Research Output 1977 2020

2016
50 Citations (Scopus)
101 Downloads (Pure)

Modularity and stability in ecological communities

Rogers, T., Allesina, S. & Grilli, J., 23 Jun 2016, In : Nature Communications. 7, 9 p., 12031 (2016).

Research output: Contribution to journalArticle

Open Access
File
Biota
modularity
Ecology
Ecosystems
Ecosystem
79 Downloads (Pure)

Multilayer asymptotic solution for wetting fronts in porous media with exponential moisture diffusivity

Budd, C. J. & Stockie, J. M., May 2016, In : Studies in Applied Mathematics. 136, 4, p. 424-458

Research output: Contribution to journalArticle

Open Access
File
Moisture
Asymptotic Solution
Wetting
Diffusivity
Porous Media
17 Citations (Scopus)
93 Downloads (Pure)

Mutation rate analysis via parent– progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids

Xie, Z., Wang, L., Wang, L., Wang, Z., Lu, Z., Tian, D., Yang, S. & Hurst, L. D., 26 Oct 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1841, 20161016.

Research output: Contribution to journalArticle

Open Access
File
mutagenicity
Mutation Rate
peaches
mutation
Genes
3 Citations (Scopus)
102 Downloads (Pure)

Mutation rate analysis via parent- progeny sequencing of the perennial peach. II. No evidence for recombination associated mutation

Wang, L., Zhang, Y., Qin, C., Tian, D., Yang, S. & Hurst, L. D., 26 Oct 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1841, 20161785.

Research output: Contribution to journalArticle

Open Access
File
Mutation Rate
peaches
Genetic Recombination
recombination
mutation
1 Citation (Scopus)

Network innoculation: heteroclinics and phase transitions in an epidemic model

Yang, H., Rogers, T. & Gross, T., 22 Aug 2016, In : Chaos. 26, 083116.

Research output: Contribution to journalArticle

Epidemic Model
Phase Transition
Phase transitions
Bifurcation
Local Bifurcations
1 Citation (Scopus)
30 Downloads (Pure)

Normative practical reasoning via argumentation and dialogue

Shams, Z., De Vos, M., Oren, N. & Padget, J., 31 Jul 2016, Proceedings of the 25th International Joint Conference on Artificial Intelligence (IJCAI), 2016. Kambhampati, S. (ed.). Palo Alto, U. S. A.: AAAI Press, p. 1244-1250 7 p. (Proceedings (IITA International Joint Conference on Artificial Intelligence)).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Decision making
Planning
Compliance
1 Citation (Scopus)
82 Downloads (Pure)

On the reliability of unreliable information: Gossip as cultural memory

Mitchell, D., Bryson, J. J., Rauwolf, P. & Ingram, G., Oct 2016, In : Interaction Studies. 17, 1, p. 1-25 25 p.

Research output: Contribution to journalArticle

Open Access
File
collective memory
Data storage equipment
demography
information sources
source of information
26 Citations (Scopus)

Pluripotency and the endogenous retrovirus HERVH: conflict or serendipity?

Izsvák, Z., Wang, J., Singh, M., Mager, D. L. & Hurst, L. D., 1 Jan 2016, In : Bioessays. 38, 1, p. 109-117 9 p.

Research output: Contribution to journalArticle

Endogenous Retroviruses
Genes
Genome
Pluripotent Stem Cells
DNA Transposable Elements
6 Citations (Scopus)
106 Downloads (Pure)

Purifying selection on exonic splice enhancers in intronless genes

Savisaar, R. & Hurst, L. D., Jun 2016, In : Molecular Biology and Evolution. 33, 6, p. 1396-1418

Research output: Contribution to journalArticle

Open Access
File
gene
Introns
Genes
introns
genes

Reports of the aaai 2016 Spring Symposium Series

Amato, C., Amir, O., Bryson, J., Grosz, B., Indurkhya, B., Kiciman, E., Kido, T., Lawless, W. F., Liu, M., McDorman, B., Mead, R., Oliehoek, F. A., Specian, A., Stojanov, G. & Takadama, K., 1 Dec 2016, In : Z Magazine. 37, 4, p. 83-88 6 p.

Research output: Contribution to journalArticle

Human robot interaction
Intelligent systems
Computer science
Health
Thermodynamics
2 Citations (Scopus)

Revising institutions governed by institutions for compliant regulations

King, T. C., Li, T., De Vos, M., Jonker, C. M., Padget, J. & van Riemsdijk, M. B., 13 Jul 2016, Coordination, Organizations, Institutions, and Normes in Agent Systems XI: COIN 2015 International Workshops, COIN@AAMAS, Istanbul, Turkey, May 4, 2015, COIN@IJCAI, Buenos Aires, Argentina, July 26, 2015, Revised Selected Papers. Dignum, V., Noriega, P., Sensoy, M. & Simao Sichman, J. (eds.). Springer International Publishing, p. 191-208 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9628).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi agent systems
Innovation
216 Downloads (Pure)

Robot Transparency, Trust and Utility

Wortham, R. H., Theodorou, A. & Bryson, J. J., 4 Apr 2016. 3 p.

Research output: Contribution to conferencePaper

Open Access
File
Transparency
Robots
Robotics
2 Citations (Scopus)
84 Downloads (Pure)

Robust set-point regulation for ecological models with multiple management goals

Guiver, C., Mueller, M., Hodgson, D. & Townley, S., 1 May 2016, In : Journal of Mathematical Biology. 72, 6, p. 1467-1529 63 p.

Research output: Contribution to journalArticle

Open Access
File
Ecological Model
Point Sets
Linear control systems
Controllers
Population
11 Citations (Scopus)
113 Downloads (Pure)

Sampling diverse characters improves phylogenies: craniodental and postcranial characters of vertebrates often imply different trees

Mounce, R. C. P., Sansom, R. & Wills, M. A., 15 Mar 2016, In : Evolution. 70, 3, p. 666-686 21 p.

Research output: Contribution to journalArticle

Open Access
File
Phylogeny
Vertebrates
vertebrate
phylogeny
vertebrates
5 Citations (Scopus)

Scale-invariant geometric random graphs

Xie, Z. & Rogers, T., 9 Mar 2016, In : Physical Review E. 93, 3, 032310.

Research output: Contribution to journalArticle

Random Geometric Graph
Scale Invariant
random numbers
dichotomies
hubs
3 Citations (Scopus)

Self-focusing dynamics of patches of ripples

Milewski, P. A. & Wang, Z., 15 Oct 2016, In : Physica D: Nonlinear Phenomena. 333, p. 235-242

Research output: Contribution to journalArticle

Open Access
self focusing
ripples
fluid dynamics
gravity waves
light beams
6 Citations (Scopus)
54 Downloads (Pure)

Simple adaptive control for positive linear systems with applications to pest management

Guiver, C., Edholm, C., Jin, Y., Mueller, M., Powell, J., Rebarber, R., Tenhumberg, B. & Townley, S., 4 Feb 2016, In : SIAM Journal on Applied Mathematics. 76, 1, p. 238-275 38 p.

Research output: Contribution to journalArticle

Open Access
Positive Systems
Adaptive Control
Linear systems
Linear Systems
Nonlinear feedback
26 Downloads (Pure)

Simple adaptive feedback control for positive state control systems

Guiver, C., Logemann, H. & Townley, S., 2016, (Unpublished).

Research output: Contribution to conferencePaper

File

Simulation and the evolution of thought

Bryson, J. J., 1 Jan 2016, Memory in the Twenty-First Century: New Critical Perspectives from the Arts, Humanities, and Sciences. Groes, S. (ed.). Palgrave Macmillan, p. 205-207 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Simulation
Thought
Reverie
Entertainment
Devotion
1 Citation (Scopus)
91 Downloads (Pure)

Skorokhod embeddings for two-sided Markov chains

Morters, P. & Redl, I., Jun 2016, In : Probability Theory and Related Fields. 165, 1

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
93 Downloads (Pure)

Stability of higher-order discrete-time Lur’e systems

Sarkans, E. & Logemann, H., 1 Oct 2016, In : Linear Algebra and its Applications. 506, p. 183-211 30 p.

Research output: Contribution to journalArticle

Open Access
File
Lur'e System
ARMA Model
Discrete-time Systems
Higher Order
Higher order equation
6 Citations (Scopus)
49 Downloads (Pure)

Stability of Non-Negative Lur'e Systems

Bill, A., Guiver, C., Logemann, H. & Townley, S., 12 May 2016, In : SIAM Journal on Control and Optimization. 54, 3, p. 1176-1211 36 p.

Research output: Contribution to journalArticle

Open Access
Lur'e System
Non-negative
Perron-Frobenius Theory
Exponential Asymptotics
Absolute Stability
16 Citations (Scopus)
103 Downloads (Pure)

Structure-activity relationships of 2-arylquinazolin-4-ones as highly selective and potent inhibitors of the tankyrases

Nathubhai, A., Haikarainen, T., Hayward, P. C., Munoz-Descalzo, S., Thompson, A. S., Lloyd, M. D., Lehtio, L. & Threadgill, M., 8 Aug 2016, In : European Journal of Medicinal Chemistry. 118, p. 316-327 12 p.

Research output: Contribution to journalArticle

Open Access
File
Tankyrases
Structure-Activity Relationship
Poly(ADP-ribose) Polymerases
Molecular Probes
Pharmaceutical Preparations
13 Citations (Scopus)
111 Downloads (Pure)

Substitution of the native srfA promoter by constitutive Pveg in two B. subtilis strains and evaluation of the effect on surfactin production

Willenbacher, J., Mohr, T., Henkel, M., Gebhard, S., Mascher, T., Syldatk, C. & Hausmann, R., Apr 2016, In : Journal of Biotechnology. 224, p. 14-17

Research output: Contribution to journalArticle

Open Access
File
Bacillus subtilis
Quorum Sensing
Genetic Enhancement
Operon
Cell Count

The confabulation of self

Bryson, J. J., 1 Jan 2016, Memory in the Twenty-First Century: New Critical Perspectives from the Arts, Humanities, and Sciences. Groes, S. (ed.). Palgrave Macmillan, p. 334-337 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ego
12 Citations (Scopus)
122 Downloads (Pure)

The evolution of sex-specific dominance in response to sexually antagonistic selection

Spencer, H. G. & Priest, N. K., May 2016, In : The American Naturalist. 187, 5, p. 658-666 9 p., 10.1086/685827.

Research output: Contribution to journalArticle

File
Genes
Mathematical models
Genetics
7 Citations (Scopus)

The impact of host metapopulation structure on the population genetics of colonizing bacteria

Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., van Schaik, W., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

Research output: Contribution to journalArticle

Metapopulation
Population Genetics
Bacteria
Migration
population genetics
19 Citations (Scopus)

The landscape of realized homologous recombination in pathogenic bBacteria

Yahara, K., Didelot, X., Jolley, K. A., Kobayashi, I., Maiden, M. C. J., Sheppard, S. & Falush, D., 1 Feb 2016, In : Molecular Biology and Evolution. 33, 2, p. 456-471 16 p.

Research output: Contribution to journalArticle

Open Access
Homologous Recombination
homologous recombination
Genetic Recombination
recombination
gene
4 Citations (Scopus)

The optimal timing of open market stock repurchases

Krause, A. & Hsu, C-C., 2016, In : Emerging Markets Finance and Trade. 52, 4, p. 776-785

Research output: Contribution to journalArticle

Repurchase
Optimal timing
Stock repurchases
Continuous time
Authorization
35 Citations (Scopus)
44 Downloads (Pure)

The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus

Senn, L., Clerc, O., Zanetti, G., Basset, P., Prod'hom, G., Gordon, N., Sheppard, A., Crook, D., James, R., Thorpe, H. A. F. W., Feil, E. & Blanc, D., 28 Feb 2016, In : mBio. 7, 1, p. 1-9 9 p., e02039-15.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)
96 Downloads (Pure)

Thyroid hormones regulate zebrafish melanogenesis in a gender-specific manner

Guillot, R., Muriach, B., Rocha, A., Rotllant, J., Kelsh, R. & Cerda-Reverter, J. M., 10 Nov 2016, In : PLoS ONE. 11, 11, e0166152.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)

Transmission of Staphylococcus aureus from humans to green monkeys in the Gambia as revealed by whole-genome sequencing

Senghore, M., Bayliss, S., Kwambana-Adams, B., Foster-Nyarko, E., Menneh, J., Dione, M., Badji, H., Ebruke, C., Doughty, E., Thorpe, H. A. F. W., Jasinska, A., Schmitt, C., Cramer, J., Turner, T., Weinstock, G., Freimer, N., Pallen, M., Feil, E. & Antonio, M., Oct 2016, In : Applied and Environmental Microbiology. 82, 19, p. 5910-5917 8 p.

Research output: Contribution to journalArticle

Open Access
Gambia
Cercopithecus aethiops
monkeys
Staphylococcus aureus
genome

Triple jeopardy for people with albinism

Arnheiter, H., Long, G., Aplin, A., Harris, J. & Kelsh, R., Sep 2016, In : Pigment Cell & Melanoma Research. 29, 5, p. 487

Research output: Contribution to journalArticle

41 Downloads (Pure)

Trust, Communication, and Inequality

Bryson, J. J. & Rauwolf, P., Aug 2016, Proceedings of the 38th Annual Meeting of the Cognitive Science Society. Philadelphia

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
communication
choice of partner
cooperative behavior
cause
social behavior
46 Citations (Scopus)
42 Downloads (Pure)

Unexpected diversity in socially synchronized rhythms of shorebirds

Bulla, M., Valcu, M., Dokter, A. M., Dondua, A. G., Kosztolányi, A., Rutten, A. L., Helm, B., Sandercock, B. K., Casler, B., Ens, B. J., Spiegel, C. S., Hassell, C. J., Küpper, C., Minton, C., Burgas, D., Lank, D. B., Payer, D. C., Loktionov, E. Y., Nol, E., Kwon, E. & 56 others, Smith, F., Gates, H. R., Vitnerová, H., Prüter, H., Johnson, J. A., St Clair, J. J. H., Lamarre, J. F., Rausch, J., Reneerkens, J., Conklin, J. R., Burger, J., Liebezeit, J., Bêty, J., Coleman, J. T., Figuerola, J., Hooijmeijer, J. C. E. W., Alves, J. A., Smith, J. A. M., Weidinger, K., Koivula, K., Gosbell, K., Exo, K. M., Niles, L., Koloski, L., McKinnon, L., Praus, L., Klaassen, M., Giroux, M. A., Sládecek, M., Boldenow, M. L., Goldstein, M. I., Šálek, M., Senner, N., Rönkä, N., Lecomte, N., Gilg, O., Vincze, O., Johnson, O. W., Smith, P. A., Woodard, P. F., Tomkovich, P. S., Battley, P. F., Bentzen, R., Lanctot, R. B., Porter, R., Saalfeld, S. T., Freeman, S., Brown, S. C., Yezerinac, S., Székely, T., Montalvo, T., Piersma, T., Loverti, V., Pakanen, V. M., Tijsen, W. & Kempenaers, B., 1 Dec 2016, In : Nature. 540, 7631, p. 109-113 5 p.

Research output: Contribution to journalArticle

Open Access
File
predators
nests
starvation
photoperiod
foraging

Welcome to the New Year!

Arnheiter, H., Long, G., Aplin, A., Harris, J. & Kelsh, R., Jan 2016, In : Pigment Cell & Melanoma Research. 29, 1, p. 3

Research output: Contribution to journalEditorial

What do aliens look like? The clue is in evolution

Wills, M., 19 Aug 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
76 Downloads (Pure)

What Does the Robot Think? Transparency as a Fundamental Design Requirement for Intelligent Systems

Wortham, R. H., Theodorou, A. & Bryson, J. J., 9 Jun 2016, Proceedings of the IJCAI Workshop on Ethics for Artificial Intelligence : International Joint Conference on Artificial Intelligence. 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Intelligent systems
Transparency
Robots
32 Citations (Scopus)
120 Downloads (Pure)

What is a vertebrate pigment cell?

Schartl, M., Larue, L., Goda, M., Bosenberg, M. W., Hashimoto, H. & Kelsh, R. N., Jan 2016, In : Pigment Cell & Melanoma Research. 29, 1, p. 8-14

Research output: Contribution to journalLiterature review

Open Access
File
Pigments
Vertebrates
Terminology
Education
Research
80 Citations (Scopus)
63 Downloads (Pure)

Whole-genome sequencing for routine pathogen surveillance in Public Health: a population snapshot of invasive staphylococcus aureus in Europe

ESCMID Study Group on Molecular Epidemiological Markers (ESGEM) & European Staphylococcal Reference Laboratory Working Group, 30 Jun 2016, In : mBio. 7, 3, 15 p., e00444-16.

Research output: Contribution to journalArticle

Open Access
File
Public Health Surveillance
Staphylococcus aureus
Genome
Population
Microbial Drug Resistance

Why did sex evolve? Researchers edge closer to solving longstanding mystery

Hurst, L., 29 Feb 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
66 Downloads (Pure)

Why is my robot behaving like that? Designing transparency for real time inspection of autonomous robots

Theodorou, A., Wortham, R. H. & Bryson, J. J., 4 Apr 2016. 4 p.

Research output: Contribution to conferencePaper

Open Access
File
Transparency
Robotics
Inspection
Robots
Intelligent agents

Why is the X chromosome so odd? Traffic analogy helped us crack the mystery

Hurst, L. D. & Huminiecki, L., 11 Jan 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
Mystery
Chromosome
Traffic
Crack
Evolutionary

Workshop-based training for capacity building: using Drosophila to bring research skills to Africa

Vicente-Crespo, M., Munoz-Descalzo, S., Weil, T., Martín-Bermudo, M. D. & Palacios, I., Apr 2016, In : FASEB Journal. 30, 1 suppl.663.2

Research output: Contribution to journalMeeting abstract

‘Resistance-proof’ antibiotics may never exist – but there are some promising alternatives

Gebhard, S. & Feil, E., 8 Mar 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
2015
11 Citations (Scopus)

A Framework for Institutions Governing Institutions

King, T., Li, T., De Vos, M., Dignum, V., Jonker, C., Padget, J. & van Riemsdijk, M. B., 2015, Proceedings of the 14th International Conference on Autonomous Agents and Multiagent Systems (AAMAS2015). p. 473-481 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

subsidiarity
treaty
legislation
regulation
Society
7 Citations (Scopus)

Alternative splice in alternative lice

Tovar-Corona, J. M., Castillo-Morales, A., Chen, L., Olds, B. P., Clark, J. M., Reynolds, S. E., Pittendrigh, B. R., Feil, E. J. & Urrutia, A. O., 1 Oct 2015, In : Molecular Biology and Evolution. 32, 10, p. 2749-2759 11 p.

Research output: Contribution to journalArticle

Open Access
Pediculus humanus
Pediculus humanus capitis
Pediculus
Phthiraptera
louse
16 Citations (Scopus)

A mathematical biologist’s guide to absolute and convective instability

Sherratt, J. A., Dagbovie, A. S. & Hilker, F. M., Jan 2015, In : Bulletin of Mathematical Biology. 76, 1, p. 1-26 26 p.

Research output: Contribution to journalArticle

Convective Instability
biologists
Unstable
Subdivide
Spatio-temporal Patterns
11 Citations (Scopus)
187 Downloads (Pure)

A modular approach to learning manipulation strategies from human demonstration

Huang, B., Li, M., De Souza, R. L., Bryson, J. J. & Billard, A., 2015, In : Autonomous Robots. 40, 5, p. 1-25 25 p.

Research output: Contribution to journalArticle

Open Access
File
Demonstrations
Bottles
Robots
Container closures
Robotics