Research Output 1977 2020

2017

Wastewater-based epidemiology as a powerful tool for helping to tackle antibiotic resistance

Castrignano, E., Elder, F., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

3 Citations (Scopus)
70 Downloads (Pure)
Open Access
File
Adult Stem Cells
Zebrafish
Stem cells
Pigments
Stem Cells
2016
5 Citations (Scopus)
346 Downloads (Pure)
Open Access
File
Turing
Pattern Formation
Mathematics
Morphogenesis
Motifs
6 Citations (Scopus)
76 Downloads (Pure)

A hybrid algorithm for coupling partial differential equation and compartment-based dynamics

Harrison, J. & Yates, C., 14 Sep 2016, In : Journal of the Royal Society, Interface. 13, 122, 11 p., 20160335.

Research output: Contribution to journalArticle

Open Access
File
Partial differential equations
Stochastic models
Fluxes
1 Citation (Scopus)
129 Downloads (Pure)

A mechanistic approach to modelling the formation of a drug reservoir in the skin

Jones, J. G., White, K. A. J. & Delgado-Charro, M. B., 1 Nov 2016, In : Mathematical Biosciences. 281, p. 36-45 10 p.

Research output: Contribution to journalArticle

Open Access
File
Skin
Drugs
drugs
Modeling
Pharmaceutical Preparations
20 Citations (Scopus)
95 Downloads (Pure)

Anatomy of the bacitracin resistance network in Bacillus subtilis

Radeck, J., Gebhard, S., Orchard, P. S., Kirchner, M., Bauer, S., Mascher, T. & Fritz, G., 10 Mar 2016, In : Molecular Microbiology. 100, 4, p. 607-620

Research output: Contribution to journalArticle

Open Access
File
Bacitracin
Bacillus subtilis
Anatomy
Bacterial Drug Resistance
Peptides
102 Downloads (Pure)

A note on the eigenvectors of perturbed matrices with applications to linear positive systems

Guiver, C., Hodgson, D. & Townley, S., 15 Nov 2016, In : Linear Algebra and its Applications. 509, p. 143-167

Research output: Contribution to journalArticle

Open Access
File
Positive Systems
Eigenvalues and eigenfunctions
Eigenvector
Linear Systems
Structured Perturbations
3 Citations (Scopus)

Application of a Bacillus subtilis whole-cell biosensor (PliaI-lux) for the identification of cell wall active antibacterial compounds

Kobras, C. M., Mascher, T. & Gebhard, S., 22 Nov 2016, Antibiotics: Methods and Protocols. Sass, P. (ed.). New York. U. S. A.: Springer Verlag, p. 121-131 7. (Methods in Molecular Biology; vol. 1520).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)
103 Downloads (Pure)

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
Cross Infection
DNA Sequence Analysis
Virulence
Software
Bacteria
5 Citations (Scopus)
102 Downloads (Pure)

Branching brownian motion in a strip: survival near criticality

Harris, S., Hesse, M. & Kyprianou, A., Jan 2016, In : Annals of Probability. 44, 1, p. 235-275 51 p.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Criticality
Strip
Spine
Backbone
11 Citations (Scopus)
115 Downloads (Pure)

Cannibalism stress response in Bacillus subtilis

Höfler, C., Heckmann, J., Fritsch, A., Popp, P., Gebhard, S., Fritz, G. & Mascher, T., Jan 2016, In : Microbiology. 162, 1, p. 164-176

Research output: Contribution to journalArticle

Open Access
File
Cannibalism
Bacillus subtilis
Sigma Factor
Cell Survival
Soil
3 Citations (Scopus)
78 Downloads (Pure)

CBA: a cluster-based client/server data aggregation routing protocol

Pourroostaei Ardakani, S., Padget, J. & De Vos, M., 1 Nov 2016, In : Ad Hoc Networks. 50, p. 68-87

Research output: Contribution to journalArticle

Open Access
File
Routing protocols
Servers
Agglomeration
Energy utilization
Hamming distance

Cheating is more society’s problem than an affair of the heart

Szekely, T., 17 Feb 2016, The Conversation.

Research output: Contribution to specialist publicationArticle

Open Access
1 Citation (Scopus)
26 Downloads (Pure)

Chevron folding patterns and heteroclinic orbits

Budd, C. J., Chakhchoukh, A. N., Dodwell, T. J. & Kuske, R., 1 Sep 2016, In : Physica D: Nonlinear Phenomena. 330, p. 32-46 15 p.

Research output: Contribution to journalArticle

Open Access
File
limbs
folding
orbits
elastic media
systems analysis
46 Citations (Scopus)
73 Downloads (Pure)

Clarification of mural cell coverage of vascular endothelial cells by live imaging of zebrafish

Ando, K., Fukuhara, S., Izumi, N., Nakajima, H., Fukui, H., Kelsh, R. N. & Mochizuki, N., 19 Apr 2016, In : Development. 143, 8, p. 1328-1339 12 p.

Research output: Contribution to journalArticle

Open Access
File
Zebrafish
Endothelial Cells
Intercellular Junctions
Mesoderm
Blood Vessels
10 Citations (Scopus)
tetrapod
skeleton
fish
tree yields
phylogenetics
2 Citations (Scopus)
134 Downloads (Pure)

Comparison of drug release from poly(lactide-co-glycolide) microspheres and novel fibre formulations

Campbell, C. S. J., Delgado-Charro, M. B., Camus, O. & Perera, S., 1 Mar 2016, In : Journal of Biomaterials Applications. 30, 8, p. 1142-1153 12 p.

Research output: Contribution to journalArticle

Open Access
File
Polyglactin 910
Microspheres
Cisplatin
Fibers
Pharmaceutical Preparations
1 Citation (Scopus)
93 Downloads (Pure)

Condensation and symmetry-breaking in the zero-range process with weak site disorder

Mailler, C., Morters, P. & Ueltschi, D., 1 Nov 2016, In : Stochastic Processes and their Applications. 126, 11, p. 3283-3309 22 p.

Research output: Contribution to journalArticle

Open Access
File
Zero-range Process
Condensation
Symmetry Breaking
Disorder
Condensate
27 Citations (Scopus)
230 Downloads (Pure)

Consumer perceptions of free-range laying hen welfare

Pettersson, I. C., Weeks, C. A., Wilson, L. R. M. & Nicol, C. J., 1 Aug 2016, In : British Food Journal. 118, 8, p. 1999-2013 15 p.

Research output: Contribution to journalArticle

Open Access
File
consumer attitudes
laying hens
hens
Ovum
Animal Welfare
13 Citations (Scopus)
Open Access
hybrid zone
Molecular Evolution
Mus musculus
interspecific variation
hybridization
5 Citations (Scopus)
104 Downloads (Pure)

Day-to-day population movement and the management of dengue epidemics

Falcon-Lezama, J., Velasco, M., Martinez, R., Castaneda, J. & Adams, B., 4 Oct 2016, In : Bulletin of Mathematical Biology.

Research output: Contribution to journalArticle

Open Access
File
41 Citations (Scopus)
117 Downloads (Pure)

Demographic noise can reverse the direction of deterministic selection

Constable, G. W. A., Rogers, T., McKane, A. J. & Tarnita, C. E., 9 Aug 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 32, p. E4745–E4754 32 p.

Research output: Contribution to journalArticle

Open Access
File
Demographics
Reversal
Evolutionary theory
Game-theoretic models
Extinction
20 Citations (Scopus)
105 Downloads (Pure)
Open Access
File
single nucleotide polymorphism
Single Nucleotide Polymorphism
polymorphism
exons
Exons
1 Citation (Scopus)
120 Downloads (Pure)
Open Access
File
Facility Regulation and Control
Control facilities
disasters
Disasters
Disaster

Dynamik und räumliche Muster forstlicher Standorte in Deutschland. Ergebnisse der Bodenzustandserhebung im Wald 2006 bis 2008. Thuenen Report 43. Kapitel 12: Kronenzustand - Steuergrössen und Raum-Zeit-Entwicklung von 1989-2014

Translated title of the contribution: Dynamic and spatial pattern of soil under forest in Germany. Results of the national survey of soil under forest 2006 until 2008. Thuenen Report 43. : Chapter 12: The state of tree crowns - controlling factors and space-time trend between 1989 and 2014Eickenscheidt, N., Augustin, N. & Wellbrock, N., 2016, Thünen-Institut. 82 p.

Research output: Book/ReportOther report

Open Access
Crowns
Germany
Soil
Forests
Surveys and Questionnaires
7 Citations (Scopus)
114 Downloads (Pure)

Efficient estimation and prediction for the Bayesian binary spatial model with flexible link functions

Roy, V., Evangelou, E. & Zhu, Z., Mar 2016, In : Biometrics. 72, 1, p. 289-298

Research output: Contribution to journalArticle

File
Generalized Linear Mixed Model
Link Function
Bayes Theorem
Efficient Estimation
Spatial Model
89 Downloads (Pure)

Equilibrium interbank lending networks

Xiao, D. & Krause, A., 2016, 2016 IEEE Congress on Evolutionary Computation (CEC). p. 4543-4550 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Lending
Network equilibrium
Solvency
Decision making
Network formation
19 Citations (Scopus)
252 Downloads (Pure)

Evidence for host-genotype associations of Borrelia burgdorferi sensu stricto

Mechai, S., Margos, G., Feil, E. J., Barairo, N., Lindsay, L. R., Michel, P. & Ogden, N. H., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149345.

Research output: Contribution to journalArticle

Open Access
File
Borrelia burgdorferi
Mammals
Genotype
genotype
Peromyscus
14 Citations (Scopus)

Evolutionary genetics of maternal effects

Wolf, J. B. & Wade, M. J., 1 Apr 2016, In : Evolution. 70, 4, p. 827-839 13 p.

Research output: Contribution to journalArticle

Open Access
maternal effect
Inbreeding
phenotype
inbreeding
Phenotype
9 Citations (Scopus)
93 Downloads (Pure)

From empirical data to time-inhomogeneous continuous Markov processes

Lencastre, P., Raischel, F., Rogers, T. & Lind, P. G., 17 Mar 2016, In : Physical Review E. 93, 3, 032135.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
78 Downloads (Pure)

Front Propagation at the Nematic-Isotropic Transition Temperature

Majumdar, A., Milewski, P. A. & Spicer, A., 19 Jul 2016, In : SIAM Journal on Applied Mathematics. 76, 4, p. 1296-1320 25 p.

Research output: Contribution to journalArticle

Open Access
File
Front Propagation
Superconducting transition temperature
Initial conditions
Boundary conditions
Droplet
3 Citations (Scopus)
95 Downloads (Pure)

Functional constraints on SoxE proteins in neural crest development: the importance of differential expression for evolution of protein activity

Lee, E. M., Yuan, T., Ballim, R. D., Nguyen, K., Kelsh, R. N., Medeiros, D. M. & McCauley, D. W., 1 Oct 2016, In : Developmental Biology. 418, 1, p. 166-178

Research output: Contribution to journalArticle

Open Access
File
Neural Crest
Lampreys
Vertebrates
Proteins
Lancelets
14 Citations (Scopus)
46 Downloads (Pure)

Generating power from transdermal extracts using a multi-electrode miniature enzymatic fuel cell

Du Toit, H., Rashidi, R. B., Ferdani, D. W., Delgado-Charro, M. B., Sangan, C. M. & Di Lorenzo, M., 15 Apr 2016, In : Biosensors and Bioelectronics. 78, p. 411-417 7 p.

Research output: Contribution to journalArticle

Open Access
Enzymatic fuel cells
Electrodes
Equipment and Supplies
Glucose
Electric Power Supplies

Genetic structure within Septobasidium colonies suggests outcrossing and frequent non-self-fusion

Henk, D. A. & Vilgalys, R., 8 Sep 2016, In : Fungal Genomics and Biology. 6, 2, p. 143

Research output: Contribution to journalArticle

Open Access
Septobasidium
outcrossing
insects
genotyping
fungi
8 Citations (Scopus)

Genomic variations leading to alterations in cell morphology of Campylobacter spp

Esson, D., Mather, A. E., Scanlan, E., Gupta, S., De Vries, S. P. W., Bailey, D., Harris, S. R., McKinley, T. J., Méric, G., Berry, S. K., Mastroeni, P., Sheppard, S. K., Christie, G., Thomson, N. R., Parkhill, J., Maskell, D. J. & Grant, A. J., 2 Dec 2016, In : Scientific Reports. 6, 38303.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)
97 Downloads (Pure)

Geographic variation in breeding system and environment predicts melanin-based plumage ornamentation of male and female Kentish plovers

Argüelles Ticó, A., Kupper, C., Kelsh, R. N., Kosztolányi, A., Szekely, T. & van Dijk, R. E., Jan 2016, In : Behavioral Ecology and Sociobiology. 70, 1, p. 49-60

Research output: Contribution to journalArticle

File
14 Citations (Scopus)
110 Downloads (Pure)

Global cooling as a driver of diversification in a major marine clade

Davis, K., Hill, J., Astrop, T. & Wills, M., 4 Oct 2016, In : Nature Communications. 7, p. 1-8 8 p., 13003.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
221 Downloads (Pure)

Household demographic determinants of Ebola epidemic risk

Adams, B., 7 Mar 2016, In : Journal of Theoretical Biology. 392, p. 99-106 8 p.

Research output: Contribution to journalArticle

Open Access
File
households
Determinant
demographic statistics
Demography
Quarantine
7 Citations (Scopus)

Impacts of survival and reproductive success on the long-term population viability of reintroduced great bustards Otis tarda in the UK

Ashbrook, K., Taylor, A., Jane, L., Carter, I. & Székely, T., Oct 2016, In : Oryx. 50, 4, p. 583-592 10 p.

Research output: Contribution to journalArticle

reproductive success
reintroduction
viability
wild population
rearing
98 Downloads (Pure)

Implementation of normative practical reasoning with durative actions

Shams, Z., Vos, M. D., Padget, J. & Vasconcelos, W., 13 Jul 2016, Coordination, Organizations, Institutions, and Norms in Agent Systems (COIN), 2015 International Workshops, COIN@AAMAS, Istanbul, Turkey, May 2015, COIN@IJCAI, Buenos Aires, Argentina, July 2015, Revised Selected Papers. Dignum, V., Noriega, P., Sensoy, M. & Simao Sichman, J. (eds.). Springer International Publishing, p. 335-353 19 p. (Lecture Notes in Computer Science; vol. 9628).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File

Improving weather forecasting accuracy by using r-adaptive methods coupled to data assimilation algorithms

Budd, C., Cullen, M. & Piccolo, C., 1 Jan 2016, UK Success Stories in Industrial Mathematics. Aston, P. J., Mulholland, A. J. & Tant, K. M. M. (eds.). Springer International Publishing, p. 11-18 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Data Assimilation
Adaptive Method
Weather
Forecast
Forecasting
8 Citations (Scopus)
97 Downloads (Pure)

Input-to-state stability of discrete-time Lur'e systems

Logemann, H. & Sarkans, E., 31 Dec 2016, In : SIAM Journal on Control and Optimization. 54, 3, p. 1739-1768 31 p.

Research output: Contribution to journalArticle

Open Access
File
Lur'e System
Stability Theory
Discrete-time Systems
Circle
Context
104 Downloads (Pure)

InstAL: An Institutional Action Language

Padget, J., Elakehal, E., Li, T. & De Vos, M., 2016, Social Coordination Frameworks for Social Technical Systems. Springer Verlag, Vol. 30. p. 101 124 p. (Law, Governance and Technology Series ).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
53 Downloads (Pure)

Instinct: a biologically inspired reactive planner for embedded environments

Wortham, R. H., Gaudl, S. & Bryson, J. J., 14 Jun 2016, Proceedings of the International Conference on Automated Planning and Scheduling (ICAPS): PlanRob Workshop 2016. 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Transparency
Robots
Data storage equipment
Costs
13 Citations (Scopus)

Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression

Wang, J., Singh, M., Sun, C., Besser, D., Prigione, A., Ivics, Z., Hurst, L. D. & Izsvák, Z., 1 Feb 2016, In : Nature Protocols. 11, 2, p. 327-346 20 p.

Research output: Contribution to journalArticle

Pluripotent Stem Cells
Stem cells
Endogenous Retroviruses
Cell Line
Induced Pluripotent Stem Cells
4 Citations (Scopus)
95 Downloads (Pure)

Limiting distribution of the rightmost particle in catalytic branching Brownian motion

Bocharov, S. & Harris, S. C., 4 Oct 2016, In : Electronic Communications in Probability. 21, 12 p., Paper no. 70.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Limiting Distribution
Branching
Gumbel Distribution
Dirac delta function
4 Citations (Scopus)

Localised pattern formation in a model for dryland vegetation

Dawes, J. H. P. & Williams, J. L. M., Jul 2016, In : Journal of Mathematical Biology. 73, 1, p. 63-90

Research output: Contribution to journalArticle

Vegetation
Pattern Formation
arid lands
Soil
vegetation
5 Citations (Scopus)
101 Downloads (Pure)

Measuring stratigraphic congruence across trees, higher taxa and time

O'Connor, A. & Wills, M., 30 Sep 2016, In : Systematic Biology. 65, 5, p. 792-811 20 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
52 Downloads (Pure)

Mesh adaptation on the sphere using optimal transport and the numerical solution of a Monge-Ampère type equation

Weller, H., Browne, P., Budd, C. & Cullen, M., 1 Mar 2016, In : Journal of Computational Physics. 308, p. 102-123 22 p.

Research output: Contribution to journalArticle

Open Access
mesh
Linearization
Resource allocation
Equations of motion
Anisotropy
13 Citations (Scopus)

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii

Farrer, R., Voelz, K., Henk, D., Johnston, S. A., Fisher, M., May, R. & Cuomo, C., 31 Dec 2016, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1709, p. 1-11 11 p., 20160021.

Research output: Contribution to journalArticle

Open Access
Cryptococcus gattii
Metagenomics
Virulence
Fungi
Northwestern United States