Research Output 1977 2020

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2016
3 Citations (Scopus)
101 Downloads (Pure)

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
Cross Infection
DNA Sequence Analysis
Virulence
Software
Bacteria
5 Citations (Scopus)
100 Downloads (Pure)

Branching brownian motion in a strip: survival near criticality

Harris, S., Hesse, M. & Kyprianou, A., Jan 2016, In : Annals of Probability. 44, 1, p. 235-275 51 p.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Criticality
Strip
Spine
Backbone
11 Citations (Scopus)
111 Downloads (Pure)

Cannibalism stress response in Bacillus subtilis

Höfler, C., Heckmann, J., Fritsch, A., Popp, P., Gebhard, S., Fritz, G. & Mascher, T., Jan 2016, In : Microbiology. 162, 1, p. 164-176

Research output: Contribution to journalArticle

Open Access
File
Cannibalism
Bacillus subtilis
Sigma Factor
Cell Survival
Soil
3 Citations (Scopus)
76 Downloads (Pure)

CBA: a cluster-based client/server data aggregation routing protocol

Pourroostaei Ardakani, S., Padget, J. & De Vos, M., 1 Nov 2016, In : Ad Hoc Networks. 50, p. 68-87

Research output: Contribution to journalArticle

Open Access
File
Routing protocols
Servers
Agglomeration
Energy utilization
Hamming distance

Cheating is more society’s problem than an affair of the heart

Szekely, T., 17 Feb 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
1 Citation (Scopus)
26 Downloads (Pure)

Chevron folding patterns and heteroclinic orbits

Budd, C. J., Chakhchoukh, A. N., Dodwell, T. J. & Kuske, R., 1 Sep 2016, In : Physica D: Nonlinear Phenomena. 330, p. 32-46 15 p.

Research output: Contribution to journalArticle

Open Access
File
limbs
folding
orbits
elastic media
systems analysis
46 Citations (Scopus)
72 Downloads (Pure)

Clarification of mural cell coverage of vascular endothelial cells by live imaging of zebrafish

Ando, K., Fukuhara, S., Izumi, N., Nakajima, H., Fukui, H., Kelsh, R. N. & Mochizuki, N., 19 Apr 2016, In : Development. 143, 8, p. 1328-1339 12 p.

Research output: Contribution to journalArticle

Open Access
File
Zebrafish
Endothelial Cells
Intercellular Junctions
Mesoderm
Blood Vessels
10 Citations (Scopus)
tetrapod
skeleton
fish
tree yields
phylogenetics
2 Citations (Scopus)
131 Downloads (Pure)

Comparison of drug release from poly(lactide-co-glycolide) microspheres and novel fibre formulations

Campbell, C. S. J., Delgado-Charro, M. B., Camus, O. & Perera, S., 1 Mar 2016, In : Journal of Biomaterials Applications. 30, 8, p. 1142-1153 12 p.

Research output: Contribution to journalArticle

Open Access
File
Polyglactin 910
Microspheres
Cisplatin
Fibers
Pharmaceutical Preparations
1 Citation (Scopus)
92 Downloads (Pure)

Condensation and symmetry-breaking in the zero-range process with weak site disorder

Mailler, C., Morters, P. & Ueltschi, D., 1 Nov 2016, In : Stochastic Processes and their Applications. 126, 11, p. 3283-3309 22 p.

Research output: Contribution to journalArticle

Open Access
File
Zero-range Process
Condensation
Symmetry Breaking
Disorder
Condensate
27 Citations (Scopus)
226 Downloads (Pure)

Consumer perceptions of free-range laying hen welfare

Pettersson, I. C., Weeks, C. A., Wilson, L. R. M. & Nicol, C. J., 1 Aug 2016, In : British Food Journal. 118, 8, p. 1999-2013 15 p.

Research output: Contribution to journalArticle

Open Access
File
consumer attitudes
laying hens
hens
Ovum
Animal Welfare
13 Citations (Scopus)
Open Access
hybrid zone
Molecular Evolution
Mus musculus
interspecific variation
hybridization
5 Citations (Scopus)
102 Downloads (Pure)

Day-to-day population movement and the management of dengue epidemics

Falcon-Lezama, J., Velasco, M., Martinez, R., Castaneda, J. & Adams, B., 4 Oct 2016, In : Bulletin of Mathematical Biology.

Research output: Contribution to journalArticle

Open Access
File
41 Citations (Scopus)
116 Downloads (Pure)

Demographic noise can reverse the direction of deterministic selection

Constable, G. W. A., Rogers, T., McKane, A. J. & Tarnita, C. E., 9 Aug 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 32, p. E4745–E4754 32 p.

Research output: Contribution to journalArticle

Open Access
File
Demographics
Reversal
Evolutionary theory
Game-theoretic models
Extinction
20 Citations (Scopus)
104 Downloads (Pure)
Open Access
File
single nucleotide polymorphism
Single Nucleotide Polymorphism
polymorphism
exons
Exons
1 Citation (Scopus)
119 Downloads (Pure)
Open Access
File
Facility Regulation and Control
Control facilities
disasters
Disasters
Disaster
7 Citations (Scopus)
112 Downloads (Pure)

Efficient estimation and prediction for the Bayesian binary spatial model with flexible link functions

Roy, V., Evangelou, E. & Zhu, Z., Mar 2016, In : Biometrics. 72, 1, p. 289-298

Research output: Contribution to journalArticle

File
Generalized Linear Mixed Model
Link Function
Bayes Theorem
Efficient Estimation
Spatial Model
19 Citations (Scopus)
249 Downloads (Pure)

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
Borrelia burgdorferi
Mammals
Genotype
genotype
Peromyscus
14 Citations (Scopus)

Evolutionary genetics of maternal effects

Wolf, J. B. & Wade, M. J., 1 Apr 2016, In : Evolution. 70, 4, p. 827-839 13 p.

Research output: Contribution to journalArticle

Open Access
maternal effect
Inbreeding
phenotype
inbreeding
Phenotype
9 Citations (Scopus)
92 Downloads (Pure)

From empirical data to time-inhomogeneous continuous Markov processes

Lencastre, P., Raischel, F., Rogers, T. & Lind, P. G., 17 Mar 2016, In : Physical Review E. 93, 3, 032135.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
76 Downloads (Pure)

Front Propagation at the Nematic-Isotropic Transition Temperature

Majumdar, A., Milewski, P. A. & Spicer, A., 19 Jul 2016, In : SIAM Journal on Applied Mathematics. 76, 4, p. 1296-1320 25 p.

Research output: Contribution to journalArticle

Open Access
File
Front Propagation
Superconducting transition temperature
Initial conditions
Boundary conditions
Droplet
3 Citations (Scopus)
94 Downloads (Pure)

Functional constraints on SoxE proteins in neural crest development: the importance of differential expression for evolution of protein activity

Lee, E. M., Yuan, T., Ballim, R. D., Nguyen, K., Kelsh, R. N., Medeiros, D. M. & McCauley, D. W., 1 Oct 2016, In : Developmental Biology. 418, 1, p. 166-178

Research output: Contribution to journalArticle

Open Access
File
Neural Crest
Lampreys
Vertebrates
Proteins
Lancelets
14 Citations (Scopus)
46 Downloads (Pure)

Generating power from transdermal extracts using a multi-electrode miniature enzymatic fuel cell

Du Toit, H., Rashidi, R. B., Ferdani, D. W., Delgado-Charro, M. B., Sangan, C. M. & Di Lorenzo, M., 15 Apr 2016, In : Biosensors and Bioelectronics. 78, p. 411-417 7 p.

Research output: Contribution to journalArticle

Open Access
Enzymatic fuel cells
Electrodes
Equipment and Supplies
Glucose
Electric Power Supplies

Genetic structure within Septobasidium colonies suggests outcrossing and frequent non-self-fusion

Henk, D. A. & Vilgalys, R., 8 Sep 2016, In : Fungal Genomics and Biology. 6, 2, p. 143

Research output: Contribution to journalArticle

Open Access
Septobasidium
outcrossing
insects
genotyping
fungi
8 Citations (Scopus)

Genomic variations leading to alterations in cell morphology of Campylobacter spp

Esson, D., Mather, A. E., Scanlan, E., Gupta, S., De Vries, S. P. W., Bailey, D., Harris, S. R., McKinley, T. J., Méric, G., Berry, S. K., Mastroeni, P., Sheppard, S. K., Christie, G., Thomson, N. R., Parkhill, J., Maskell, D. J. & Grant, A. J., 2 Dec 2016, In : Scientific Reports. 6, 38303.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)
95 Downloads (Pure)

Geographic variation in breeding system and environment predicts melanin-based plumage ornamentation of male and female Kentish plovers

Argüelles Ticó, A., Kupper, C., Kelsh, R. N., Kosztolányi, A., Szekely, T. & van Dijk, R. E., Jan 2016, In : Behavioral Ecology and Sociobiology. 70, 1, p. 49-60

Research output: Contribution to journalArticle

File
14 Citations (Scopus)
108 Downloads (Pure)

Global cooling as a driver of diversification in a major marine clade

Davis, K., Hill, J., Astrop, T. & Wills, M., 4 Oct 2016, In : Nature Communications. 7, p. 1-8 8 p., 13003.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
217 Downloads (Pure)

Household demographic determinants of Ebola epidemic risk

Adams, B., 7 Mar 2016, In : Journal of Theoretical Biology. 392, p. 99-106 8 p.

Research output: Contribution to journalArticle

Open Access
File
households
Determinant
demographic statistics
Demography
Quarantine
7 Citations (Scopus)

Impacts of survival and reproductive success on the long-term population viability of reintroduced great bustards Otis tarda in the UK

Ashbrook, K., Taylor, A., Jane, L., Carter, I. & Székely, T., Oct 2016, In : Oryx. 50, 4, p. 583-592 10 p.

Research output: Contribution to journalArticle

reproductive success
reintroduction
viability
wild population
rearing
8 Citations (Scopus)
95 Downloads (Pure)

Input-to-state stability of discrete-time Lur'e systems

Logemann, H. & Sarkans, E., 31 Dec 2016, In : SIAM Journal on Control and Optimization. 54, 3, p. 1739-1768 31 p.

Research output: Contribution to journalArticle

Open Access
File
Lur'e System
Stability Theory
Discrete-time Systems
Circle
Context
13 Citations (Scopus)

Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression

Wang, J., Singh, M., Sun, C., Besser, D., Prigione, A., Ivics, Z., Hurst, L. D. & Izsvák, Z., 1 Feb 2016, In : Nature Protocols. 11, 2, p. 327-346 20 p.

Research output: Contribution to journalArticle

Pluripotent Stem Cells
Stem cells
Endogenous Retroviruses
Cell Line
Induced Pluripotent Stem Cells
4 Citations (Scopus)
93 Downloads (Pure)

Limiting distribution of the rightmost particle in catalytic branching Brownian motion

Bocharov, S. & Harris, S. C., 4 Oct 2016, In : Electronic Communications in Probability. 21, 12 p., Paper no. 70.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Limiting Distribution
Branching
Gumbel Distribution
Dirac delta function
4 Citations (Scopus)

Localised pattern formation in a model for dryland vegetation

Dawes, J. H. P. & Williams, J. L. M., Jul 2016, In : Journal of Mathematical Biology. 73, 1, p. 63-90

Research output: Contribution to journalArticle

Vegetation
Pattern Formation
arid lands
Soil
vegetation
5 Citations (Scopus)
99 Downloads (Pure)

Measuring stratigraphic congruence across trees, higher taxa and time

O'Connor, A. & Wills, M., 30 Sep 2016, In : Systematic Biology. 65, 5, p. 792-811 20 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
52 Downloads (Pure)

Mesh adaptation on the sphere using optimal transport and the numerical solution of a Monge-Ampère type equation

Weller, H., Browne, P., Budd, C. & Cullen, M., 1 Mar 2016, In : Journal of Computational Physics. 308, p. 102-123 22 p.

Research output: Contribution to journalArticle

Open Access
mesh
Linearization
Resource allocation
Equations of motion
Anisotropy
13 Citations (Scopus)

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii

Farrer, R., Voelz, K., Henk, D., Johnston, S. A., Fisher, M., May, R. & Cuomo, C., 31 Dec 2016, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1709, p. 1-11 11 p., 20160021.

Research output: Contribution to journalArticle

Open Access
Cryptococcus gattii
Metagenomics
Virulence
Fungi
Northwestern United States
50 Citations (Scopus)
101 Downloads (Pure)

Modularity and stability in ecological communities

Rogers, T., Allesina, S. & Grilli, J., 23 Jun 2016, In : Nature Communications. 7, 9 p., 12031 (2016).

Research output: Contribution to journalArticle

Open Access
File
Biota
modularity
Ecology
Ecosystems
Ecosystem
78 Downloads (Pure)

Multilayer asymptotic solution for wetting fronts in porous media with exponential moisture diffusivity

Budd, C. J. & Stockie, J. M., May 2016, In : Studies in Applied Mathematics. 136, 4, p. 424-458

Research output: Contribution to journalArticle

Open Access
File
Moisture
Asymptotic Solution
Wetting
Diffusivity
Porous Media
17 Citations (Scopus)
91 Downloads (Pure)

Mutation rate analysis via parent– progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids

Xie, Z., Wang, L., Wang, L., Wang, Z., Lu, Z., Tian, D., Yang, S. & Hurst, L. D., 26 Oct 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1841, 20161016.

Research output: Contribution to journalArticle

Open Access
File
mutagenicity
Mutation Rate
peaches
mutation
Genes
3 Citations (Scopus)
100 Downloads (Pure)

Mutation rate analysis via parent- progeny sequencing of the perennial peach. II. No evidence for recombination associated mutation

Wang, L., Zhang, Y., Qin, C., Tian, D., Yang, S. & Hurst, L. D., 26 Oct 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1841, 20161785.

Research output: Contribution to journalArticle

Open Access
File
Mutation Rate
peaches
Genetic Recombination
recombination
mutation
1 Citation (Scopus)

Network innoculation: heteroclinics and phase transitions in an epidemic model

Yang, H., Rogers, T. & Gross, T., 22 Aug 2016, In : Chaos. 26, 083116.

Research output: Contribution to journalArticle

Epidemic Model
Phase Transition
Phase transitions
Bifurcation
Local Bifurcations
1 Citation (Scopus)
81 Downloads (Pure)

On the reliability of unreliable information: Gossip as cultural memory

Mitchell, D., Bryson, J. J., Rauwolf, P. & Ingram, G., Oct 2016, In : Interaction Studies. 17, 1, p. 1-25 25 p.

Research output: Contribution to journalArticle

Open Access
File
collective memory
Data storage equipment
demography
information sources
source of information
26 Citations (Scopus)

Pluripotency and the endogenous retrovirus HERVH: conflict or serendipity?

Izsvák, Z., Wang, J., Singh, M., Mager, D. L. & Hurst, L. D., 1 Jan 2016, In : Bioessays. 38, 1, p. 109-117 9 p.

Research output: Contribution to journalArticle

Endogenous Retroviruses
Genes
Genome
Pluripotent Stem Cells
DNA Transposable Elements
6 Citations (Scopus)
105 Downloads (Pure)

Purifying selection on exonic splice enhancers in intronless genes

Savisaar, R. & Hurst, L. D., Jun 2016, In : Molecular Biology and Evolution. 33, 6, p. 1396-1418

Research output: Contribution to journalArticle

Open Access
File
gene
Introns
Genes
introns
genes

Reports of the aaai 2016 Spring Symposium Series

Amato, C., Amir, O., Bryson, J., Grosz, B., Indurkhya, B., Kiciman, E., Kido, T., Lawless, W. F., Liu, M., McDorman, B., Mead, R., Oliehoek, F. A., Specian, A., Stojanov, G. & Takadama, K., 1 Dec 2016, In : Z Magazine. 37, 4, p. 83-88 6 p.

Research output: Contribution to journalArticle

Human robot interaction
Intelligent systems
Computer science
Health
Thermodynamics
2 Citations (Scopus)
82 Downloads (Pure)

Robust set-point regulation for ecological models with multiple management goals

Guiver, C., Mueller, M., Hodgson, D. & Townley, S., 1 May 2016, In : Journal of Mathematical Biology. 72, 6, p. 1467-1529 63 p.

Research output: Contribution to journalArticle

Open Access
File
Ecological Model
Point Sets
Linear control systems
Controllers
Population
11 Citations (Scopus)
113 Downloads (Pure)

Sampling diverse characters improves phylogenies: craniodental and postcranial characters of vertebrates often imply different trees

Mounce, R. C. P., Sansom, R. & Wills, M. A., 15 Mar 2016, In : Evolution. 70, 3, p. 666-686 21 p.

Research output: Contribution to journalArticle

Open Access
File
Phylogeny
Vertebrates
vertebrate
phylogeny
vertebrates
5 Citations (Scopus)

Scale-invariant geometric random graphs

Xie, Z. & Rogers, T., 9 Mar 2016, In : Physical Review E. 93, 3, 032310.

Research output: Contribution to journalArticle

Random Geometric Graph
Scale Invariant
random numbers
dichotomies
hubs
3 Citations (Scopus)

Self-focusing dynamics of patches of ripples

Milewski, P. A. & Wang, Z., 15 Oct 2016, In : Physica D: Nonlinear Phenomena. 333, p. 235-242

Research output: Contribution to journalArticle

Open Access
self focusing
ripples
fluid dynamics
gravity waves
light beams