Research Output

2011

A systems biology approach to in vivo dissection of the gene regulatory network (GRN) underlying melanocyte differentiation in zebrafish

Vibert, L., Nikkaido, M., Greenhill, E. R. & Kelsh, R. N., 2011, In : Pigment Cell & Melanoma Research. 24, 4, p. 820

Research output: Contribution to journalArticle

A temperature compensation method for CDOM fluorescence sensors in freshwater

Watras, C. J., Hanson, P. C., Stacy, T. L., Morrison, K. M., Mather, J., Hu, Y. H. & Milewski, P., 28 Oct 2011, In : Limnology and Oceanography: Methods. 9, JULY, p. 296-301 6 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)

Atypical AT skew in firmicute genomes results from selection and not from mutation

Charneski, C. A., Honti, F., Bryant, J. M., Hurst, L. D. & Feil, E. J., 15 Sep 2011, In : Plos Genetics. 7, 9, 14 p., e1002283.

Research output: Contribution to journalArticle

11 Citations (Scopus)

A unified framework for Schelling's model of segregation

Rogers, T. & McKane, A. J., Jul 2011, In : Journal of Statistical Mechanics-Theory and Experiment. 2011, July, 21 p., P07006.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Automatic music composition using answer set programming

Boenn, G., Brain, M., De Vos, M. & Ffitch, J., Mar 2011, In : Theory and Practice of Logic Programming. 11, 2-3, p. 397-427 31 p.

Research output: Contribution to journalArticle

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17 Citations (Scopus)
116 Downloads (Pure)

Birt Hogg-Dube Syndrome-Associated FLCN Mutations Disrupt Protein Stability

Nahorski, M. S., Reiman, A., Lim, D. H. K., Nookala, R. K., Seabra, L., Lu, X. H., Fenton, J., Boora, U., Nordenskjold, M., Latif, F., Hurst, L. D. & Maher, E. R., Aug 2011, In : Human Mutation. 32, 8, p. 921-929 9 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Breathers in a pinned mechanical lattice

Green, S. C., Budd, C. J. & Hunt, G. W., 2011, In : SIAM Journal on Applied Dynamical Systems. 10, 1, p. 66-91 26 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Breeding ecology of the Kentish Plover, Charadrius alexandrinus, in the Farasan Islands, Saudi Arabia (Aves: Charadriiformes)

AlRashidi, M., Kosztolanyi, A., Shobrak, M. & Szekely, T., 2011, In : Zoology in the Middle East. 53, p. 15-24 10 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Coevolution of ABC Transporters and Two-Component Regulatory Systems as Resistance Modules against Antimicrobial Peptides in Firmicutes Bacteria

Dintner, S., Staron, A., Berchtold, E., Petri, T., Mascher, T. & Gebhard, S., 1 Aug 2011, In : Journal of Bacteriology. 193, 15, p. 3851-3862

Research output: Contribution to journalArticle

Open Access
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79 Citations (Scopus)
196 Downloads (Pure)

Common Reservoirs for Penicillium marneffei Infection in Humans and Rodents, China

Cao, C., Liang, L., Wang, W., Luo, H., Huang, S., Liu, D., Xu, J., Henk, D. A. & Fisher, M. C., 2011, In : Emerging Infectious Diseases. 17, 2, p. 209-214

Research output: Contribution to journalArticle

42 Citations (Scopus)

Competition is bad for consumers: Analysis of an artificial payment card market

Alexandrova-Kabadjova, B., Tsang, E. & Krause, A., Mar 2011, In : Journal of Advanced Computational Intelligence and Intelligent Informatics. 15, 2, p. 188-196 9 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Conflict between genetic and phenotypic differentiation: The evolutionary history of a 'lost and rediscovered' shorebird

Rheindt, F. E., Szekely, T., Edwards, S. V., Lee, P. L. M., Burke, T., Kennerley, P. R., Bakewell, D. N., Alrashidi, M., Kosztolanyi, A., Weston, M. A., Liu, W. T., Lei, W. P., Shigeta, Y., Javed, S., Zefania, S. & Kupper, C., 2011, In : PLoS ONE. 6, 11, e26995.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Consistent avoidance of human disturbance over large geographical distances by a migratory bird

Vegvari, Z., Barta, Z., Mustakallio, P. & Szekely, T., 23 Dec 2011, In : Biology Letters. 7, 6, p. 814-817 4 p.

Research output: Contribution to journalArticle

Open Access
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12 Citations (Scopus)
113 Downloads (Pure)
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11 Citations (Scopus)
82 Downloads (Pure)

Deciphering the cellular and molecular roles of cellular nucleic acid binding protein during cranial neural crest development

Weiner, A. M. J., Sdrigotti, M. A., Kelsh, R. N. & Calcaterra, N. B., 2011, In : Development Growth & Differentiation. 53, 8, p. 934-947

Research output: Contribution to journalArticle

16 Citations (Scopus)

Development of a methodology for understanding the potency of risk connectivity

Allan, N. & Yin, Y., Apr 2011, In : Journal of Management in Engineering. 27, 2, p. 75-79 5 p.

Research output: Contribution to journalArticle

Open Access
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11 Citations (Scopus)
124 Downloads (Pure)

Diet-dependent genetic and genomic imprinting effects on obesity in mice

Cheverud, J. M., Lawson, H. A., Fawcett, G. L., Wang, B., Pletscher, L. S., Fox, A. R., Maxwell, T. J., Ehrich, T. H., Kenney-Hunt, J. P., Wolf, J. B. & Semenkovich, C. F., Jan 2011, In : Obesity. 19, 1, p. 160-170 11 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Differentiated melanocyte cell division occurs in vivo and is promoted by mutations in Mitf

Taylor, K. L., Lister, J. A., Zeng, Z. Q., Ishizaki, H., Anderson, C., Kelsh, R. N., Jackson, I. J. & Patton, E. E., 2011, In : Development. 138, 16, p. 3579-3589

Research output: Contribution to journalArticle

27 Citations (Scopus)

Disentangling prenatal and postnatal maternal genetic effects reveals persistent prenatal effects on offspring growth in mice

Wolf, J. B., Leamy, L. J., Roseman, C. C. & Cheverud, J. M., 2011, In : Genetics. 189, 3, p. 1069-82 14 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Distinct physiological and behavioural functions for parental alleles of imprinted Grb10

Garfield, A. S., Cowley, M., Smith, F. M., Moorwood, K., Stewart-Cox, J. E., Gilroy, K., Baker, S., Xia, J., Dalley, J. W., Hurst, L. D., Wilkinson, L. S., Isles, A. R. & Ward, A., 27 Jan 2011, In : Nature. 469, 7331, p. 534-538 5 p.

Research output: Contribution to journalArticle

123 Citations (Scopus)

Dynamics near a periodically forced robust heteroclinic cycle

Tsai, T. L. & Dawes, J. H. P., 2011, In : Journal of Physics: Conference Series. 286, 1, 012057.

Research output: Contribution to journalArticle

Open Access
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2 Citations (Scopus)
109 Downloads (Pure)

Emergent behaviour in large electrical networks

Almond, D., Budd, C. J. & McCullen, N. J., 2011, Approximation Algorithms for Complex Systems. Georgoulis, E. H., Iske, A. & Levesley, J. (eds.). Springer, p. 3-26 24 p. (Springer Proceedings in Mathematics ; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Error prevention and mitigation as forces in the evolution of genes and genomes

Warnecke, T. & Hurst, L. D., Dec 2011, In : Nature Reviews Genetics. 12, 12, p. 875-881 7 p.

Research output: Contribution to journalArticle

Open Access
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25 Citations (Scopus)
131 Downloads (Pure)

Estimation and prediction for spatial generalized linear mixed models using high order Laplace approximation

Evangelou, E., Zhu, Z. & Smith, R. L., Nov 2011, In : Journal of Statistical Planning and Inference. 141, 11, p. 3564-3577 14 p.

Research output: Contribution to journalArticle

Open Access
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13 Citations (Scopus)
140 Downloads (Pure)
18 Citations (Scopus)

General introduction

Seth, A. K., Bryson, J. J. & Prescott, T. J., 1 Jan 2011, Modelling Natural Action Selection. Seth, A. K., Prescott, T. J. & Bryson, J. J. (eds.). Cambridge University Press, p. 1-4 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic diversity, recombination, and divergence in animal associated Penicillium dipodomyis

Henk, D. A. & Fisher, M. C., 5 Aug 2011, In : PLoS ONE. 6, 8, 6 p., e22883.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Genetic effects at pleiotropic loci are context-dependent with consequences for the maintenance of genetic variation in populations

Lawson, H. A., Cady, J. E., Partridge, C., Wolf, J. B., Semenkovich, C. F. & Cheverud, J. M., Sep 2011, In : Plos Genetics. 7, 9, e1002256.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Genetic factors and diet affect long-bone length in the F-34 LG,SM advanced intercross

Norgard, E. A., Lawson, H. A., Pletscher, L. S., Wang, B., Brooks, V. R., Wolf, J. B. & Cheverud, J. M., Apr 2011, In : Mammalian Genome. 22, 3-4, p. 178-196 19 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Hydration and N-acetyl-l-cysteine alter the microstructure of human nail and bovine hoof: implications for drug delivery

Nogueiras-Nieto, L., Gómez-Amoza, J. L., Delgado-Charro, M. B. & Otero-Espinar, F. J., 20 Dec 2011, In : Journal of Controlled Release. 156, 3, p. 337-344 8 p.

Research output: Contribution to journalArticle

Open Access
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43 Citations (Scopus)
140 Downloads (Pure)

Hydroelastic solitary waves in deep water

Milewski, P. A., Vanden-Broeck, J-M. & Wang, Z., Jul 2011, In : Journal of Fluid Mechanics. 679, p. 628-640 13 p.

Research output: Contribution to journalArticle

File
46 Citations (Scopus)
123 Downloads (Pure)

Indirect sampled-data control with sampling period adaptation

Ilchmann, A., Ke, Z. Q. & Logemann, H., 2011, In : International Journal of Control. 84, 2, p. 424-431 8 p.

Research output: Contribution to journalArticle

Open Access
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120 Downloads (Pure)

Introduction to Part I: Rational and optimal decision making

Seth, A. K., Prescott, T. J. & Bryson, J. J., 1 Jan 2011, Modelling Natural Action Selection. Seth, A. K., Prescott, T. J. & Bryson, J. J. (eds.). Cambridge University Press, p. 7-11 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction to Part II: Computational neuroscience models

Prescott, T. J., Bryson, J. J. & Seth, A. K., 1 Jan 2011, Modelling Natural Action Selection. Seth, A. K., Prescott, T. J. & Bryson, J. J. (eds.). Cambridge University Press, p. 169-175 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction to Part III: Action selection in social contexts

Bryson, J. J., Prescott, T. J. & Seth, A. K., 1 Jan 2011, Modelling Natural Action Selection. Seth, A. K., Prescott, T. J. & Bryson, J. J. (eds.). Cambridge University Press, p. 421-426 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction to special issue on reflections in nonlinear mechanics

Budd, C., Champneys, A., Lord, G. & Virgin, L., Feb 2011, In : IMA Journal of Applied Mathematics. 76, 1, p. 1 1 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Just an artifact: why machines are perceived as moral agents

Bryson, J. J. & Kime, P. P., 2011, Proceedings of the Twenty-Second International Joint Conference on Artificial Intelligence: Barcelona, Catalonia, Spain, 16–22 July 2011. Walsh, T. (ed.). Menlo Park, CA, USA: AAAI Press, Vol. 2. p. 1641-1646 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

15 Citations (Scopus)
4 Citations (Scopus)

Legal modelling and reasoning using institutions

De Vos, M., Padget, J. & Satoh, K., 2011, New Frontiers in Artificial Intelligence - JSAI-isAI 2010 Workshops, LENLS, JURISIN, AMBN, ISS, Revised Selected Papers. Heidelberg: Springer, Vol. 6797 LNAI. p. 129-140 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
10 Citations (Scopus)
118 Downloads (Pure)

Low Diversity Cryptococcus neoformans Variety grubii Multilocus Sequence Types from Thailand Are Consistent with an Ancestral African Origin

Simwami, S. P., Khayhan, K., Henk, D. A., Aanensen, D. M., Boekhout, T., Hagen, F., Brouwer, A. E., Harrison, T. S., Donnelly, C. A. & Fisher, M. C., 2011, In : PLoS Pathogens. 7, 4, e1001343.

Research output: Contribution to journalArticle

49 Citations (Scopus)

Market structure and information in payment card markets

Alexandrova-Kabadjova, B., Tsang, E. & Krause, A., Aug 2011, In : International Journal of Automation and Computing. 8, 3, p. 364-370 7 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Maximum-entropy moment-closure for stochastic systems on networks

Rogers, T., May 2011, In : Journal of Statistical Mechanics-Theory and Experiment. 2011, May, 20 p., P05007.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Metabolic trade-offs and the maintenance of the fittest and the flattest

Beardmore, R. E., Gudelj, I., Lipson, D. A. & Hurst, L. D., 21 Apr 2011, In : Nature. 472, 7343, p. 342-346 5 p.

Research output: Contribution to journalArticle

60 Citations (Scopus)

Mitf mutations promote differentiated cell division and melanoma in zebrafish

Taylor, K., Richardson, J., Kelsh, R., Jackson, I., Lister, J. & Patton, E. E., 2011, In : Pigment Cell & Melanoma Research. 24, 4, p. 797

Research output: Contribution to journalArticle

Modelling Natural Action Selection

Seth, A. K. (ed.), Prescott, T. J. (ed.) & Bryson, J. J. (ed.), Nov 2011, Cambridge: Cambridge University Press. 560 p.

Research output: Book/ReportBook

9 Citations (Scopus)

Modelling obesity as a function of weekly physical activity profiles measured by Actigraph accelerometers

Augustin, N. H., Mattocks, C., Riddoch, C., Ness, A. & Faraway, J., 2011, 2nd International Conference on Ambulantory Monitoring and Physical Activity (ICAMPAM 2011). Programme and Abstracts. Glasgow: Glasgow Caledonian University, p. 38 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Modulation of the ligand-independent traffic of Notch by Axin and Apc contributes to the activation of Armadillo in Drosophila

Muñoz-Descalzo, S., Tkocz, K., Balayo, T. & Martinez-Arias, A., 15 Apr 2011, In : Development. 138, 8, p. 1501-1506 6 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Molecular genetics: The sound of silence

Hurst, L. D., 31 Mar 2011, In : Nature. 471, 7340, p. 582-583 2 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)