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2018

Pair correlation functions for identifying spatial correlation in discrete domains

Gavagnin, E., Owen, J. & Yates, C., 4 Jun 2018, In : Physical Review E. 97, 6, 062104.

Research output: Contribution to journalArticle

Open Access
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3 Citations (Scopus)
29 Downloads (Pure)

Patiency Is Not a Virtue: The Design of Intelligent Systems and Systems of Ethics

Bryson, J. J., 1 Mar 2018, In : Ethics and Information Technology. 20, 1, p. 15-26 12 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria.

Thorpe, H., Bayliss, S., Sheppard, S. & Feil, E., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-11 11 p., giy015.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)
Open Access
3 Citations (Scopus)

Robustly simulating biochemical reaction kinetics using multi-level Monte Carlo approaches

Lester, C., Yates, C. A. & Baker, R. E., 15 Dec 2018, In : Journal of Computational Physics. 375, p. 1401-1423 23 p.

Research output: Contribution to journalArticle

Open Access
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Silicon Valley’s quest for immortality – and its worrying sacrifices

Horton, J. & Priest, N., 10 Dec 2018, The Conversation, 101405.

Research output: Contribution to specialist publicationArticle

Technology networks: the autocatalytic origins of innovation

Napolitano, L., Evangelou, E., Pugliese, E., Zeppini, P. & Room, G., 27 Jun 2018, In : Royal Society Open Science. 5, 6, p. 1-17 17 p., 172445.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
23 Downloads (Pure)

Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias

Liu, H., Huang, J., Sun, X., Li, J., Hu, Y., Yu, L., Liti, G., Tian, D., Hurst, L. & Yang, S., 1 Jan 2018, In : Nature Ecology & Evolution. 2, 1, p. 164-173 10 p.

Research output: Contribution to journalArticle

Open Access
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13 Citations (Scopus)
34 Downloads (Pure)
Open Access
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1 Citation (Scopus)
12 Downloads (Pure)

The semi-infinite asymmetric exclusion process: Large deviations via matrix products

Gonzalez Duhart Muñoz De Cote, H., Morters, P. & Zimmer, J., 1 Apr 2018, In : Potential Analysis. 48, 3, p. 301-323

Research output: Contribution to journalArticle

Open Access
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1 Citation (Scopus)
26 Downloads (Pure)

Topical bio(in)equivalence of metronidazole formulations in vivo

Pedon de Araujo, T., Moura Fittipaldi, I., Galindo Bedor, D. C., Ludna Duarte, M., Cordery, S., Guy, R., Delgado-Charro, M., Pereira de Santana, D. & Bastos Leal, L., 25 Apr 2018, In : International Journal of Pharmaceutics. 541, 1-2, p. 167-172 6 p.

Research output: Contribution to journalArticle

Open Access
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4 Citations (Scopus)
30 Downloads (Pure)

Universality in a class of fragmentation-coalescence processes

Kyprianou, A. E., Pagett, S. W. & Rogers, T., 1 May 2018, In : Annales de l'Institut Henri Poincaré: Probabilités et Statistiques. 54, 2, p. 1134-1151 18 p.

Research output: Contribution to journalArticle

Open Access
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1 Citation (Scopus)
29 Downloads (Pure)

When small data beats big data

Faraway, J. & Augustin, N., 1 May 2018, In : Statistics & Probability Letters. 136, p. 142-145 4 p.

Research output: Contribution to journalArticle

Open Access
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9 Citations (Scopus)
5 Downloads (Pure)
2017
Open Access
2 Citations (Scopus)

Adult sex ratio and operational sex ratio exhibit different temporal dynamics in the wild

Carmona-Isunza, M. C., Ancona, S., Székely, T., Ramallo-González, A. P., Cruz-López, M., Serrano-Meneses, M. A. & Küpper, C., 1 Apr 2017, In : Behavioral Ecology. 28, 2, p. 523-532 10 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Adult sex ratios and their implications for cooperative breeding in birds

Komdeur, J., Székely, T., Long, X. & Kingma, S. A., 19 Sep 2017, In : Proceedings of the Royal Society B: Biological Sciences. 372, 1729, 20160322.

Research output: Contribution to journalArticle

6 Citations (Scopus)

A flexible multivariate random effects proportional odds model with application to adverse effects during radiation therapy

Augustin, N., Kim, S. W., Uhlig, A., Hanser, C., Henke, M. & Schumacher, M., 15 Nov 2017, In : Biometrical Journal. 59, 6, p. 1339–1351 201600142.

Research output: Contribution to journalArticle

A machine-compiled microbial supertree from figure-mining thousands of papers

Mounce, R., Murray-Rust, P. & Wills, M., 9 May 2017, In : Research Ideas and Outcomes. 3, e13589.

Research output: Contribution to journalArticle

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125 Downloads (Pure)

A Mobile Agent Routing Protocol for Data Aggregation in Wireless Sensor Networks

Pourroostaei Ardakani, S., Padget, J. & De Vos, M., Mar 2017, In : International Journal of Wireless Information Networks. 24, 1, p. 27-41

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
128 Downloads (Pure)

A multi-stage representation of cell proliferation as a Markov process

Yates, C., Ford, M. & Mort, R., 1 Dec 2017, In : Bulletin of Mathematical Biology. 79, 12, p. 2905–2928 24 p.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
29 Downloads (Pure)

Analysis of spatial mobility in subjects from a dengue endemic urban locality in Morelos State, Mexico

Falcón-Lezama, J. A., Santos-Luna, R., Román-Pérez, S., Martínez-Vega, R. A., Herrera-Valdez, M. A., Kuri-Morales, Á. F., Adams, B., Kuri-Morales, P. A., López-Cervantes, M. & Ramos-Castañeda, J., 22 Feb 2017, In : PLoS ONE. 12, 2, e0172313.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

A necessary condition for dispersal driven growth of populations with discrete patch dynamics

Guiver, C., Packman, D. & Townley, S., 7 Jul 2017, In : Journal of Theoretical Biology. 424, p. 11-25

Research output: Contribution to journalArticle

Open Access

An ongoing role for Wnt signaling in differentiating melanocytes in vivo

Vibert, L., Aquino, G., Gehring, I., Subkhankulova, T., Schilling, T. F., Rocco, A. & Kelsh, R., Mar 2017, In : Pigment Cell & Melanoma Research. 30, 2, p. 219-232

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
83 Downloads (Pure)

A phase-plane analysis of localized frictional waves

Putelat, T., Dawes, J. H. P. & Champneys, A. R., 31 Jul 2017, In : Proceedings of the Royal Society A: Mathematical Physical and Engineering Sciences. 473, 2203, p. 1 - 27 27 p., 0606.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

A phase transition in excursions from infinity of the "fast" fragmentation-coalescence process

Kyprianou, A., Rogers, T., Pagett, S. & Schweinsberg, J., 30 Nov 2017, In : Annals of Probablitiy. 45, 6A, p. 3829-3849 21 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

A polychromatic 'greenbeard' locus determines patterns of cooperation in a social amoeba

Gruenheit, N., Parkinson, K., Stewart, B., Howie, J. A., Wolf, J. B. & Thompson, C. R. L., 25 Jan 2017, In : Nature Communications. 8, 14171.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle

Awasthi Mishra, N., Droegemueller, C., Jagannathan, V., Keller, I., Wuthrich, D., Bruggmann, R., Beck, J., Schuetz, E., Brenig, B., Demmel, S., Moser, S., Signer-Hasler, H., Pienkowska-Schelling, A., Schelling, C., Sande, M., Rongen, R., Rieder, S., Kelsh, R. N., Mercader, N. & Leeb, T., 28 Jun 2017, In : PLoS ONE. 12, 6, 16 p., e0180170.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

A temperature compensation method for chlorophyll and phycocyanin fluorescence sensors in freshwater

Watras, C. J., Morrison, K. A., Rubsam, J. L., Hanson, P. C., Watras, A. J., Laliberte, G. D. & Milewski, P., Jul 2017, In : Limnology and Oceanography: Methods. 15, 7, p. 642-652

Research output: Contribution to journalArticle

1 Citation (Scopus)

Automated multi-level governance compliance checking

King, T. C., De Vos, M., Dignum, V., Jonker, C. M., Li, T., Padget, J. & van Riemsdijk, M. B., 30 Nov 2017, In : Autonomous Agents and Multi-Agent Systems. 31, 6, p. 1283-1343 61 p.

Research output: Contribution to journalArticle

Open Access
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3 Citations (Scopus)
117 Downloads (Pure)

Bioequivalence methodologies for topical drug products: in vitro and ex vivo studies with a cortiscosteroid and an anti-fungal drug

Bastos Leal, L., Cordery, S. F., Delgado-Charro, M. B., Bunge, A. L. & Guy, R. H., Apr 2017, In : Pharmaceutical Research. 34, 4, p. 730-737 8 p.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Both maintenance and avoidance of RNA-binding protein interactions constrain coding region evolution

Savisaar, R. & Hurst, L., 1 May 2017, In : Molecular Biology and Evolution. 34, 5, p. 1110-1126

Research output: Contribution to journalArticle

Open Access
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10 Citations (Scopus)
138 Downloads (Pure)

Branching Brownian motion with absorption and the all-time minimum of branching Brownian motion with drift

Berestycki, J., Brunet, É., Harris, S. C. & Miłoś, P., 15 Sep 2017, In : Journal of Functional Analysis. 273, 6, p. 2107-2143 37 p.

Research output: Contribution to journalArticle

Open Access
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2 Citations (Scopus)
106 Downloads (Pure)

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Demographic noise slows down cycles of dominance

Yang, Q., Rogers, T. & Dawes, J. H. P., 7 Nov 2017, In : Journal of Theoretical Biology. 432, p. 157-168 12 p.

Research output: Contribution to journalArticle

Open Access
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4 Citations (Scopus)
100 Downloads (Pure)

Dental data perform relatively poorly in reconstructing mammal phylogenies: Morphological partitions evaluated with molecular benchmarks

Sansom, R. S., Wills, M. A. & Williams, T., 30 Sep 2017, In : Systematic Biology. 66, 5, p. 813-822 10 p.

Research output: Contribution to journalArticle

Open Access
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16 Citations (Scopus)
120 Downloads (Pure)

Depletion of somatic mutations in splicing-associated sequences in cancer genomes

Hurst, L. & Batada, N. N., 7 Nov 2017, In : Genome Biology. 18, 1, 12 p., 213.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Designing and implementing transparency for real time inspection of autonomous robots

Theodorou, A., Wortham, R. H. & Bryson, J. J., 30 May 2017, In : Connection Science. 29, 3, p. 230-241 12 p.

Research output: Contribution to journalArticle

Open Access
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18 Citations (Scopus)
325 Downloads (Pure)

Diagnostics of circumstellar grains in geometric models – I. Structure and composition

Dawes, J. & Greaves, J. S., 11 May 2017, In : Monthly Notices of the Royal Astronomical Society. 467, 1, p. 218-225 8 p.

Research output: Contribution to journalArticle

Open Access

Differences between hard and soft phylogenetic data

Sansom, R. S. & Wills, M. A., 20 Dec 2017, In : Proceedings of the Royal Society B: Biological Sciences. 284, 1869, 20172150.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)
Open Access
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8 Citations (Scopus)
40 Downloads (Pure)

Direct determination of the mutation rate in the bumblebee reveals evidence for weak recombination-associated mutation and an approximate rate constancy in insects

Liu, H., Jia, Y., Sun, X., Tian, D., Hurst, L. D. & Yang, S., 1 Jan 2017, In : Molecular Biology and Evolution. 34, 1, p. 119-130 12 p.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

Disturbed Placental Imprinting in Preeclampsia Leads to Altered Expression of DLX5, a Human-Specific Early Trophoblast Marker

Zadora, J., Singh, M., Herse, F., Przybyl, L., Haasse, N., Golic, M., Yung, H. W., Huppertz, B., Cartwright, J. E., Whitley, G., Johnsen, G. M., Levi, G., Isbruch, A., Schulz, H., Luft, F. C., Muller, D. N., Staff, A. C., Hurst, L., Dechend, R. & Izsvak, Z., 7 Nov 2017, In : Circulation. 136, 19, p. 1824-1839 16 p.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Draft genome sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 new isolates belonging to the genus Salinivibrio

López-Hermoso, C., de la Haba, R. R., Cristina Sánchez-Porro, S-P., Bayliss, S. C., Feil, E. J. & Ventosa, A., 1 Jul 2017, In : Genome announcements. 5, 27, e00244-17.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Dual-specificity phosphatase 5 controls the localized inhibition, propagation, and transforming potential of ERK signaling

Kidger, A. M., Rushworth, L. K., Stellzig, J., Davidson, J., Bryant, C. J., Bayley, C., Caddye, E., Rogers, T., Keyse, S. M. & Caunt, C. J., 17 Jan 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 3, p. E317-E326 10 p.

Research output: Contribution to journalArticle

Open Access
25 Citations (Scopus)

Dynamics of the discrete Seno population model: Combined effects of harvest timing and intensity on population stability

Franco, D., Logemann, H., Perán, J. & Segura, J., 1 Aug 2017, In : Applied Mathematical Modelling. 48, p. 885-898 14 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Efficient parameter sensitivity computation for spatially extended reaction networks

Lester, C., Yates, C. & Baker, R. E., 28 Jan 2017, In : Journal of Chemical Physics. 146, 4, 044106.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
29 Downloads (Pure)

Engineering of PEDF-Expressing Primary Pigment Epithelial Cells by the SB Transposon System Delivered by pFAR4 Plasmids

Thumann, G., Harmening, N., Prat-Souteyrand, C., Marie, C., Pastor, M., Sebe, A., Miskey, C., Hurst, L. D., Diarra, S., Kropp, M., Walter, P., Scherman, D., Ivics, Z., Izsvák, Z. & Johnen, S., 17 Mar 2017, In : Molecular Therapy - Nucleic Acids. 6, p. 302-314 13 p.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)

Estimating the prevalence of functional exonic splice regulatory information

Savisaar, R. & Hurst, L. D., 1 Sep 2017, In : Human Molecular Genetics. 136, 9, p. 1059-1078 20 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Extremely low Plasmodium prevalence in wild plovers and coursers from Cape Verde and Madagascar

Martínez-De La Puente, J., Eberhart-Phillips, L. J., Cristina Carmona-Isunza, M., Zefania, S., Navarro, M. J., Kruger, O., Hoffman, J. I., Székely, T. & Figuerola, J., 8 Jun 2017, In : Malaria Journal. 16, 1, 243.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Faraday wave-droplet dynamics: discrete-time analysis

Durey, M. & Milewski, P., 25 Jun 2017, In : Journal of Fluid Mechanics. 821, p. 296-328 33 p.

Research output: Contribution to journalArticle

Open Access
24 Citations (Scopus)