Research Output

2017

A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle

Awasthi Mishra, N., Droegemueller, C., Jagannathan, V., Keller, I., Wuthrich, D., Bruggmann, R., Beck, J., Schuetz, E., Brenig, B., Demmel, S., Moser, S., Signer-Hasler, H., Pienkowska-Schelling, A., Schelling, C., Sande, M., Rongen, R., Rieder, S., Kelsh, R. N., Mercader, N. & Leeb, T., 28 Jun 2017, In : PLoS ONE. 12, 6, 16 p., e0180170.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

A temperature compensation method for chlorophyll and phycocyanin fluorescence sensors in freshwater

Watras, C. J., Morrison, K. A., Rubsam, J. L., Hanson, P. C., Watras, A. J., Laliberte, G. D. & Milewski, P., Jul 2017, In : Limnology and Oceanography: Methods. 15, 7, p. 642-652

Research output: Contribution to journalArticle

1 Citation (Scopus)

Automated multi-level governance compliance checking

King, T. C., De Vos, M., Dignum, V., Jonker, C. M., Li, T., Padget, J. & van Riemsdijk, M. B., 30 Nov 2017, In : Autonomous Agents and Multi-Agent Systems. 31, 6, p. 1283-1343 61 p.

Research output: Contribution to journalArticle

Open Access
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3 Citations (Scopus)
132 Downloads (Pure)

Bioequivalence methodologies for topical drug products: in vitro and ex vivo studies with a cortiscosteroid and an anti-fungal drug

Bastos Leal, L., Cordery, S. F., Delgado-Charro, M. B., Bunge, A. L. & Guy, R. H., Apr 2017, In : Pharmaceutical Research. 34, 4, p. 730-737 8 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Both maintenance and avoidance of RNA-binding protein interactions constrain coding region evolution

Savisaar, R. & Hurst, L., 1 May 2017, In : Molecular Biology and Evolution. 34, 5, p. 1110-1126

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
159 Downloads (Pure)

Branching Brownian motion with absorption and the all-time minimum of branching Brownian motion with drift

Berestycki, J., Brunet, É., Harris, S. C. & Miłoś, P., 15 Sep 2017, In : Journal of Functional Analysis. 273, 6, p. 2107-2143 37 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
117 Downloads (Pure)

Characterizing tipping in a stochastic reduced stommel-type model in higher-dimensions

Budd, C., Glendinning, P., Hill, K. & Kuske, R., 2017, Extended Abstracts Spring 2016: Non Smooth Dynamics. Columbo, A., Jeffrey, M. R., Lazaro, J. T. & Olm, J. M. (eds.). Birkhauser, p. 25-29 5 p. (Trends in Mathematics; vol. 8).

Research output: Chapter in Book/Report/Conference proceedingChapter

Comparative analyses of selection operating on non-translated intergenic regions of diverse bacterial species

Thorpe, H. A., Bayliss, S. C., Hurst, L. D. & Feil, E. J., 5 May 2017, In : Genetics. 206, 1, p. 363-376 195784.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Demographic noise slows down cycles of dominance

Yang, Q., Rogers, T. & Dawes, J. H. P., 7 Nov 2017, In : Journal of Theoretical Biology. 432, p. 157-168 12 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
114 Downloads (Pure)

Dental data perform relatively poorly in reconstructing mammal phylogenies: Morphological partitions evaluated with molecular benchmarks

Sansom, R. S., Wills, M. A. & Williams, T., 30 Sep 2017, In : Systematic Biology. 66, 5, p. 813-822 10 p.

Research output: Contribution to journalArticle

Open Access
File
17 Citations (Scopus)
135 Downloads (Pure)

Depletion of somatic mutations in splicing-associated sequences in cancer genomes

Hurst, L. & Batada, N. N., 7 Nov 2017, In : Genome Biology. 18, 1, 12 p., 213.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Designing and implementing transparency for real time inspection of autonomous robots

Theodorou, A., Wortham, R. H. & Bryson, J. J., 30 May 2017, In : Connection Science. 29, 3, p. 230-241 12 p.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
389 Downloads (Pure)

Diagnostics of circumstellar grains in geometric models – I. Structure and composition

Dawes, J. & Greaves, J. S., 11 May 2017, In : Monthly Notices of the Royal Astronomical Society. 467, 1, p. 218-225 8 p.

Research output: Contribution to journalArticle

Open Access

Differences between hard and soft phylogenetic data

Sansom, R. S. & Wills, M. A., 20 Dec 2017, In : Proceedings of the Royal Society B: Biological Sciences. 284, 1869, 20172150.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)
Open Access
File
9 Citations (Scopus)
44 Downloads (Pure)

Direct determination of the mutation rate in the bumblebee reveals evidence for weak recombination-associated mutation and an approximate rate constancy in insects

Liu, H., Jia, Y., Sun, X., Tian, D., Hurst, L. D. & Yang, S., 1 Jan 2017, In : Molecular Biology and Evolution. 34, 1, p. 119-130 12 p.

Research output: Contribution to journalArticle

Open Access
20 Citations (Scopus)

Disturbed Placental Imprinting in Preeclampsia Leads to Altered Expression of DLX5, a Human-Specific Early Trophoblast Marker

Zadora, J., Singh, M., Herse, F., Przybyl, L., Haasse, N., Golic, M., Yung, H. W., Huppertz, B., Cartwright, J. E., Whitley, G., Johnsen, G. M., Levi, G., Isbruch, A., Schulz, H., Luft, F. C., Muller, D. N., Staff, A. C., Hurst, L., Dechend, R. & Izsvak, Z., 7 Nov 2017, In : Circulation. 136, 19, p. 1824-1839 16 p.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Do antibiotics and antibiotic resistance genes play a role in enhancing antimicrobial resistance in wastewater?

Castrignano, E., Feil, E., Lewis, S., Cartwright, N., Barden, R. & Kasprzyk-Hordern, B., 2017.

Research output: Contribution to conferencePoster

Draft genome sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 new isolates belonging to the genus Salinivibrio

López-Hermoso, C., de la Haba, R. R., Cristina Sánchez-Porro, S-P., Bayliss, S. C., Feil, E. J. & Ventosa, A., 1 Jul 2017, In : Genome announcements. 5, 27, e00244-17.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Dual-specificity phosphatase 5 controls the localized inhibition, propagation, and transforming potential of ERK signaling

Kidger, A. M., Rushworth, L. K., Stellzig, J., Davidson, J., Bryant, C. J., Bayley, C., Caddye, E., Rogers, T., Keyse, S. M. & Caunt, C. J., 17 Jan 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 3, p. E317-E326 10 p.

Research output: Contribution to journalArticle

Open Access
26 Citations (Scopus)
Open Access
File
106 Downloads (Pure)

Dynamics of the discrete Seno population model: Combined effects of harvest timing and intensity on population stability

Franco, D., Logemann, H., Perán, J. & Segura, J., 1 Aug 2017, In : Applied Mathematical Modelling. 48, p. 885-898 14 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Efficient parameter sensitivity computation for spatially extended reaction networks

Lester, C., Yates, C. & Baker, R. E., 28 Jan 2017, In : Journal of Chemical Physics. 146, 4, 044106.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
34 Downloads (Pure)

Eight great reasons to do mathematics

Budd, C., 2017, Recent Progress and Modern Challenges in Applied Mathematics, Modeling and Computational Science. . Melnik, R., Makarov, R. & Belair, J. (eds.). New York, U. S. A.: Springer New York, p. 245-262 18 p. (Fields Institute Communications; vol. 79).

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineering of PEDF-Expressing Primary Pigment Epithelial Cells by the SB Transposon System Delivered by pFAR4 Plasmids

Thumann, G., Harmening, N., Prat-Souteyrand, C., Marie, C., Pastor, M., Sebe, A., Miskey, C., Hurst, L. D., Diarra, S., Kropp, M., Walter, P., Scherman, D., Ivics, Z., Izsvák, Z. & Johnen, S., 17 Mar 2017, In : Molecular Therapy - Nucleic Acids. 6, p. 302-314 13 p.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Enterobacteriaceae: joining the dots with pan-European epidemiology

Feil, E. J., 1 Feb 2017, In : The Lancet Infectious Diseases. 17, 2, p. 118-119 2 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Estimating adult sex ratios in nature

Ancona, S., Dénes, F. V., Krüger, O., Székely, T. & Beissinger, S. R., 19 Sep 2017, In : Proceedings of the Royal Society B: Biological Sciences. 372, 1729, 20160313.

Research output: Contribution to journalReview article

30 Citations (Scopus)

Estimating the prevalence of functional exonic splice regulatory information

Savisaar, R. & Hurst, L. D., 1 Sep 2017, In : Human Molecular Genetics. 136, 9, p. 1059-1078 20 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Evidence for a rapid recovery of snakes following the Cretaceous-Paleogene mass extinction

Klein, C., Pisani, D., Field, D., Wills, M. & Longrich, N., 2017.

Research output: Contribution to conferenceAbstract

Extremely low Plasmodium prevalence in wild plovers and coursers from Cape Verde and Madagascar

Martínez-De La Puente, J., Eberhart-Phillips, L. J., Cristina Carmona-Isunza, M., Zefania, S., Navarro, M. J., Kruger, O., Hoffman, J. I., Székely, T. & Figuerola, J., 8 Jun 2017, In : Malaria Journal. 16, 1, 243.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Faraday wave-droplet dynamics: discrete-time analysis

Durey, M. & Milewski, P., 25 Jun 2017, In : Journal of Fluid Mechanics. 821, p. 296-328 33 p.

Research output: Contribution to journalArticle

Open Access
25 Citations (Scopus)

Flow structure beneath rotational water waves with stagnation points

Ribeiro, R., Milewski, P. A. & Nachbin, A., 10 Feb 2017, In : Journal of Fluid Mechanics. 812, p. 792-814 23 p.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
116 Downloads (Pure)

Generalized additive models for gigadata: modelling the UK black smoke network daily data

Wood, S. N., Li, Z., Shaddick, G. & Augustin, N. H., 25 Apr 2017, In : Journal of the American Statistical Association. 112, 519, p. 1199-1210 12 p.

Research output: Contribution to journalArticle

Open Access
28 Citations (Scopus)

Genetic isolation in an endemic African habitat specialist

dos Remedios, N., Küpper, C., Székely, T., Baker, N., Versfeld, W. & Lee, P. L. M., 1 Oct 2017, In : Ibis. 159, 4, p. 792-802 11 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Pinholt, M., Gumpert, H., Bayliss, S., Nielsen, J. B., Vorobieva, V., Pedersen, M., Feil, E., Worning, P. & Westh, H., 1 Jan 2017, In : Journal of Antimicrobial Chemotherapy. 72, 1, p. 40-47 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Genomic regions controlling shape variation in the first upper molar of the house mouse

Pallares, L. F., Ledevin, R., Pantalacci, S., Turner, L., Steingrimsson, E. & Renaud, S., 9 Nov 2017, In : eLife. 6, p. 1-18 18 p., e29510.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Gnawing at striping - how rodents evolve striped patterns

Kelsh, R. N. & Petratou, K., 1 Mar 2017, In : Pigment Cell & Melanoma Research. 30, 2, p. 181-182

Research output: Contribution to journalArticle

Open Access

Heterogeneous micro-structure of percolation in sparse networks

Kühn, R. & Rogers, T., 28 Aug 2017, In : EPL (Europhysics Letters). 118, 6, p. 1 - 7 7 p., 68003.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
74 Downloads (Pure)

High fidelity: Extra-pair fertilisations in eight Charadrius plover species are not associated with parental relatedness or social mating system

Maher, K. H., Eberhart-Phillips, L. J., Kosztolányi, A., Dos Remedios, N., Carmona-Isunza, M. C., Cruz-López, M., Zefania, S., St Clair, J. J. H., Alrashidi, M., Weston, M. A., Serrano-Meneses, M. A., Krüger, O., Hoffman, J. I., Székely, T., Burke, T. & Kupper, C., 8 Jun 2017, In : Journal of Avian Biology.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Hunting cooperation and Allee effects in predators

Teixeira Alves, M. & Hilker, F. M., 21 Apr 2017, In : Journal of Theoretical Biology. 419, p. 13-22 10 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)
File
14 Citations (Scopus)
245 Downloads (Pure)

Insulation and wiring specificity of BceR-like response regulators and their target promoters in Bacillus subtilis

Fang, C., Nagy-Staron, A., Grafe, M., Heermann, R., Jung, K., Gebhard, S. & Mascher, T., Apr 2017, In : Molecular Microbiology. 104, 1, p. 16-31

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
80 Downloads (Pure)

Invasions Slow Down or Collapse in the Presence of Reactive Boundaries

Minors, K. & Dawes, J. H. P., Oct 2017, In : Bulletin of Mathematical Biology . 79, 10, p. 2197–2214 18 p.

Research output: Contribution to journalArticle

Open Access

Iontophoresis for therapeutic drug delivery and non-invasive sampling applications

Merino, V., Castellano, A. L. & Delgado-Charro, M. B., 4 May 2017, Percutaneous penetration enhancers. Physical methods in percutaneous enhancement, . Springer, p. 77-101 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Levels of extra-pair paternity are associated with parental care in penduline tits (Remizidae)

Ball, A. D., van Dijk, R. E., Lloyd, P., Pogány, Á., Dawson, D. A., Dorus, S., Bowie, R. C. K., Burke, T. & Székely, T., 1 Apr 2017, In : Ibis. 159, 2, p. 449-455 7 p.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Low-gain Integral Control for Multi-Input, Multi-Output Linear Systems with Input Nonlinearities

Guiver, C., Logemann, H. & Townley, S., 1 Sep 2017, In : IEEE Transactions on Automatic Control. 62, 9, p. 4776 - 4783 7953659.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
92 Downloads (Pure)

Modelling a response as a function of high frequency count data: the association between physical activity and fat mass

Augustin, N. H., Mattocks, C., Faraway, J. J., Greven, S. & Ness, A. R., 1 Oct 2017, In : Statistical Methods in Medical Research. 26, 5, p. 2210-2226 17 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
73 Downloads (Pure)

Morphological and genetic differentiation among Kentish plover Charadrius alexandrinus populations in Macaronesia

Almalki, M., Kupán, K., Carmona-Isunza, M. C., López, P., Veiga, A., Kosztolányi, A., Székely, T. & Küpper, C., 1 Jan 2017, In : Ardeola. 64, 1, p. 3-16 14 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Non-extensive condensation in reinforced branching processes

Dereich, S., Mailler, C. & Morters, P., 31 Aug 2017, In : Annals of Applied Probability. 27, 4, p. 2539-2568 30 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
39 Downloads (Pure)

Non-smooth hopf-type and grazing bifurcations arising from impact/friction contact events

Mora, K. & Budd, C., 2017, Extended Abstracts Spring 2016: Non Smooth Dynamics. Columbo, A., Jeffrey, M. R., Lazaro, J. T. & Olm, J. M. (eds.). Birkhäuser, p. 129-134 6 p. (Trends in Mathematics; vol. 8).

Research output: Chapter in Book/Report/Conference proceedingChapter