Research Output 1977 2019

Article
9 Citations (Scopus)

A sampled-data servomechanism for stable well-posed systems

Ke, Z., Logemann, H. & Rebarber, R., 2009, In : IEEE Transactions on Automatic Control. 54, 5, p. 1123-1128 6 p.

Research output: Contribution to journalArticle

File
Disturbance rejection
Servomechanisms
Controllers
36 Citations (Scopus)

A search for quantitative trait loci exhibiting imprinting effects on mouse mandible size and shape

Leamy, L. J., Klingenberg, C. P., Sherratt, E., Wolf, J. B. & Cheverud, J. M., Aug 2008, In : Heredity. 101, 6, p. 518-526 9 p.

Research output: Contribution to journalArticle

Genomic Imprinting
Quantitative Trait Loci
Mandible
Heterozygote
Alleles
27 Citations (Scopus)

A Sensory Complex Consisting of an ATP-Binding-Cassette Transporter and a Two-Component Regulatory System Controls Bacitracin Resistance in Bacillus subtilis

Dintner, S., Heermann, R., Fang, C., Jung, K. & Gebhard, S., 3 Oct 2014, In : Journal of Biological Chemistry. 289, p. 27899 - 27910 12 p.

Research output: Contribution to journalArticle

Open Access
File
Bacitracin
ATP-Binding Cassette Transporters
Bacilli
Bacillus subtilis
Signal transduction
7 Citations (Scopus)

A simple, highly visual in vivo screen for anaplastic lymphoma kinase inhibitors

Rodrigues, F. S. L. M., Yang, X., Nikaido, M., Liu, Q. & Kelsh, R. N., 21 Dec 2012, In : ACS Chemical Biology. 7, 12, p. 1968-1974 7 p.

Research output: Contribution to journalArticle

Open Access
File
Assays
Zebrafish
anaplastic lymphoma kinase
Automation
Neuroblastoma
22 Citations (Scopus)

A simple mechanism for complex social behavior

Parkinson, K., Buttery, N. J., Wolf, J. B. & Thompson, C. R. L., 29 Mar 2011, In : PLoS Biology. 9, 3, 15 p., e1001039.

Research output: Contribution to journalArticle

Social Behavior
social behavior
Dictyostelium discoideum
Dictyostelium
Amoeba
11 Citations (Scopus)

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

Hurst, L. D., Sachenkova, O., Daub, C., Forrest, A. R. R. & Huminiecki, L., 31 Jul 2014, In : Genome Biology. 15, 7, 413.

Research output: Contribution to journalArticle

Open Access
Transcription Factors
transcription factors
divergence
promoter regions
Activating Transcription Factors
15 Citations (Scopus)

A simple model for biological aggregation with asymmetric sensing

Milewski, P. A. & Yang, X., Jun 2008, In : Communications in Mathematical Sciences. 6, 2, p. 397-416 20 p.

Research output: Contribution to journalArticle

File

A singular dispersion relation arising in a caricature of a model for morphogenesis

Britton, N. F., 1988, In : Journal of Mathematical Biology. 26, 4, p. 387-403 17 p.

Research output: Contribution to journalArticle

Caricatures
Morphogenesis
Dispersion Relation
morphogenesis
Unstable
9 Citations (Scopus)

A spatially stochastic epidemic model with partial immunization shows in mean field approximation the reinfection threshold

Stollenwerk, N., van Noort, S., Martins, J., Aguiar, M., Hilker, F., Pinto, A. & Gomes, G., 2010, In : Journal of Biological Dynamics. 4, 6, p. 634-649 16 p.

Research output: Contribution to journalArticle

immunization
physics
immunity
Biological Sciences
26 Citations (Scopus)

A spine approach to branching diffusions with applications to L-p-convergence of martingales

Hardy, R. & Harris, S. C., Jun 2009, In : Séminaire de Probabilités XLII. 1979, p. 281-330 50 p.

Research output: Contribution to journalArticle

Open Access
File
Spine
Martingale
Branching
Branching Brownian Motion
Many to one
12 Citations (Scopus)

Assessing node risk and vulnerability in epidemics on networks

Rogers, T., Jan 2015, In : EPL (Europhysics Letters). 109, 2, p. 28005

Research output: Contribution to journalArticle

Open Access
File
vulnerability
infectious diseases
life (durability)
cavities
approximation
9 Citations (Scopus)

Assessment of iontophoretic and passive ungual penetration by laser scanning confocal microscopy

Dutet, J. & Delgado-Charro, M. B., Dec 2012, In : Pharmaceutical Research. 29, 12, p. 3464-3474

Research output: Contribution to journalArticle

Open Access
File
Nails
Confocal microscopy
Confocal Microscopy
Scanning
Lasers
65 Citations (Scopus)

Association patterns and shoal fidelity in the three-spined stickleback

Ward, A. J., Botham, M. S., Hoare, D. J., James, R., Broom, M., Godin, J-G. J. & Krause, J., 2002, In : Proceedings of the Royal Society B: Biological Sciences. 269, 1508, p. 2451-2455 5 p.

Research output: Contribution to journalArticle

Smegmamorpha
Gasterosteidae
Fish
Fishes
tit-for-tat
6 Citations (Scopus)

A stability result for solitary waves in nonlinear dispersive equations

Akers, B. & Milewski, P. A., Sep 2008, In : Communications in Mathematical Sciences. 6, 3, p. 791-797 7 p.

Research output: Contribution to journalArticle

File
Nonlinear Dispersive Equations
Solitary Waves
Solitons
Traveling Wave
Surface Waves
4 Citations (Scopus)

A strong law of large numbers for branching processes: almost sure spine events

Harris, S. C. & Roberts, M. I., 8 May 2014, In : Electronic Communications in Probability. 19, p. 1-6 6 p., 28.

Research output: Contribution to journalArticle

Open Access
File
Strong law of large numbers
Spine
Branching process
Almost Sure Convergence
Manipulation
3 Citations (Scopus)

A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle

Awasthi Mishra, N., Droegemueller, C., Jagannathan, V., Keller, I., Wuthrich, D., Bruggmann, R., Beck, J., Schuetz, E., Brenig, B., Demmel, S., Moser, S., Signer-Hasler, H., Pienkowska-Schelling, A., Schelling, C., Sande, M., Rongen, R., Rieder, S., Kelsh, R. N., Mercader, N. & Leeb, T., 28 Jun 2017, In : PLoS ONE. 12, 6, 16 p., e0180170.

Research output: Contribution to journalArticle

Open Access
melanocytes
5' Flanking Region
Melanocytes
Genes
neural crest
6 Citations (Scopus)

Asymptotical computations for a model of flow in saturated porous media

Amodio, P., Budd, C. J., Koch, O., Settanni, G. & Weinmüller, E., 15 Jun 2014, In : Applied Mathematics and Computation. 237, p. 155-167 13 p.

Research output: Contribution to journalArticle

Open Access
File
Porous Media
Porous materials
Initial value problems
Second-order Ordinary Differential Equations
Finite difference method
12 Citations (Scopus)

A systematic survey of expression and function of zebrafish frizzled genes

Nikaido, M., Law, E. W. P. & Kelsh, R. N., 29 Jan 2013, In : PLoS ONE. 8, 1, 54833.

Research output: Contribution to journalArticle

Neural Crest
Melanocytes
Zebrafish
Danio rerio
neural crest

A systems biology approach to in vivo dissection of the gene regulatory network (GRN) underlying melanocyte differentiation in zebrafish

Vibert, L., Nikkaido, M., Greenhill, E. R. & Kelsh, R. N., 2011, In : Pigment Cell & Melanoma Research. 24, 4, p. 820

Research output: Contribution to journalArticle

A systems biology approach uncovers the core gene regulatory network governing iridophore fate choice from the neural crest.

Petratou, K., Subkhankulova, T., Lister, J., Schwetlick, H. & Kelsh, R. N., 4 Oct 2018, In : Plos Genetics. 14, 10, 32 p., e1007402.

Research output: Contribution to journalArticle

Open Access
44 Citations (Scopus)

A temperature compensation method for CDOM fluorescence sensors in freshwater

Watras, C. J., Hanson, P. C., Stacy, T. L., Morrison, K. M., Mather, J., Hu, Y. H. & Milewski, P., 28 Oct 2011, In : Limnology and Oceanography: Methods. 9, JULY, p. 296-301 6 p.

Research output: Contribution to journalArticle

Fluorescence
Sensors
Temperature
Water
Compensation and Redress
1 Citation (Scopus)

A temperature compensation method for chlorophyll and phycocyanin fluorescence sensors in freshwater

Watras, C. J., Morrison, K. A., Rubsam, J. L., Hanson, P. C., Watras, A. J., Laliberte, G. D. & Milewski, P., Jul 2017, In : Limnology and Oceanography: Methods. 15, 7, p. 642-652

Research output: Contribution to journalArticle

Chlorophyll
Fluorescence
Sensors
Temperature
Compensation and Redress
11 Citations (Scopus)

A test of the null model for 5 ' UTR evolution based on GC content

Reuter, M., Engelstadter, J., Fontanillas, P. & Hurst, L. D., 2008, In : Molecular Biology and Evolution. 25, 5, p. 801-804 4 p.

Research output: Contribution to journalArticle

Untranslated Regions
5' Untranslated Regions
5' untranslated regions
Base Composition
Stochastic Processes
23 Citations (Scopus)

A two cities theorem for the parabolic Anderson model

Konig, W., Lacoin, H., Morters, P. & Sidorova, N., Jan 2009, In : Annals of Probability. 37, 1, p. 347-392 46 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Atypical AT skew in firmicute genomes results from selection and not from mutation

Charneski, C. A., Honti, F., Bryant, J. M., Hurst, L. D. & Feil, E. J., 15 Sep 2011, In : Plos Genetics. 7, 9, 14 p., e1002283.

Research output: Contribution to journalArticle

mutation
genome
Genome
Mutation
codons
16 Citations (Scopus)

A unified framework for Schelling's model of segregation

Rogers, T. & McKane, A. J., Jul 2011, In : Journal of Statistical Mechanics-Theory and Experiment. 2011, July, 21 p., P07006.

Research output: Contribution to journalArticle

Segregation
Model
Social Simulation
Framework
methodology
1 Citation (Scopus)

Automated multi-level governance compliance checking

King, T. C., De Vos, M., Dignum, V., Jonker, C. M., Li, T., Padget, J. & van Riemsdijk, M. B., 30 Nov 2017, In : Autonomous Agents and Multi-Agent Systems. 31, 6, p. 1283-1343 61 p.

Research output: Contribution to journalArticle

Open Access
File
Compliance
Concretes
Semantics
Acoustic waves
16 Citations (Scopus)

Automatic music composition using answer set programming

Boenn, G., Brain, M., De Vos, M. & Ffitch, J., Mar 2011, In : Theory and Practice of Logic Programming. 11, 2-3, p. 397-427 31 p.

Research output: Contribution to journalArticle

File
Answer Set Programming
Music
Chemical analysis
Harmonic
Computer music
31 Citations (Scopus)

A zebrafish model for Waardenburg syndrome type IV reveals diverse roles for Sox10 in the otic vesicle

Dutton, K., Abbas, L., Spencer, J., Brannon, C., Mowbray, C., Nikaido, M., Kelsh, R. N. & Whitfield, T. T., Jan 2009, In : Disease Models & Mechanisms. 2, 1-2, p. 68-83 16 p.

Research output: Contribution to journalArticle

Waardenburg Syndrome
Zebrafish
Ear
Genes
HMGB Proteins

A zebrafish view of progressive fate restriction in neural crest development

Kelsh, R. N., Yang, X., Lopes, S. S. & Nikaido, M., Feb 2009, In : Neurogastroenterology & Motility. 21, 2, p. VIII-VIII

Research output: Contribution to journalArticle

7 Citations (Scopus)

Bacillus subtilis as a Platform for Molecular Characterisation of Regulatory Mechanisms of Enterococcus faecalis Resistance against Cell Wall Antibiotics

Fang, C., Stiegeler, E., Cook, G. M., Mascher, T. & Gebhard, S., 27 Mar 2014, In : PLoS ONE. 9, 3, p. e93169

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. & Honkela, A., 1 Aug 2016, In : Microbial Genomics. 2, 8, p. e000075 9 p.

Research output: Contribution to journalArticle

Open Access
File
Cross Infection
DNA Sequence Analysis
Virulence
Software
Bacteria

Behaviour of lambs (Ovis aries) in relation to spatial patterns of defecation on a pasture

White, K. & Hall, S. JG., 1998, In : Journal of Zoology. p. 111-117

Research output: Contribution to journalArticle

defecation
feces
pasture
lambs
pastures
189 Citations (Scopus)

Bifurcations in Nonsmooth Dynamical Systems

di Bernardo, M., Budd, C. J., Champneys, A. R., Kowalczyk, P., Nordmark, A. B., Tost, G. O. & Piiroinen, P. T., 2008, In : Siam Review. 50, 4, p. 629-701 73 p.

Research output: Contribution to journalArticle

Bifurcation (mathematics)
Dynamical systems
Jump
Bifurcation
Dynamical system
7 Citations (Scopus)

Bioequivalence methodologies for topical drug products: in vitro and ex vivo studies with a cortiscosteroid and an anti-fungal drug

Bastos Leal, L., Cordery, S. F., Delgado-Charro, M. B., Bunge, A. L. & Guy, R. H., Apr 2017, In : Pharmaceutical Research. 34, 4, p. 730-737 8 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Biparentally deserted offspring are viable in a species with intense sexual conflict over care

Pogány, Á., Kosztolányi, A., Miklósi, Á., Komdeur, J. & Székely, T., 1 Jul 2015, In : Behavioural Processes. 116, p. 28-32 5 p.

Research output: Contribution to journalArticle

Eggs
Birds
viability
nests
Embryonic Development
18 Citations (Scopus)

Birt Hogg-Dube Syndrome-Associated FLCN Mutations Disrupt Protein Stability

Nahorski, M. S., Reiman, A., Lim, D. H. K., Nookala, R. K., Seabra, L., Lu, X. H., Fenton, J., Boora, U., Nordenskjold, M., Latif, F., Hurst, L. D. & Maher, E. R., Aug 2011, In : Human Mutation. 32, 8, p. 921-929 9 p.

Research output: Contribution to journalArticle

Birt-Hogg-Dube Syndrome
Estrone
Protein Stability
Sequence Deletion
Mutation
10 Citations (Scopus)

Both maintenance and avoidance of RNA-binding protein interactions constrain coding region evolution

Savisaar, R. & Hurst, L., 1 May 2017, In : Molecular Biology and Evolution. 34, 5, p. 1110-1126

Research output: Contribution to journalArticle

Open Access
File
RNA-binding proteins
RNA-Binding Proteins
RNA
Maintenance
protein
2 Citations (Scopus)
Open Access
File
Balanced Truncation
Infinite-dimensional Systems
Error Bounds
Singular Values
Gap Metric
6 Citations (Scopus)

Bounds on the dynamics of sink populations with noisy immigration

Eager, E. A., Guiver, C., Hodgson, D., Rebarber, R., Stott, I. & Townley, S., Mar 2014, In : Theoretical Population Biology. 92, p. 88-96 9 p.

Research output: Contribution to journalArticle

Open Access
File
immigration
Penstemon
Oncorhynchus tshawytscha
blowout
extinction
1 Citation (Scopus)

Branching Brownian motion: Almost sure growth along scaled paths

Harris, S. C. & Roberts, M. I., 2012, In : Séminaire de Probabilités. XLIV, p. 375-399

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Path
Spine
Large Deviations
4 Citations (Scopus)

Branching brownian motion in a strip: survival near criticality

Harris, S., Hesse, M. & Kyprianou, A., Jan 2016, In : Annals of Probability. 44, 1, p. 235-275 51 p.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Criticality
Strip
Spine
Backbone
1 Citation (Scopus)

Branching Brownian motion with absorption and the all-time minimum of branching Brownian motion with drift

Berestycki, J., Brunet, É., Harris, S. C. & Miłoś, P., 15 Sep 2017, In : Journal of Functional Analysis. 273, 6, p. 2107-2143 37 p.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Brownian Motion with Drift
Absorption
Real Line
Traveling Wave
7 Citations (Scopus)

Branching Brownian motion with an inhomogeneous breeding potential

Harris, J. W. & Harris, S. C., Aug 2009, In : Annales de l'Institut Henri Poincaré: Probabilités et Statistiques. 45, 3, p. 793-801 9 p.

Research output: Contribution to journalArticle

File
Branching Brownian Motion
Blow-up
Vertical
Change of Measure
Spine
4 Citations (Scopus)

Branching Brownian Motion with Catalytic Branching at the Origin

Bocharov, S. & Harris, S. C., Dec 2014, In : Acta Applicandae Mathematicae. 134, 1, p. 201-228 28 p.

Research output: Contribution to journalArticle

Open Access
File
Branching Brownian Motion
Brownian movement
Branching
Strong law of large numbers
Local Time

Branching random walk in an inhomogeneous breeding potential

Bocharov, S. & Harris, S. C., 30 Oct 2014, In : Séminaire de Probabilités. XLVI, p. 1-32 32 p.

Research output: Contribution to journalArticle

Branching Random Walk
Continuous Time Random Walk
Asymptotic Behavior
10 Citations (Scopus)

Breaking and merging of liquid sheets and filaments

Keller, J. B., Milewski, P. A. & Vanden-Broeck, J. -M., 1 Apr 2002, In : Journal of Engineering Mathematics. 42, 3-4, p. 283-290 8 p.

Research output: Contribution to journalArticle

Filament
Merging
Liquid
Liquids
Surface tension
2 Citations (Scopus)

Breathers in a pinned mechanical lattice

Green, S. C., Budd, C. J. & Hunt, G. W., 2011, In : SIAM Journal on Applied Dynamical Systems. 10, 1, p. 66-91 26 p.

Research output: Contribution to journalArticle

Breathers
Discrete Breathers
Pivot
Odd number
Mechanical Systems
5 Citations (Scopus)

Breeding distribution and conservation of the Crab Plover (Dromas ardeola) in Saudi Arabia (Aves: Charadriiformes)

Almalki, M., Alrashidi, M., Shobrak, M. & Székely, T., Feb 2014, In : Zoology in the Middle East. 60, 1, p. 6-12 6 p.

Research output: Contribution to journalArticle

Ardeola
Charadriiformes
Saudi Arabia
Aves
crabs
6 Citations (Scopus)

Breeding distribution and ecology of the threatened Madagascar Plover Charadrius thoracicus

Zefania, S., Ffrench-Constant, R., Long, P. R. & Szekely, T., 2008, In : Ostrich. 79, 1, p. 43-51 9 p.

Research output: Contribution to journalArticle

Charadrius
Madagascar
nest
breeding
nests