Research Output 1977 2020

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2014
13 Citations (Scopus)
114 Downloads (Pure)

Positive charge loading at protein termini is due to membrane protein topology, not a translational ramp

Charneski, C. A. & Hurst, L. D., Jan 2014, In : Molecular Biology and Evolution. 31, 1, p. 70-84 15 p.

Research output: Contribution to journalArticle

Open Access
File
Architectural Accessibility
membrane proteins
topology
Membrane Proteins
membrane
6 Citations (Scopus)
111 Downloads (Pure)

Positive state controllability of positive linear systems

Guiver, C., Hodgson, D. & Townley, S., Mar 2014, In : Systems & Control Letters. 65, 1, p. 23-29 7 p.

Research output: Contribution to journalArticle

Open Access
File
Controllability
Linear systems
76 Citations (Scopus)
59 Downloads (Pure)

Predicting the virulence of MRSA from its genome sequence

Laabei, M., Recker, M., Rudkin, J. K., Aldeljawi, M., Gulay, Z., Sloan, T. J., Williams, P., Endres, J. L., Bayles, K. W., Fey, P. D., Yajjala, V. K., Widhelm, T., Hawkins, E., Lewis, K., Parfett, S., Scowen, L., Peacock, S. J., Holden, M., Wilson, D., Read, T. D. & 6 others, Van Den Elsen, J., Priest, N. K., Feil, E. J., Hurst, L. D., Josefsson, E. & Massey, R. C., 1 May 2014, In : Genome Research. 24, 5, p. 839-849 11 p.

Research output: Contribution to journalArticle

Open Access
164 Citations (Scopus)
169 Downloads (Pure)

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells

Wang, J., Xie, G., Singh, M., Tashakkori Ghanbarian, A., Raskó, T., Szvetnik, A., Cai, H., Besser, D., Prigione, A., Fuchs, N. V., Schumann, G. G., Chen, W., Lorincz, M. C., Ivics, Z., Hurst, L. D. & Izsvák, Z., 18 Dec 2014, In : Nature. 516, 7531, p. 405-409 5 p.

Research output: Contribution to journalArticle

Open Access
File
Endogenous Retroviruses
Primates
Stem Cells
Long Noncoding RNA
Therapeutic Human Experimentation
24 Citations (Scopus)

Purifying selection on splice-related motifs, not expression level nor RNA folding, explains nearly all constraint on human lincRNAs

Schüler, A., Ghanbarian, A. T. & Hurst, L. D., 1 Dec 2014, In : Molecular Biology and Evolution. 31, 12, p. 3164-3183 20 p.

Research output: Contribution to journalArticle

Open Access
RNA Folding
Long Noncoding RNA
folding
RNA
Chromatin
20 Citations (Scopus)
108 Downloads (Pure)

Quantitative genetic versions of Hamilton's rule with empirical applications

McGlothlin, J. W., Wolf, J. B., Brodie III, E. D. & Moore, A. J., May 2014, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 369, 1642, 20130358.

Research output: Contribution to journalArticle

Open Access
File
quantitative genetics
Altruism
Social Environment
Interpersonal Relations
Cost-Benefit Analysis
1 Citation (Scopus)
102 Downloads (Pure)

Replicators, lineages, and interactors

Taylor, D. & Bryson, J. J., Jun 2014, In : Behavioral and Brain Sciences. 37, 3, p. 276-277 2 p.

Research output: Contribution to journalArticle

Open Access
File
Cultural Evolution
Food Handling
Group Processes
16 Citations (Scopus)

Seasonal invasion dynamics in a spatially heterogeneous river with fluctuating flows

Jin, Y., Hilker, F. M., Steffler, P. M. & Lewis, M. A., Jul 2014, In : Bulletin of Mathematical Biology. 76, 7, p. 1522-1565

Research output: Contribution to journalArticle

Ratchet
Invasion
Rivers
Population Dynamics
Hydrodynamics
54 Citations (Scopus)

Sex-biased survival predicts adult sex ratio variation in wild birds

Szekely, T., Liker, A., Freckleton, R. P., Fichtel, C. & Kappeler, P. M., 25 Jun 2014, In : Proceedings of the Royal Society B: Biological Sciences. 281, 1788, 20140342.

Research output: Contribution to journalArticle

Population dynamics
Biodiversity
Sex Ratio
Birds
wild birds
13 Citations (Scopus)
Parents
Feedback
Experiments
Parenting
Social Behavior
23 Citations (Scopus)

Social role specialization promotes cooperation between parents

Barta, Z., Székely, T., Liker, A. & Harrison, F., 2014, In : American Naturalist. 183, 6, p. 747-761 15 p.

Research output: Contribution to journalArticle

parental care
gender
cost
asymmetry
mechanistic models
22 Citations (Scopus)
54 Downloads (Pure)

Sox5 Functions as a Fate Switch in Medaka Pigment Cell Development

Nagao, Y., Suzuki, T., Shimizu, A., Kimura, T., Seki, R., Adachi, T., Inoue, C., Omae, Y., Kamei, Y., Hara, I., Taniguchi, Y., Naruse, K., Wakamatsu, Y., Kelsh, R. N., Hibi, M. & Hashimoto, H., 30 Apr 2014, In : Plos Genetics. 10, 4, p. 1-14 14 p., e1004246.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Stabilizing populations with adaptive limiters: Prospects and fallacies

Franco, D. & Hilker, F. M., 2014, In : SIAM Journal on Applied Dynamical Systems. 13, 1, p. 447-465 19 p.

Research output: Contribution to journalArticle

Limiter
Limiters
Adaptive Threshold
Fluctuations
Population Size
44 Citations (Scopus)
102 Downloads (Pure)

Stochastic pattern formation and spontaneous polarisation: The linear noise approximation and beyond

McKane, A. J., Biancalani, T. & Rogers, T., Apr 2014, In : Bulletin of Mathematical Biology. 76, 4, p. 895-921

Research output: Contribution to journalArticle

File
Turing Instability
Stochasticity
Polarity
Biological systems
Pattern Formation
50 Citations (Scopus)
98 Downloads (Pure)

The evolution of genomic imprinting: Theories, predictions and empirical tests

Patten, M. M., Ross, L., Curley, J. P., Queller, D. C., Bonduriansky, R. & Wolf, J. B., Aug 2014, In : Heredity. 113, 2, p. 119-128 10 p.

Research output: Contribution to journalArticle

Open Access
File
Genomic Imprinting
Gene Dosage
Mothers
Epigenomics
Alleles
1 Citation (Scopus)

The puzzling affinity between modularity and dependence asymmetry

Corso, G. & Britton, N. F., 1 Dec 2014, In : Ecological Complexity. 20, p. 195-200 6 p.

Research output: Contribution to journalArticle

community ecology
asymmetry
generalist
6 Citations (Scopus)
113 Downloads (Pure)

The Swift–Hohenberg equation with a nonlocal nonlinearity

Morgan, D. & Dawes, J. H. P., 1 Mar 2014, In : Physica D: Nonlinear Phenomena. 270, p. 60-80 21 p.

Research output: Contribution to journalArticle

Open Access
File
nonlinearity
envelopes
kernel functions
derivation
lateral oscillation
7 Citations (Scopus)
99 Downloads (Pure)
Open Access
File
Capillary-gravity Waves
capillary waves
Solitary Waves
Gravity
Gravitation
10 Citations (Scopus)
97 Downloads (Pure)

Unbiased shifts of Brownian motion

Last, G., Morters, P. & Thorisson, H., Mar 2014, In : Annals of Probability. 42, 2, p. 431-463 30 p.

Research output: Contribution to journalArticle

Open Access
File
Brownian motion
Random Measure
Balancing
Stopping Time
Minimality
28 Citations (Scopus)

Use of a natural hybrid zone for genomewide association mapping of craniofacial traits in the house mouse

Pallares, L. F., Harr, B., Turner, L. M. & Tautz, D., Dec 2014, In : Molecular Ecology. 23, 23, p. 5756-5770 15 p.

Research output: Contribution to journalArticle

Open Access
hybrid zone
Mus musculus
chromosome mapping
Mandible
Skull
116 Downloads (Pure)
Open Access
File
likelihood ratio
tendencies
geometry
inference
estimators
8 Citations (Scopus)
69 Downloads (Pure)

Vulnerability of robust preferential attachment networks

Eckhoff, M. & Morters, P., 5 Jul 2014, In : Electronic Journal of Probability. 19, p. 1-47 57.

Research output: Contribution to journalArticle

Open Access
File
Preferential Attachment
Vulnerability
Proportion
Vertex of a graph
Topological Structure
7 Citations (Scopus)

When are first order asymptotics adequate? A diagnostic

Anaya Izquierdo, K. A., Critchley, F. & Marriott, P., Feb 2014, In : Stat. 3, 1, p. 17-22 6 p.

Research output: Contribution to journalArticle

Diagnostics
First-order
Collinearity
Boundary Effect
Asymptotic Methods
2013
29 Citations (Scopus)
97 Downloads (Pure)

A competitive protein interaction network buffers Oct4-mediated differentiation to promote pluripotency in embryonic stem cells

Munoz-Descalzo, S., Rue, P., Faunes, F., Hayward, P., Jakt, L. M., Balayo, T., Garcia-Ojalvo, J. & Martinez Arias, A., 2013, In : Molecular Systems Biology. 9, 1, p. 694 1 p.

Research output: Contribution to journalArticle

Open Access
File
Protein Interaction Maps
Stem Cells
Protein Interaction Networks
embryonic stem cells
Embryonic Stem Cells
1 Citation (Scopus)

Acoustic signalling in eurasian penduline tits remiz pendulinus: Repertoire size signals male nest defence

Pogány, A., van Dijk, R. E., Menyhárt, O., Miklósi, A., DeVoogd, T. J. & Székely, T., 2013, In : Acta Zoologica Academiae Scientiarum Hungaricae. 59, 1, p. 81-96 16 p.

Research output: Contribution to journalArticle

acoustics
nests
animal communication
communication (human)
polygamy
11 Citations (Scopus)

Adaptive limiter control of unimodal population maps

Franco, D. & Hilker, F. M., 21 Nov 2013, In : Journal of Theoretical Biology. 337, p. 161-173 13 p.

Research output: Contribution to journalArticle

Limiter
Limiters
Population
Population Density
Drosophila melanogaster
39 Citations (Scopus)

A derivation of Holling's type I, II and III functional responses in predator-prey systems

Dawes, J. H. P. & Souza, M. O., Jun 2013, In : Journal of Theoretical Biology. 327, 1, p. 11-22 12 p.

Research output: Contribution to journalArticle

Predator prey systems
Functional Response
Predator-prey System
functional response models
Prey
63 Citations (Scopus)

AID stabilizes stem-cell phenotype by removing epigenetic memory of pluripotency genes

Kumar, R., DiMenna, L., Schrode, N., Liu, T., Franck, P., Muñoz-descalzo, S., Hadjantonakis, A-K., Zarrin, A. A., Chaudhuri, J., Elemento, O. & Evans, T., 1 Aug 2013, In : Nature. 500, p. 89-92

Research output: Contribution to journalArticle

Epigenomics
Stem Cells
Phenotype
Genes
Null Lymphocytes
77 Citations (Scopus)

A membrane-associated β-catenin/Oct4 complex correlates with ground-state pluripotency in mouse embryonic stem cells

Faunes, F., Hayward, P., Munoz-Descalzo, S., Chatterjee, S. S., Balayo, T., Trott, J. (Translator), Christoforou, A., Ferrer-Vaquer, A., Hadjantonakis, A-K., Dasgupta, R. & Martinez Arias, A., 15 Mar 2013, In : Development. 2013, 140, p. 1171-1183

Research output: Contribution to journalArticle

28 Citations (Scopus)
95 Downloads (Pure)

Anaplastic Lymphoma Kinase is required for neurogenesis in the developing central nervous system of zebrafish

Yao, S., Cheng, M., Zhang, Q., Wasik, M., Kelsh, R. & Winkler, C., 10 May 2013, In : PLoS ONE. 8, 5, e63757.

Research output: Contribution to journalArticle

Open Access
File
neurogenesis
Neurogenesis
Neurology
Zebrafish
lymphoma
7 Citations (Scopus)
Chlamydia Infections
Chlamydia
Infection
Optimal Control
Contact Tracing
6 Citations (Scopus)

Areas of high diversity for the world's inland-breeding waterbirds

Williamson, L., Hudson, M., O'Connell, M., Davidson, N., Young, R., Amano, T. & Székely, T., Jun 2013, In : Biodiversity and Conservation. 22, 6-7, p. 1501-1512 12 p.

Research output: Contribution to journalArticle

water birds
breeding
protected area
wetland
conservation areas
14 Citations (Scopus)
101 Downloads (Pure)

Are there species smaller than 1 mm?

G. Rossberg, A., Rogers, T. & McKane, A. J., 22 Sep 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1767, 20131248.

Research output: Contribution to journalArticle

Open Access
File
Biodiversity
Mutation Rate
Population Density
meiofauna
Genome
16 Citations (Scopus)

A systematic survey of expression and function of zebrafish frizzled genes

Nikaido, M., Law, E. W. P. & Kelsh, R. N., 29 Jan 2013, In : PLoS ONE. 8, 1, 54833.

Research output: Contribution to journalArticle

Neural Crest
Melanocytes
Zebrafish
Danio rerio
neural crest
2 Citations (Scopus)
90 Downloads (Pure)
Open Access
File
Balanced Truncation
Infinite-dimensional Systems
Error Bounds
Singular Values
Gap Metric
24 Citations (Scopus)
112 Downloads (Pure)

Characterization of a Regulatory Network of Peptide Antibiotic Detoxification Modules in Lactobacillus casei BL23

Revilla-Guarinos, A., Gebhard, S., Alcantara, C., Staron, A., Mascher, T. & Zuniga, M., 15 May 2013, In : Applied and Environmental Microbiology. 79, 10, p. 3160-3170

Research output: Contribution to journalArticle

Open Access
File
101 Citations (Scopus)

Clades reach highest morphological disparity early in their evolution

Hughes, M., Gerber, S. & Wills, M. A., 20 Aug 2013, In : Proceedings of the National Academy of Sciences of the United States of America (PNAS). 110, 34, p. 13875-13879 5 p.

Research output: Contribution to journalArticle

mass extinction
gravity
Phanerozoic
metazoan
meta-analysis
2 Citations (Scopus)
101 Downloads (Pure)

Comment on "Bateman in nature: Predation on offspring reduces the potential for sexual selection"

Ramm, S. A., Jonker, R. M., Reinhold, K., Székely, T., Trillmich, F., Schmoll, T., Schielzeth, H. & Freckleton, R. P., 3 May 2013, In : Science. 340, 6132, p. 549

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
3 Citations (Scopus)

Comments on 'Log transformation: Application and interpretation in biomedical research'

Alexander, N. & Anaya-Izquierdo, K., 20 Sep 2013, In : Statistics in medicine. 32, 21, p. 3768-3769 2 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Complex dynamics in an eco-epidemiological model

Bate, A. M. & Hilker, F. M., Nov 2013, In : Bulletin of Mathematical Biology. 75, 11, p. 2059-2078 20 p.

Research output: Contribution to journalArticle

Epidemiological Model
Complex Dynamics
Limit Cycle
Torus
saddles
20 Citations (Scopus)
101 Downloads (Pure)

Consensus time and conformity in the adaptive voter model

Rogers, T. C. & Gross, T., 6 Sep 2013, In : Physical Review E. 88, 3, 030102.

Research output: Contribution to journalArticle

Open Access
File
Voter Model
Dynamical Phase Transition
Opinion Formation
Phenomenology
Scaling Behavior
2 Citations (Scopus)

Distributed quality of service provision using coalitions and the nash bargaining solution

Vatsikas, S., Armour, S., Lewis, T. & De Vos, M., 5 Mar 2013, In : IET Communications. 7, 4, p. 340-348 9 p.

Research output: Contribution to journalArticle

Quality of service
Outages
20 Citations (Scopus)

Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses

Woods, S., Coghlan, A., Rivers, D., Warnecke, T., Jeffries, S. J., Kwon, T., Rogers, A., Hurst, L. & Ahringer, J., 9 May 2013, In : Plos Genetics. 9, 5, e1003330.

Research output: Contribution to journalArticle

phenotype
Phenotype
gene
Genes
genes
9 Citations (Scopus)
119 Downloads (Pure)
Open Access
File
Dielectric Spectroscopy
Iontophoresis
Nails
Permeation
Hydration
9 Citations (Scopus)
94 Downloads (Pure)

Emergence of condensation in Kingman's model of selection and mutation

Dereich, S. & Morters, P., Oct 2013, In : Acta Applicandae Mathematicae. 127, 1, p. 17-26 10 p.

Research output: Contribution to journalArticle

Open Access
File
Condensation
Mutation
Scaling Limit
Gamma distribution
Limit Theorems
4 Citations (Scopus)

Error bounds in the gap metric for dissipative balanced approximations

Guiver, C. & Opmeer, M. R., 15 Dec 2013, In : Linear Algebra and its Applications. 439, 12, p. 3659–3698

Research output: Contribution to journalArticle

Gap Metric
Balanced Truncation
Error Bounds
Approximation
Decomposition
6 Citations (Scopus)

Estimation of basic reproduction numbers: Individual heterogeneity and robustness to perturbation of the contact function

Farrington, C. P., Unkel, S. & Anaya-Izquierdo, K., Jul 2013, In : Biostatistics . 14, 3, p. 528-40 13 p.

Research output: Contribution to journalArticle

Basic Reproduction number
Frailty
Infection
Contact
Robustness
5 Citations (Scopus)
103 Downloads (Pure)

Evidence for deep phylogenetic conservation of exonic splice-related constraints: Splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans

Wu, X., Tronholm, A., Fernandez Cáceres, E., Tovar-Corona, J. M., Chen, L., Urrutia, A. O. & Hurst, L. D., 2013, In : Genome biology and evolution. 5, 9, p. 1731-1745 15 p.

Research output: Contribution to journalArticle

Open Access
File
Phaeophyta
Phaeophyceae
brown alga
codons
Codon
24 Citations (Scopus)
genomic imprinting
gene expression
genes
alleles
loci