposure redirects Staphylococcus aureus to a virulence profile associated with persistent infection

Lacoma, A., Edwards, A. M., Young, B. C., Dominguez, J., Prat, C. & Laabei, M., 1 Dec 2019, In : Scientific Reports. 9, 1, 10798.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
Open Access
File
2 Citations (Scopus)
40 Downloads (Pure)
Open Access

Complete metamorphosis of insects

Rolff, J., Johnson, P. & Reynolds, S., 1 Oct 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1783, p. 1-8 8 p., 20190063.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Conditional expression explains molecular evolution of social genes in a microbe

de Oliveira, J. L., Morales, A. C., Stewart, B., Gruenheit, N., Engelmoer, J., Brown, S. B., de Brito, R. A., Hurst, L. D., Urrutia, A. O., Thompson, C. R. L. & Wolf, J. B., 23 Jul 2019, In : Nature Communications. 10, 1, p. 1-12 12 p., 3284.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Conserved transcriptomic profiles underpin monogamy across vertebrates

Young, R. L., Ferkin, M. H., Ockendon-Powell, N. F., Orr, V. N., Phelps, S. M., Pogány, Á., Richards-Zawacki, C. L., Summers, K., Székely, T., Trainor, B. C., Urrutia, A. O., Zachar, G., O’Connell, L. A. & Hofmann, H. A., 22 Jan 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 4, p. 1331-1336 6 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Controlled human infection with Bordetella pertussis induces asymptomatic, immunising colonisation

Preston, A., de Graaf, H., Ibrahim, M., Hill, A., Gbesemete, D., Vaughn, A., Gorringe, A., Buisman, A-M., Faust, S., Kester, K., Berbers, G., Diavotopoulos, D. & Read, R., 28 Sep 2019, In : Clinical Infectious Diseases. p. 1-35 35 p.

Research output: Contribution to journalArticle

Open Access

Cooking up the perfect insect: Aristotle's transformational idea about the complete metamorphosis of insects

Reynolds, S., 23 Aug 2019, In : Philosophical transactions B: Biological Sciences. 374, 1783, p. 1-16 16 p., 20190074.

Research output: Contribution to journalReview article

Open Access
File
4 Citations (Scopus)
43 Downloads (Pure)