Department of Biology & Biochemistry

Research Output

2020

5-hydroxymethylcytosine and gene activity in mouse intestinal differentiation

Uribe-Lewis, S., Carroll, T., Menon, S., Nicholson, A., Manasterski, P. J., Winton, D. J., Buczacki, S. J. A. & Murrell, A., 17 Jan 2020, In : Scientific Reports. 10, 1, 546.

Research output: Contribution to journalArticle

Open Access

ACE-domain selectivity extends beyond direct interacting residues at the active site

Cozier, G., Lubbe, L., Sturrock, E. & Acharya, R., 20 Mar 2020, In : Biochemical Journal.

Research output: Contribution to journalArticle

Open Access
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1 Downloads (Pure)

An overview of the clinical use of cabozantinib in the treatment of advanced non-clear-cell renal cell carcinoma (NCCRCC)

D'Angelo, A., Bagby, S., Di Pierro, G., Chirra, M., Nobili, S., Mini, E., Villari, D. & Roviello, G., 3 Mar 2020, In : Critical Reviews in Oncology/Hematology. 149, 102921.

Research output: Contribution to journalReview article

BceAB-type antibiotic resistance transporters appear to act by target protection of cell wall synthesis

Kobras, C. M., Piepenbreier, H., Emenegger, J., Sim, A., Fritz, G. & Gebhard, S., 13 Jan 2020, In : Antimicrobial Agents and Chemotherapy.

Research output: Contribution to journalArticle

Open Access
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3 Downloads (Pure)

Breeding ecology of the Cream-coloured Courser in Cape Verde

Rice, R., Valdebenito, J. O., Ottensmann, M., Engel, N., Adrião, A. & Székely, T., 5 Mar 2020, In : Ostrich. 91, 1, p. 65-73

Research output: Contribution to journalArticle

Open Access

Charcot-Leyden Crystal Protein/Galectin-10 Interacts with Cationic Ribonucleases and is Required for Eosinophil Granulogenesis.

Grozdanovic, M., Doyle, C., Lu, L., Maybruck, B., Kwatia, M., Thiyagarajan, N., Acharya, R. & Ackerman, S., 23 Jan 2020, In : Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

Coupling Computational and Intracellular Screening and Selection Towards Co-compatible cJun and cFos Antagonists

Lathbridge, A., Michalowska, A. & Mason, J., 4 Feb 2020, In : Biochemistry. 59, 4, p. 530-540

Research output: Contribution to journalArticle

Open Access
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Open Access

Detailed analysis of paternal knockout Grb10 mice suggests effects on stability of social behavior, rather than social dominance

Rienecker, K. D. A., Chavasse, A. T., Moorwood, K., Ward, A. & Isles, A. R., 1 Jan 2020, In : Genes, Brain and Behavior. 19, 1, e12571.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Disrupted gene networks in subfertile hybrid house mice

Morgan, K., Harr, B., White, M. A., Payseur, B. A. & Turner, L., 12 Jan 2020, In : Molecular Biology and Evolution.

Research output: Contribution to journalArticle

Open Access

Enzymatic Ligation of a Pore Blocker Toxin and a Gating Modifier Toxin: Creating Double-Knotted Peptides with Improved Sodium Channel Na V1.7 Inhibition

Tran, H., Tran, P., Deuis, J. R., Agwa, A. J., Zhang, A. H., Vetter, I. & Schroeder, C. I., 15 Jan 2020, In : Bioconjugate Chemistry. 31, 1, p. 64-73 10 p.

Research output: Contribution to journalArticle

First evidence for a latitudinal body mass effect in extant Crocodylia and the relationships of their reproductive characters

Lakin, R., Barrett, P. M., Stevenson, C., Thomas, R. J. & Wills, M., 21 Jan 2020, In : Biological Journal of the Linnean Society. blz208.

Research output: Contribution to journalArticle

From modules to networks: A systems-­level analysis of the bacitracin stress response in Bacillus subtilis

Piepenbreier, H., Sim, A., Kobras, C. M., Radeck, J., Mascher, T., Gebhard, S. & Fritz, G., 4 Feb 2020, In : mSystems. 5, 1, e00687-19.

Research output: Contribution to journalArticle

Open Access
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2 Downloads (Pure)

High Aspect Ratio-Nanostructured Surfaces as Biological Metamaterials

Higgins, S., Becce, M., Belessiotis-Richards, A., Seong, H., Sero, J. & Stevens, M., 5 Mar 2020, In : Advanced Materials. 32, 9, 1903862.

Research output: Contribution to journalReview article

How the extinction of ice age mammals may have forced us to invent civilisation

Longrich, N., 3 Jan 2020, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access

Immune Checkpoint Inhibitors in Pre-Treated Gastric Cancer Patients: Results from a Literature-Based Meta-Analysis

Roviello, G., Corona, S. P., D'Angelo, A., Rosellini, P., Nobili, S. & Mini, E., 10 Jan 2020, In : International Journal of Molecular Sciences. 21, 2, 448.

Research output: Contribution to journalArticle

Open Access

Integrating transposable elements in the 3D genome

Bousios, A., Nützmann, H. W., Buck, D. & Michieletto, D., 4 Feb 2020, In : Mobile DNA. 11, 1, 8.

Research output: Contribution to journalReview article

Open Access

Interaction of Streptococcus pyogenes with extracellular matrix components resulting in immunomodulation and bacterial eradication

Colineau, L., Laabei, M., Liu, G., Ermert, D., Lambris, J. D., Riesbeck, K. & Blom, A. M., 13 Jan 2020, In : Matrix Biology Plus . 10020.

Research output: Contribution to journalArticle

Open Access

Manipulation of a spider peptide toxin alters its affinity for lipid bilayers and potency and selectivity for voltage-gated sodium channel subtype 1.7

Agwa, A. J., Tran, P., Mueller, A., Tran, H. N. T., Deuis, J. R., Israel, M. R., Mcmahon, K. L., Craik, D. J., Vetter, I. & Schroeder, C. I., 5 Mar 2020, In : Journal of Biological Chemistry. jbc.RA119.012281.

Research output: Contribution to journalArticle

Mapping the Molecular Surface of the Analgesic NaV1.7-Selective Peptide Pn3a Reveals Residues Essential for Membrane and Channel Interactions

Mueller, A., Dekan, Z., Kaas, Q., Agwa, A. J., Starobova, H., Alewood, P. F., Schroeder, C. I., Mobli, M., Deuis, J. R. & Vetter, I., 19 Feb 2020, In : ACS Pharmacology & Translational Science.

Research output: Contribution to journalArticle

MOTMOT: Models of trait macroevolution on trees (an update)

Puttick, M. N., Ingram, T., Clarke, M. & Thomas, G. H., 1 Mar 2020, In : Methods in Ecology and Evolution. 11, 3, p. 464-471 8 p.

Research output: Contribution to journalArticle

New toothed pterosaurs (Pterosauria: Ornithocheiridae) from the middle Cretaceous Kem Kem beds of Morocco and implications for pterosaur palaeobiogeography and diversity

Jacobs, M. L., Martill, D. M., Unwin, D. M., Ibrahim, N., Zouhri, S. & Longrich, N. R., 19 Feb 2020, In : Cretaceous Research. 104413.

Research output: Contribution to journalArticle

On a new proposed mechanism of 5-fluorouracil-mediated cytotoxicity

Hussain, S., 13 Mar 2020, In : Trends in Cancer.

Research output: Contribution to journalArticle

Peptide cargo tunes a network of correlated motions in human leukocyte antigens

Hopkins, J. R., Crean, R. M., Catici, D. A. M., Sewell, A. K., Arcus, V. L., Van der Kamp, M. W., Cole, D. K. & Pudney, C. R., 5 Mar 2020, In : FEBS Journal.

Research output: Contribution to journalArticle

Pilot-scale production of xylo-oligosaccharides and fermentable sugars from Miscanthus using steam explosion pretreatment

Bhatia, R., Winters, A., Bryant, D. N., Bosch, M., Clifton-Brown, J., Leak, D. & Gallagher, J., 1 Jan 2020, In : Bioresource Technology. 296, 122285.

Research output: Contribution to journalArticle

Open Access

Population differentiation and historical demography of the threatened snowy plover Charadrius nivosus (Cassin, 1858)

D’Urban Jackson, J., Bruford, M. W., Székely, T., DaCosta, J. M., Sorenson, M. D., Russo, I. R. M., Maher, K. H., Cruz-López, M., Galindo-Espinosa, D., Palacios, E., De Sucre-Medrano, A. E., Cavitt, J., Pruner, R., Morales, A. L., Gonzalez, O., Burke, T. & Küpper, C., 28 Feb 2020, In : Conservation Genetics.

Research output: Contribution to journalArticle

Open Access

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

Břinda, K., Callendrello, A., Ma, K. C., MacFadden, D. R., Charalampous, T., Lee, R. S., Cowley, L., Wadsworth, C. B., Grad, Y. H., Kucherov, G., O’Grady, J., Baym, M. & Hanage, W. P., 1 Mar 2020, In : Nature Microbiology. 5, 3, p. 455-464 10 p.

Research output: Contribution to journalArticle

Open Access

Segregation distortion: Utilizing simulated genotyping data to evaluate statistical methods

Coulton, A., Przewieslik-Allen, A. M., Burridge, A. J., Shaw, D. S., Edwards, K. J. & Barker, G. L. A., 19 Feb 2020, In : PLoS ONE. 15, 2, p. e0228951

Research output: Contribution to journalArticle

Open Access

Single molecule imaging reveals cFos is capable of binding to and diffusing on DNA tightropes independently of cJun

Leech, J. T., Don, N. A., Mason, J. M. & Kad, N. M., 2020, (Unpublished) In : bioRxiv.

Research output: Contribution to journalArticle

The Aspergillus fumigatus Phosphoproteome Reveals Roles of High-Osmolarity Glycerol Mitogen-Activated Protein Kinases in Promoting Cell Wall Damage and Caspofungin Tolerance

Mattos, E. C., Silva, L. P., Valero, C., de Castro, P. A., Dos Reis, T. F., Ribeiro, L. F. C., Marten, M. R., Silva-Rocha, R., Westmann, C., da Silva, C. H. T. D. P., Taft, C. A., Al-Furaiji, N., Bromley, M., Mortensen, U. H., Benz, J. P., Brown, N. A. & Goldman, G. H., 1 Jan 2020, In : mBio. 11, 1, e02962-19.

Research output: Contribution to journalArticle

Open Access

The emperor penguin - Vulnerable to projected rates of warming and sea ice loss

Trathan, P. N., Wienecke, B., Barbraud, C., Jenouvrier, S., Kooyman, G., Le Bohec, C., Ainley, D. G., Ancel, A., Zitterbart, D. P., Chown, S. L., Larue, M., Cristofari, R., Younger, J., Clucas, G., Bost, C., Brown, J. A., Gillett, H. J. & Fretwell, P. T., 31 Jan 2020, In : Biological Conservation. 241, 108216.

Research output: Contribution to journalReview article

Open Access

The origin and evolution of love

Longrich, N., 13 Feb 2020, The Conversation.

Research output: Contribution to specialist publicationArticle

Unacceptable failures: the final report of the Lancet Commission into liver disease in the UK

Williams, R., Aithal, G., Alexander, G. J., Allison, M., Armstrong, I., Aspinall, R., Baker, A., Batterham, R., Brown, K., Burton, R., Cramp, M. E., Day, N., Dhawan, A., Drummond, C., Ferguson, J., Foster, G., Gilmore, I., Greenberg, J., Henn, C., Jarvis, H. & 19 others, Kelly, D., Mathews, M., McCloud, A., MacGilchrist, A., McKee, M., Moriarty, K., Morling, J., Newsome, P., Rice, P., Roberts, S., Rutter, H., Samyn, M., Severi, K., Sheron, N., Thorburn, D., Verne, J., Vohra, J., Williams, J. & Yeoman, A., 18 Jan 2020, In : The Lancet. 395, 10219, p. 226-239

Research output: Contribution to journalArticle

2019

¿Qué ocurriría en la naturaleza si desaparecieran los insectos?

Reynolds, S., 24 Feb 2019, The Conversation.

Research output: Contribution to specialist publicationArticle

A boronic acid-based fluorescent hydrogel for monosaccharide detection

Xu, S., Sedgwick, A. C., Elfeky, S. A., Chen, W., Jones, A. S., Williams, G. T., Jenkins, A. T. A., Bull, S. D., Fossey, J. S. & James, T. D., 21 May 2019, In : Frontiers of Chemical Science and Engineering.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

A century of bias in genetics and evolution

Hurst, L., 12 Jun 2019, In : Heredity. 123, 1, p. 33-43 11 p.

Research output: Contribution to journalReview article

Open Access
File
11 Downloads (Pure)

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

Soneson, C., Yao, Y., Bratus-Neuenschwander, A., Patrignani, A., Robinson, M. D. & Hussain, S., 31 Jul 2019, In : Nature Communications. 10, 1, p. 1-14 14 p., 3359.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Adapting for life in the extreme

Kobras, C. M. & Falush, D., 15 Jul 2019, In : eLife. 8, e48999.

Research output: Contribution to journalArticle

Open Access

A gamma-thionin protein from apple, MdD1, is required for defence against S-RNase-induced inhibition of pollen tube prior to self/non-self recognition

Gu, Z., Li, W., Doughty, J., Meng, D., Yang, Q., Yuan, H., Li, Y., Chen, Q., Yu, J., Liu, C. S. & Li, T., 1 Nov 2019, In : Plant Biotechnology Journal. 17, 11, p. 2184-2198 15 p.

Research output: Contribution to journalArticle

Open Access

A General Mechanism for Signal Propagation in the Nicotinic Acetylcholine Receptor Family

Oliveira, A. S. F., Edsall, C. J., Woods, C. J., Bates, P., Nunez, G. V., Wonnacott, S., Bermudez, I., Ciccotti, G., Gallagher, T., Sessions, R. B. & Mulholland, A. J., 26 Dec 2019, In : Journal of the American Chemical Society. 141, 51, p. 19953-19958 6 p.

Research output: Contribution to journalArticle

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

Soneson, C., Love, M. I., Patro, R., Hussain, S., Malhotra, D. & Robinson, M. D., 1 Feb 2019, In : Life Science Alliance. 2, 1, e201800175.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field

Jouet, A., Saunders, D. G. O., McMullan, M., Ward, B., Furzer, O., Jupe, F., Cevik, V., Hein, I., Thilliez, G. J. A., Holub, E., van Oosterhout, C. & Jones, J. D. G., 1 Feb 2019, In : New Phytologist. 221, 3, p. 1529-1543 15 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Alpha-Synuclein Structure and Parkinson's Disease – Lessons and Emerging Principles

Meade, R., Fairlie, D. P. & Mason, J., 22 Jul 2019, In : Molecular Neurodegeneration. 14, 1, p. 1-14 14 p., 29.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
Open Access
1 Citation (Scopus)

A new species of Coloborhynchus (Pterosauria, Ornithocheiridae) from the mid-Cretaceous of North Africa

Jacobs, M. L., Martill, D. M., Ibrahim, N. & Longrich, N., 1 Mar 2019, In : Cretaceous Research. 95, p. 77-88

Research output: Contribution to journalArticle

5 Citations (Scopus)

An In Vitro Bladder Model for Studying Catheter- Associated Urinary Tract Infection and Associated Analysis of Biofilms

Nzakizwanayo, J., Pelling, H., Milo, S. & Jones, B., 16 Jul 2019, Proteus mirabilis - Methods and Protocols. Pearson, M. (ed.). Springer Nature, p. 139-158 20 p. (Methods in Molecular Biology; vol. 2021).

Research output: Chapter in Book/Report/Conference proceedingChapter

Archosauromorph extinction selectivity during the Triassic–Jurassic mass extinction

Puttick, M., Allen, B., Stubbs, T. L. & Benton, M. J., 1 Mar 2019, In : Palaeontology. 62, 2, p. 211-224 14 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)