Research Output 1977 2019

2013
5 Citations (Scopus)

Evidence for deep phylogenetic conservation of exonic splice-related constraints: Splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans

Wu, X., Tronholm, A., Fernandez Cáceres, E., Tovar-Corona, J. M., Chen, L., Urrutia, A. O. & Hurst, L. D., 2013, In : Genome biology and evolution. 5, 9, p. 1731-1745 15 p.

Research output: Contribution to journalArticle

Open Access
File
Phaeophyta
Phaeophyceae
brown alga
codons
Codon
23 Citations (Scopus)
genomic imprinting
gene expression
genes
alleles
loci
32 Citations (Scopus)

Finite volume and pseudo-spectral schemes for the fully nonlinear 1D Serre equations

Dutykh, D., Clamond, D., Milewski, P. & Mitsotakis, D., Oct 2013, In : European Journal of Applied Mathematics. 24, 5, p. 761-787 27 p.

Research output: Contribution to journalArticle

Open Access
File
Generalized Variational Principle
Pseudospectral Method
Finite Volume Scheme
Fully Nonlinear
Water waves
44 Citations (Scopus)

Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

Sansom, R. S. & Wills, M. A., 29 Aug 2013, In : Scientific Reports. 3, 2545.

Research output: Contribution to journalArticle

Open Access
File
fossilization
fossil
phylogenetics
geological time
fossil record
12 Citations (Scopus)

Functional nasal morphology of chimaerid fishes.

Kelsh, R., Sep 2013, In : Journal of Morphology. 274, 9, p. 987-1009 12 p.

Research output: Contribution to journalArticle

49 Citations (Scopus)
X Chromosome Inactivation
inactivation
X-Linked Genes
gene
Genes
109 Citations (Scopus)

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

Sheppard, S. K., Didelot, X., Meric, G., Torralbo, A., Jolley, K. A., Kelly, D. J., Bentley, S. D., Maiden, M. C. J., Parkhill, J. & Falush, D., 16 Jul 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 29, p. 11923-11927 5 p.

Research output: Contribution to journalArticle

Pantothenic Acid
Campylobacter
Genome-Wide Association Study
Host Specificity
Chickens
108 Citations (Scopus)

Genomic imprinting and parent-of-origin effects on complex traits

Lawson, H. A., Cheverud, J. M. & Wolf, J. B., Sep 2013, In : Nature Reviews Genetics. 14, 9, p. 609-617 9 p.

Research output: Contribution to journalArticle

Open Access
File
Genomic Imprinting
Molecular Evolution
Fathers
Alleles
Mothers
1 Citation (Scopus)

Governing intelligent virtual agent behaviour with norms

Lee, J., Li, T., De Vos, M. & Padget, J. A., 2013, International conference on Autonomous Agents and Multi-Agent Systems, AAMAS '13, Saint Paul, MN, USA, May 6-10, 2013. Gini, M. L., Shehory, O., Ito, T. & Jonker, C. M. (eds.). The International Foundation for Autonomous Agents and Multiagent Systems, p. 1205-1206 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
2 Citations (Scopus)

Handling change in normative specifications

Athakravi, D., Corapi, D., Russo, A., De Vos, M., Padget, J. & Satoh, K., 2013, Declarative Agent Languages and Technologies X : 10th International Workshop, DALT 2012, Valencia, Spain, June 4, 2012, Revised Selected Papers. Baldoni, M., Dennis, L., Mascardi, V. & Vasconcelos, W. (eds.). Berlin: Springer, Vol. 7784 LNAI. p. 1-19 20 p. (Lecture Notes in Computer Science ; vol. 7784).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
Specifications
Inductive logic programming (ILP)
Open systems
Demonstrations
18 Citations (Scopus)

Harvesting, census timing and "hidden" hydra effects

Hilker, F. & Liz, E., Jun 2013, In : Ecological Complexity. 14, p. 95-107 13 p.

Research output: Contribution to journalArticle

Hydra
census
population size
pests
pest species
26 Citations (Scopus)

Homo homini lupus? Explaining antisocial punishment

Sylwester, K., Herrmann, B. & Bryson, J., Sep 2013, In : Journal of Neuroscience, Psychology, and Economics. 6, 3, p. 167-188 22 p.

Research output: Contribution to journalArticle

Open Access
File
Punishment
Hominidae
Behavioral Economics
Behavioral Sciences
Social Psychology

How, if, and why species form

G. Rossberg, A., Rogers, T. C. & McKane, A. J., 1 Nov 2013, In : Scientist . 27, 11, 38010.

Research output: Contribution to journalEditorial

9 Citations (Scopus)

I-ABM: combining institutional frameworks and agent-based modelling for the design of enforcement policies

Balke, T., De Vos, M. & Padget, J., Nov 2013, In : Artificial Intelligence and Law. 21, 4, p. 371-398 28 p.

Research output: Contribution to journalArticle

Open Access
File
job creation measure
Large scale systems
Decision making
Specifications
decision making
17 Citations (Scopus)

Identification of Regions Important for Resistance and Signalling within the Antimicrobial Peptide Transporter BceAB of Bacillus subtilis

Kallenberg, F., Dintner, S., Schmitz, R. & Gebhard, S., 15 Jul 2013, In : Journal of Bacteriology. 195, 14, p. 3287-3297

Research output: Contribution to journalArticle

File
Bacillus subtilis
Bacitracin
Peptides
Mutation
ATP-Binding Cassette Transporters
19 Citations (Scopus)

Immune anticipation of mating in Drosophila: Turandot M promotes immunity against sexually transmitted fungal infections

Zhong, W., Mcclure, C., Evans, C., Mlynski, D., Immonen, E., Ritchie, M. & Priest, N. K., 22 Dec 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1773, 9 p., 20132018.

Research output: Contribution to journalArticle

Mycoses
Sexually Transmitted Diseases
immunity
Drosophila
Immunity
18 Citations (Scopus)

Initiators, leaders, and recruitment mechanisms in the collective movements of damselfish

Ward, A. J. W., Herbert-Read, J. E., Jordan, L. A., James, R., Krause, J., Ma, Q., Rubenstein, D. I., Sumpter, D. J. T. & Morrell, L. J., Jun 2013, In : American Naturalist. 181, 6, p. 748-760 13 p.

Research output: Contribution to journalArticle

group behavior
Pomacentridae
leadership
fish

Inspiration, collaboration, and cooperation in the PCMR community

Bosenberg, M., Kelsh, R. & Arnheiter, H., 1 Nov 2013, In : Pigment Cell and Melanoma Research. 26, 6, p. 785 1 p.

Research output: Contribution to journalEditorial

19 Citations (Scopus)

Iontophoresis-targeted, follicular delivery of minoxidil sulfate for the treatment of alopecia

Gelfuso, G. M., Gratieri, T., Delgado-Charro, M. B., Guy, R. H. & Vianna Lopez, R. F., 1 May 2013, In : Journal of Pharmaceutical Sciences. 102, 5, p. 1488-1494

Research output: Contribution to journalArticle

Iontophoresis
Alopecia
Minoxidil
Sulfates
Hair Follicle
24 Citations (Scopus)

Learning a real time grasping strategy

Huang, B., El-Khoury, S., Li, M., Bryson, J. J. & Billard, A., 1 May 2013, IEEE International Conference on Robotics and Automation (ICRA) 2013. p. 593-600

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robots
End effectors
Human robot interaction
Probability distributions
Statistical methods
1 Citation (Scopus)

Learning motion primitives of object manipulation using Mimesis Model

Huang, B., Bryson, J. J. & Inamura, T., 2013, 2013 IEEE International Conference on Robotics and Biomimetics (ROBIO). IEEE, p. 1144-1150 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
Hidden Markov models
Interpolation
Demonstrations
Robots
Statistical Models
2 Citations (Scopus)

Legal conflict detection in interacting legal systems

Li, T., Balke, T., De Vos, M., Padget, J. & Satoh, K., 1 Jan 2013, Frontiers in Artificial Intelligence and Applications. Amsterdam, The Netherlands: IOS Press, p. 107-116 10 p. (Legal Knowledge and Information Systems; vol. 259).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Specifications
Industry
5 Citations (Scopus)

Live imaging, identifying and tracking single cells in complex populations in vivo and ex vivo

Kang, M., Xenopoulos, P., Munoz-Descalzo, S., Lou, X. & Hadjantonakis, A-K., 2013, Imaging and Tracking Stem Cells: Methods and Protocols. Turksen, K. (ed.). Humana Press, p. 109-123 (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

20 Citations (Scopus)

Local environment but not genetic differentiation influences biparental care in ten plover populations

Vincze, O., Székely, T., Küpper, C., AlRashidi, M., Amat, J. A., Argüelles Ticó, A., Burgas, D., Burke, T., Cavitt, J., Figuerola, J., Shobrak, M., Montalvo, T. & Kosztolányi, A., 17 Apr 2013, In : PLoS ONE. 8, 4, e60998.

Research output: Contribution to journalArticle

Open Access
File
genetic variation
Social Behavior
social behavior
Charadrius alexandrinus
Population

Measuring cultural relativity of emotional valence and arousal using semantic clustering and Twitter

Bann, E. Y. & Bryson, J. J., 1 Aug 2013, COGSCI 2013. Cognitive Science Society, p. 1809-1814 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
twitter
emotion
semantics
facial expression
present

Method for non-invasively determining the relative levels of two biological substances. T3

Delgado-Charro, M. & Guy, R., 4 Feb 2013, Patent No. ES2394691T, Priority date 22 Jun 2001, Priority No. EP01114750

Research output: Patent

Modelling legitimate expectations

De Vos, M., Balke, T. & Satoh, K., 2013, New Frontiers in Artificial Intelligence: JSAI-isAI 2012 Workshops, LENLS, JURISIN, MiMI, Miyazaki, Japan, November 30 and December 1, 2012, Revised Selected Papers. Motomura, Y., Butler, A. & Bekki, D. (eds.). Berlin: Springer, p. 141-156 17 p. (Lecture Notes in Computer Science; vol. 7856).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
private law
formalization
popularity
faith
Law

Modelling normative awareness: First considerations

Rauwolf, P., Balke, T. & De Vos, M., 2013, p. 65-71. 7 p.

Research output: Contribution to conferencePaper

File
Social Sciences
Interpersonal Relations
Systems Analysis
Software
Pressure
45 Citations (Scopus)

Modelling the use of Wolbachia to control dengue fever transmission

Hughes, H. & Britton, N. F., 1 May 2013, In : Bulletin of Mathematical Biology. 75, 5, p. 796-818 23 p.

Research output: Contribution to journalArticle

Open Access
File
dengue fever
Wolbachia
dengue
Dengue
mosquito
23 Citations (Scopus)

Monge–Ampére based moving mesh methods for numerical weather prediction, with applications to the Eady problem

Budd, C. J., Cullen, M. J. P. & Walsh, E. J., 1 Mar 2013, In : Journal of Computational Physics. 236, p. 247-270 34 p.

Research output: Contribution to journalArticle

Coriolis force
Meteorology
Incompressible flow
weather
mesh
5 Citations (Scopus)

Monte Carlo simulation and free energies of mixed oxide nanoparticles

Purton, J. A., Parker, S. C. & Allan, N. L., 7 May 2013, In : Physical Chemistry Chemical Physics. 15, 17, p. 6219-6225 7 p.

Research output: Contribution to journalArticle

mixed oxides
Oxides
Free energy
free energy
Nanoparticles
50 Citations (Scopus)

Mutations in C10orf11, a melanocyte-differentiation gene, cause autosomal-recessive albinism

Gronskov, K., Dooley, C. M., Ostergaard, E., Kelsh, R. N., Hansen, L., Levesque, M. P., Vilhelmsen, K., Mollgard, K., Stemple, D. & Rosenberg, T., 7 Mar 2013, In : American Journal of Human Genetics. 92, 3, p. 415-421 7 p.

Research output: Contribution to journalArticle

Albinism
Melanocytes
Mutation
Nonsense Codon
Genes
Albinism
Portugal
Melanocytes
Pigments
Melanoma

Natural action selection, modeling

Seth, A. K. & Bryson, J. J., 2013, Encyclopedia of the mind. Pashler, H. (ed.). Thousand Oaks, CA: Sage Publications

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

5 Citations (Scopus)

Network dynamics contribute to structure: Nestedness in mutualistic networks

McQuaid, C. F. & Britton, N. F., 1 Dec 2013, In : Bulletin of Mathematical Biology. 75, 12, p. 2372-2388 17 p.

Research output: Contribution to journalArticle

nestedness
Network Dynamics
Population dynamics
Parasites
Population Dynamics

Neural crest: origin, migration and differentiation

Kelsh, R. N. & Erickson, C. A., 2013, In : eLS.

Research output: Contribution to journalArticle

Neural Crest
Neural Tube
Cues
Transcription Factors
Intrinsic Factor
5 Citations (Scopus)

No overall benefit of predator exclosure cages for the endangered St. Helena Plover Charadrius sanctaehelenae

Burns, F., McCulloch, N., Szekely, T. & Bolton, M., Apr 2013, In : Ibis. 155, 2, p. 397-401 5 p.

Research output: Contribution to journalArticle

Charadrius
cages
predator
predators
cats
5 Citations (Scopus)

Open questions: A logic (or lack thereof) of genome organization

Hurst, L. D., 28 May 2013, In : BMC Biology. 11, 58.

Research output: Contribution to journalArticle

46 Citations (Scopus)

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli

Méric, G., Kemsley, E. K., Falush, D., Saggers, E. J. & Lucchini, S., Feb 2013, In : Environmental Microbiology. 15, 2, p. 487-501 15 p.

Research output: Contribution to journalArticle

colonization
Escherichia coli
phylogenetics
phenotype
phylogeny
122 Citations (Scopus)

Positively charged residues are the major determinants of ribosomal velocity

Charneski, C. A. & Hurst, L. D., 12 Mar 2013, In : PLoS Biology. 11, 3, e1001508.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Predator-prey oscillations can shift when diseases become endemic

Bate, A. & Hilker, F., 7 Jan 2013, In : Journal of Theoretical Biology. 316, p. 1-8

Research output: Contribution to journalArticle

Endemic Diseases
Predator-prey
oscillation
Basic Reproductive number
Oscillation
63 Citations (Scopus)

Progressive genome-wide introgression in agricultural Campylobacter coli

Sheppard, S. K., Didelot, X., Jolley, K. A., Darling, A. E., Pascoe, B., Meric, G., Kelly, D. J., Cody, A., Colles, F. M., Strachan, N. J. C., Ogden, I. D., Forbes, K., French, N. P., Carter, P., Miller, W. G., McCarthy, N. D., Owen, R., Litrup, E., Egholm, M., Affourtit, J. P. & 4 othersBentley, S. D., Parkhill, J., Maiden, M. C. J. & Falush, D., Feb 2013, In : Molecular Ecology. 22, 4, p. 1051-1064 14 p.

Research output: Contribution to journalArticle

Open Access
Campylobacter coli
introgression
genome
Genome
DNA
20 Citations (Scopus)

Random networks with sublinear preferential attachment: the giant component

Dereich, S. & Morters, P., Jan 2013, In : Annals of Probability. 41, 1, p. 329-384 56 p.

Research output: Contribution to journalArticle

File
Giant Component
Preferential Attachment
Random Networks
Branching Random Walk
Survival Distribution

Refining reintroduction release methods: modelling post-release survival of captive-reared Great Bustards

Burnside, R. J., Dawes, A., Ashbrook, K., Waters, D., Carter, I., Lock, L. & Szekely, T., 2013, (Accepted/In press) In : Ibis.

Research output: Contribution to journalArticle

refining
reintroduction
modeling
methodology
method
8 Citations (Scopus)

Resolution of sharp fronts in the presence of model error in variational data assimilation

Freitag, M. A., Nichols, N. K. & Budd, C. J., Apr 2013, In : Quarterly Journal of the Royal Meteorological Society. 139, 672, p. 742-757 16 p.

Research output: Contribution to journalArticle

data assimilation
inverse problem
matrix
norm
method
2 Citations (Scopus)

Resources allocations in healthcare for cancer: A case study using generalised additive mixed models

Musio, M., Sauleau, E-A. & Augustin, N., 2013, In : Geospatial Health. 7, 1, p. 83-89 7 p.

Research output: Contribution to journalArticle

Resource Allocation
resource allocation
health care
cancer
Delivery of Health Care
2 Citations (Scopus)

Richard Guy and his collaborators: 'crackling' the skin code

Delgado-Charro, M. B., Jul 2013, In : Skin Pharmacology and Physiology. 26, 4-6, p. 302-312

Research output: Contribution to journalSpecial issue

3 Citations (Scopus)

Sex differences in incubation behaviour but not mortality risk in a threatened shorebird

Burns, F., Mcculloch, N., Dos Remedios, N., Bolton, M. & Szekely, T., Oct 2013, In : Ibis. 155, 4, p. 877-880 4 p.

Research output: Contribution to journalArticle

mortality risk
wader
gender differences
incubation
gender

Sex-specific habitat use by Great Bustards in the UK

Ashbrook, K., Burnside, R. J., Waters, D., Carter, I., Evans, A., Green, R. & Szekely, T., 2013, (Accepted/In press) In : Animal Conservation.

Research output: Contribution to journalArticle

36 Citations (Scopus)

Sexual networks: Measuring sexual selection in structured, polyandrous populations

McDonald, G. C., James, R., Krause, J. & Pizzari, T., 5 Mar 2013, In : Philosophical Transactions of the Royal Society B - Biological Sciences. 368, 1613

Research output: Contribution to journalArticle

sexual selection
polyandry
Population
social networks
network analysis