Research Output 1977 2020

2013
77 Citations (Scopus)

A membrane-associated β-catenin/Oct4 complex correlates with ground-state pluripotency in mouse embryonic stem cells

Faunes, F., Hayward, P., Munoz-Descalzo, S., Chatterjee, S. S., Balayo, T., Trott, J. (Translator), Christoforou, A., Ferrer-Vaquer, A., Hadjantonakis, A-K., Dasgupta, R. & Martinez Arias, A., 15 Mar 2013, In : Development. 2013, 140, p. 1171-1183

Research output: Contribution to journalArticle

11 Citations (Scopus)
104 Downloads (Pure)

A model-based approach to the automatic revision of secondary legislation

Li, T., Balke, T., De Vos, M., Padget, J. & Satoh, K., 2013, ICAIL '13 Proceedings of the Fourteenth International Conference on Artificial Intelligence and Law. NY, USA: Association for Computing Machinery, p. 202-206 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
legislation
Law
programming
logic
scenario
99 Downloads (Pure)

An agent-based simulation approach to comparative analysis of enforcement mechanisms

Balke, T., De Vos, M. & Padget, J., 2013, Coordination, Organizations, Institutions, and Norms in Agent Systems VIII: 14th International Workshop, COIN 2012, Held Co-located with AAMAS 2012, Valencia, Spain, June 5, 2012, Revised Selected Paper. Berlin, Germany: Springer, p. 53-70 18 p. (Lecture Notes in Computer Science; vol. 7756).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Law enforcement
Statistical methods
Social sciences
Multi agent systems
Mobile phones
27 Citations (Scopus)
90 Downloads (Pure)

Anaplastic Lymphoma Kinase is required for neurogenesis in the developing central nervous system of zebrafish

Yao, S., Cheng, M., Zhang, Q., Wasik, M., Kelsh, R. & Winkler, C., 10 May 2013, In : PLoS ONE. 8, 5, e63757.

Research output: Contribution to journalArticle

Open Access
File
neurogenesis
Neurogenesis
Neurology
Zebrafish
lymphoma
7 Citations (Scopus)
Chlamydia Infections
Chlamydia
Infection
Optimal Control
Contact Tracing
6 Citations (Scopus)

Areas of high diversity for the world's inland-breeding waterbirds

Williamson, L., Hudson, M., O'Connell, M., Davidson, N., Young, R., Amano, T. & Székely, T., Jun 2013, In : Biodiversity and Conservation. 22, 6-7, p. 1501-1512 12 p.

Research output: Contribution to journalArticle

water birds
breeding
protected area
wetland
conservation areas
14 Citations (Scopus)
95 Downloads (Pure)

Are there species smaller than 1 mm?

G. Rossberg, A., Rogers, T. & McKane, A. J., 22 Sep 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1767, 20131248.

Research output: Contribution to journalArticle

Open Access
File
Biodiversity
Mutation Rate
Population Density
meiofauna
Genome
9 Citations (Scopus)
102 Downloads (Pure)

A spatial preferential attachment model with local clustering

Morters, P. & Jacob, E., 2013, Algorithms and Models for the Web Graph.: Proceedings of the 10th International Workshop, WAW 2013, Cambridge, MA, USA.. Springer, Vol. 8305. p. 14-25 (Lecture Notes in Computer Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

File
16 Citations (Scopus)

A systematic survey of expression and function of zebrafish frizzled genes

Nikaido, M., Law, E. W. P. & Kelsh, R. N., 29 Jan 2013, In : PLoS ONE. 8, 1, 54833.

Research output: Contribution to journalArticle

Neural Crest
Melanocytes
Zebrafish
Danio rerio
neural crest

Behaviour oriented design for real-time-strategy games: An approach on iterative development for STARCRAFT AI

Gaudl, S., Davies, S. & Bryson, J. J., 1 May 2013, Foundations of Digital Games Conference 2013 (FDG 2013). Foundations of Digital Games, p. 198-205 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)
84 Downloads (Pure)
Open Access
File
Balanced Truncation
Infinite-dimensional Systems
Error Bounds
Singular Values
Gap Metric
24 Citations (Scopus)
105 Downloads (Pure)

Characterization of a Regulatory Network of Peptide Antibiotic Detoxification Modules in Lactobacillus casei BL23

Revilla-Guarinos, A., Gebhard, S., Alcantara, C., Staron, A., Mascher, T. & Zuniga, M., 15 May 2013, In : Applied and Environmental Microbiology. 79, 10, p. 3160-3170

Research output: Contribution to journalArticle

Open Access
File
100 Citations (Scopus)

Clades reach highest morphological disparity early in their evolution

Hughes, M., Gerber, S. & Wills, M. A., 20 Aug 2013, In : Proceedings of the National Academy of Sciences of the United States of America (PNAS). 110, 34, p. 13875-13879 5 p.

Research output: Contribution to journalArticle

mass extinction
gravity
Phanerozoic
metazoan
meta-analysis
10 Citations (Scopus)
21 Downloads (Pure)

Combining Event- and State-based Norms: Extended Abstract

De Vos, M., Balke, T. & Satoh, K., 6 May 2013, p. 1157-1158. 2 p.

Research output: Contribution to conferencePaper

File
Large scale systems
2 Citations (Scopus)
95 Downloads (Pure)

Comment on "Bateman in nature: Predation on offspring reduces the potential for sexual selection"

Ramm, S. A., Jonker, R. M., Reinhold, K., Székely, T., Trillmich, F., Schmoll, T., Schielzeth, H. & Freckleton, R. P., 3 May 2013, In : Science. 340, 6132, p. 549

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
3 Citations (Scopus)

Comments on 'Log transformation: Application and interpretation in biomedical research'

Alexander, N. & Anaya-Izquierdo, K., 20 Sep 2013, In : Statistics in medicine. 32, 21, p. 3768-3769 2 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Complex dynamics in an eco-epidemiological model

Bate, A. M. & Hilker, F. M., Nov 2013, In : Bulletin of Mathematical Biology. 75, 11, p. 2059-2078 20 p.

Research output: Contribution to journalArticle

Epidemiological Model
Complex Dynamics
Limit Cycle
Torus
saddles
4 Citations (Scopus)

Computational information geometry in statistics: foundations

Anaya-Izquierdo, K., Critchley, F., Marriott, P. & Vos, P., 2013, Geometric Science of Information: First International Conference, Gsi 2013, Paris, France, August 28-30, 2013, Proceedings . Nielsen, F. & Barbaresco, F. (eds.). Berlin, Germany: Springer, Vol. Part IX. p. 311-318 8 p. (Lecture Notes in Computer Science; vol. 8085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Statistics
Geometry
1 Citation (Scopus)

Computational information geometry in statistics: mixture modelling

Anaya-Izquierdo, K., Critchley, F., Marriott, P. & Vos, P., 2013, Geometric Science of Information: First International Conference, GSI 2013, Paris, France, August 28-30, 2013. Proceedings. Nielsen, F. & Barbaresco, F. (eds.). Berlin, Germany: Springer, Vol. IX. p. 319-326 8 p. (Lecture Notes in Computer Science; vol. 8085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Information Geometry
Mixture Modeling
Statistical Modeling
Computational Geometry
High-dimensional
20 Downloads (Pure)

Computational Models for Normative Multi-Agent Systems

Alechina, N., Bassiliades, N., Dastani, M., De Vos, M., Logan, B., Mera, S., Morris-Martin, A. & Schapachnik, F., 2013, Normative Multi-Agent Systems. Andrighetto, G., Governatori, G., Noriega, P. & van der Torre, L. W. N. (eds.). Leibniz International Proceedings in Informatics, Vol. 4. p. 71-92 22 p. (Dagstuhl Follow-Ups).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
20 Citations (Scopus)
96 Downloads (Pure)

Consensus time and conformity in the adaptive voter model

Rogers, T. C. & Gross, T., 6 Sep 2013, In : Physical Review E. 88, 3, 030102.

Research output: Contribution to journalArticle

Open Access
File
Voter Model
Dynamical Phase Transition
Opinion Formation
Phenomenology
Scaling Behavior
8 Citations (Scopus)
61 Downloads (Pure)

Detecting conflicts in legal systems

Li, T., Balke, T., De Vos, M., Satoh, K. & Padget, J. A., 2013, New Frontiers in Artificial Intelligence : JSAI-isAI 2012 Workshops, LENLS, JURISIN, MiMI, Miyazaki, Japan, November 30 and December 1, 2012, Revised Selected Papers. Motomura, Y., Butler, A. & Bekki, D. (eds.). Berlin: Springer, p. 174-189 16 p. (Lecture Notes in Computer Science; vol. 7856).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
legal system
jurisdiction
scenario
private law
Law
2 Citations (Scopus)

Distributed quality of service provision using coalitions and the nash bargaining solution

Vatsikas, S., Armour, S., Lewis, T. & De Vos, M., 5 Mar 2013, In : IET Communications. 7, 4, p. 340-348 9 p.

Research output: Contribution to journalArticle

Quality of service
Outages
19 Citations (Scopus)

Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses

Woods, S., Coghlan, A., Rivers, D., Warnecke, T., Jeffries, S. J., Kwon, T., Rogers, A., Hurst, L. & Ahringer, J., 9 May 2013, In : Plos Genetics. 9, 5, e1003330.

Research output: Contribution to journalArticle

phenotype
Phenotype
gene
Genes
genes

Editorial: Onward and upward with PCMR

Arnheiter, H., Bosenberg, M. & Kelsh, R., 1 Jan 2013, In : Pigment Cell and Melanoma Research. 26, 1, p. 1 1 p.

Research output: Contribution to journalEditorial

9 Citations (Scopus)
110 Downloads (Pure)
Open Access
File
Dielectric Spectroscopy
Iontophoresis
Nails
Permeation
Hydration
9 Citations (Scopus)
88 Downloads (Pure)

Emergence of condensation in Kingman's model of selection and mutation

Dereich, S. & Morters, P., Oct 2013, In : Acta Applicandae Mathematicae. 127, 1, p. 17-26 10 p.

Research output: Contribution to journalArticle

Open Access
File
Condensation
Mutation
Scaling Limit
Gamma distribution
Limit Theorems
4 Citations (Scopus)

Error bounds in the gap metric for dissipative balanced approximations

Guiver, C. & Opmeer, M. R., 15 Dec 2013, In : Linear Algebra and its Applications. 439, 12, p. 3659–3698

Research output: Contribution to journalArticle

Gap Metric
Balanced Truncation
Error Bounds
Approximation
Decomposition
6 Citations (Scopus)

Estimation of basic reproduction numbers: Individual heterogeneity and robustness to perturbation of the contact function

Farrington, C. P., Unkel, S. & Anaya-Izquierdo, K., Jul 2013, In : Biostatistics . 14, 3, p. 528-40 13 p.

Research output: Contribution to journalArticle

Basic Reproduction number
Frailty
Infection
Contact
Robustness
6 Citations (Scopus)
95 Downloads (Pure)

Evaluating the Cost of Enforcement by Agent-Based Simulation: A Wireless Mobile Grid Example

Balke, T., De Vos, M. & Padget, J., 2013, PRIMA 2013: Principles and Practice of Multi-Agent Systems - 16th International Conference, Dunedin, New Zealand, December 1-6, 2013. Proceedings. Springer, Vol. 8291. p. 21-36 16 p. (Lecture Notes in Computer Science).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
5 Citations (Scopus)
97 Downloads (Pure)

Evidence for deep phylogenetic conservation of exonic splice-related constraints: Splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans

Wu, X., Tronholm, A., Fernandez Cáceres, E., Tovar-Corona, J. M., Chen, L., Urrutia, A. O. & Hurst, L. D., 2013, In : Genome biology and evolution. 5, 9, p. 1731-1745 15 p.

Research output: Contribution to journalArticle

Open Access
File
Phaeophyta
Phaeophyceae
brown alga
codons
Codon
24 Citations (Scopus)
genomic imprinting
gene expression
genes
alleles
loci
33 Citations (Scopus)
104 Downloads (Pure)

Finite volume and pseudo-spectral schemes for the fully nonlinear 1D Serre equations

Dutykh, D., Clamond, D., Milewski, P. & Mitsotakis, D., Oct 2013, In : European Journal of Applied Mathematics. 24, 5, p. 761-787 27 p.

Research output: Contribution to journalArticle

Open Access
File
Generalized Variational Principle
Pseudospectral Method
Finite Volume Scheme
Fully Nonlinear
Water waves
48 Citations (Scopus)
95 Downloads (Pure)

Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

Sansom, R. S. & Wills, M. A., 29 Aug 2013, In : Scientific Reports. 3, 2545.

Research output: Contribution to journalArticle

Open Access
File
fossilization
fossil
phylogenetics
geological time
fossil record
12 Citations (Scopus)

Functional nasal morphology of chimaerid fishes.

Kelsh, R., Sep 2013, In : Journal of Morphology. 274, 9, p. 987-1009 12 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)
X Chromosome Inactivation
inactivation
X-Linked Genes
gene
Genes
117 Citations (Scopus)

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

Sheppard, S. K., Didelot, X., Meric, G., Torralbo, A., Jolley, K. A., Kelly, D. J., Bentley, S. D., Maiden, M. C. J., Parkhill, J. & Falush, D., 16 Jul 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 29, p. 11923-11927 5 p.

Research output: Contribution to journalArticle

Pantothenic Acid
Campylobacter
Genome-Wide Association Study
Host Specificity
Chickens
115 Citations (Scopus)
104 Downloads (Pure)

Genomic imprinting and parent-of-origin effects on complex traits

Lawson, H. A., Cheverud, J. M. & Wolf, J. B., Sep 2013, In : Nature Reviews Genetics. 14, 9, p. 609-617 9 p.

Research output: Contribution to journalArticle

Open Access
File
Genomic Imprinting
Molecular Evolution
Fathers
Alleles
Mothers
1 Citation (Scopus)
26 Downloads (Pure)

Governing intelligent virtual agent behaviour with norms

Lee, J., Li, T., De Vos, M. & Padget, J. A., 2013, International conference on Autonomous Agents and Multi-Agent Systems, AAMAS '13, Saint Paul, MN, USA, May 6-10, 2013. Gini, M. L., Shehory, O., Ito, T. & Jonker, C. M. (eds.). The International Foundation for Autonomous Agents and Multiagent Systems, p. 1205-1206 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
3 Citations (Scopus)
89 Downloads (Pure)

Handling change in normative specifications

Athakravi, D., Corapi, D., Russo, A., De Vos, M., Padget, J. & Satoh, K., 2013, Declarative Agent Languages and Technologies X : 10th International Workshop, DALT 2012, Valencia, Spain, June 4, 2012, Revised Selected Papers. Baldoni, M., Dennis, L., Mascardi, V. & Vasconcelos, W. (eds.). Berlin: Springer, Vol. 7784 LNAI. p. 1-19 20 p. (Lecture Notes in Computer Science ; vol. 7784).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
Specifications
Inductive logic programming (ILP)
Open systems
Demonstrations
21 Citations (Scopus)

Harvesting, census timing and "hidden" hydra effects

Hilker, F. & Liz, E., Jun 2013, In : Ecological Complexity. 14, p. 95-107 13 p.

Research output: Contribution to journalArticle

Hydra
census
population size
pests
pest species
27 Citations (Scopus)
105 Downloads (Pure)

Homo homini lupus? Explaining antisocial punishment

Sylwester, K., Herrmann, B. & Bryson, J., Sep 2013, In : Journal of Neuroscience, Psychology, and Economics. 6, 3, p. 167-188 22 p.

Research output: Contribution to journalArticle

Open Access
File
Punishment
Hominidae
Behavioral Economics
Behavioral Sciences
Social Psychology

How, if, and why species form

G. Rossberg, A., Rogers, T. C. & McKane, A. J., 1 Nov 2013, In : Scientist . 27, 11, 38010.

Research output: Contribution to journalEditorial

9 Citations (Scopus)
96 Downloads (Pure)

I-ABM: combining institutional frameworks and agent-based modelling for the design of enforcement policies

Balke, T., De Vos, M. & Padget, J., Nov 2013, In : Artificial Intelligence and Law. 21, 4, p. 371-398 28 p.

Research output: Contribution to journalArticle

Open Access
File
job creation measure
Large scale systems
Decision making
Specifications
decision making
17 Citations (Scopus)
95 Downloads (Pure)

Identification of Regions Important for Resistance and Signalling within the Antimicrobial Peptide Transporter BceAB of Bacillus subtilis

Kallenberg, F., Dintner, S., Schmitz, R. & Gebhard, S., 15 Jul 2013, In : Journal of Bacteriology. 195, 14, p. 3287-3297

Research output: Contribution to journalArticle

File
Bacillus subtilis
Bacitracin
Peptides
Mutation
ATP-Binding Cassette Transporters
22 Citations (Scopus)

Immune anticipation of mating in Drosophila: Turandot M promotes immunity against sexually transmitted fungal infections

Zhong, W., Mcclure, C., Evans, C., Mlynski, D., Immonen, E., Ritchie, M. & Priest, N. K., 22 Dec 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1773, 9 p., 20132018.

Research output: Contribution to journalArticle

Mycoses
Sexually Transmitted Diseases
immunity
Drosophila
Immunity
18 Citations (Scopus)

Initiators, leaders, and recruitment mechanisms in the collective movements of damselfish

Ward, A. J. W., Herbert-Read, J. E., Jordan, L. A., James, R., Krause, J., Ma, Q., Rubenstein, D. I., Sumpter, D. J. T. & Morrell, L. J., Jun 2013, In : American Naturalist. 181, 6, p. 748-760 13 p.

Research output: Contribution to journalArticle

group behavior
Pomacentridae
leadership
fish

Inspiration, collaboration, and cooperation in the PCMR community

Bosenberg, M., Kelsh, R. & Arnheiter, H., 1 Nov 2013, In : Pigment Cell and Melanoma Research. 26, 6, p. 785 1 p.

Research output: Contribution to journalEditorial