Research Output

2013

Evidence for deep phylogenetic conservation of exonic splice-related constraints: Splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans

Wu, X., Tronholm, A., Fernandez Cáceres, E., Tovar-Corona, J. M., Chen, L., Urrutia, A. O. & Hurst, L. D., 2013, In : Genome biology and evolution. 5, 9, p. 1731-1745 15 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
111 Downloads (Pure)
24 Citations (Scopus)

Finite volume and pseudo-spectral schemes for the fully nonlinear 1D Serre equations

Dutykh, D., Clamond, D., Milewski, P. & Mitsotakis, D., Oct 2013, In : European Journal of Applied Mathematics. 24, 5, p. 761-787 27 p.

Research output: Contribution to journalArticle

Open Access
File
34 Citations (Scopus)
120 Downloads (Pure)

Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

Sansom, R. S. & Wills, M. A., 29 Aug 2013, In : Scientific Reports. 3, 2545.

Research output: Contribution to journalArticle

Open Access
File
53 Citations (Scopus)
110 Downloads (Pure)

Functional nasal morphology of chimaerid fishes.

Kelsh, R., Sep 2013, In : Journal of Morphology. 274, 9, p. 987-1009 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
55 Citations (Scopus)

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

Sheppard, S. K., Didelot, X., Meric, G., Torralbo, A., Jolley, K. A., Kelly, D. J., Bentley, S. D., Maiden, M. C. J., Parkhill, J. & Falush, D., 16 Jul 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 29, p. 11923-11927 5 p.

Research output: Contribution to journalArticle

121 Citations (Scopus)

Genomic imprinting and parent-of-origin effects on complex traits

Lawson, H. A., Cheverud, J. M. & Wolf, J. B., Sep 2013, In : Nature Reviews Genetics. 14, 9, p. 609-617 9 p.

Research output: Contribution to journalArticle

Open Access
File
118 Citations (Scopus)
119 Downloads (Pure)

Governing intelligent virtual agent behaviour with norms

Lee, J., Li, T., De Vos, M. & Padget, J. A., 2013, International conference on Autonomous Agents and Multi-Agent Systems, AAMAS '13, Saint Paul, MN, USA, May 6-10, 2013. Gini, M. L., Shehory, O., Ito, T. & Jonker, C. M. (eds.). The International Foundation for Autonomous Agents and Multiagent Systems, p. 1205-1206 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
1 Citation (Scopus)
31 Downloads (Pure)

Handling change in normative specifications

Athakravi, D., Corapi, D., Russo, A., De Vos, M., Padget, J. & Satoh, K., 2013, Declarative Agent Languages and Technologies X : 10th International Workshop, DALT 2012, Valencia, Spain, June 4, 2012, Revised Selected Papers. Baldoni, M., Dennis, L., Mascardi, V. & Vasconcelos, W. (eds.). Berlin: Springer, Vol. 7784 LNAI. p. 1-19 20 p. (Lecture Notes in Computer Science ; vol. 7784).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
3 Citations (Scopus)
102 Downloads (Pure)

Harvesting, census timing and "hidden" hydra effects

Hilker, F. & Liz, E., Jun 2013, In : Ecological Complexity. 14, p. 95-107 13 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Homo homini lupus? Explaining antisocial punishment

Sylwester, K., Herrmann, B. & Bryson, J., Sep 2013, In : Journal of Neuroscience, Psychology, and Economics. 6, 3, p. 167-188 22 p.

Research output: Contribution to journalArticle

Open Access
File
27 Citations (Scopus)
123 Downloads (Pure)

How, if, and why species form

G. Rossberg, A., Rogers, T. C. & McKane, A. J., 1 Nov 2013, In : Scientist . 27, 11, 38010.

Research output: Contribution to journalEditorial

I-ABM: combining institutional frameworks and agent-based modelling for the design of enforcement policies

Balke, T., De Vos, M. & Padget, J., Nov 2013, In : Artificial Intelligence and Law. 21, 4, p. 371-398 28 p.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
110 Downloads (Pure)

Identification of Regions Important for Resistance and Signalling within the Antimicrobial Peptide Transporter BceAB of Bacillus subtilis

Kallenberg, F., Dintner, S., Schmitz, R. & Gebhard, S., 15 Jul 2013, In : Journal of Bacteriology. 195, 14, p. 3287-3297

Research output: Contribution to journalArticle

File
18 Citations (Scopus)
108 Downloads (Pure)

Immune anticipation of mating in Drosophila: Turandot M promotes immunity against sexually transmitted fungal infections

Zhong, W., Mcclure, C., Evans, C., Mlynski, D., Immonen, E., Ritchie, M. & Priest, N. K., 22 Dec 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1773, 9 p., 20132018.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Initiators, leaders, and recruitment mechanisms in the collective movements of damselfish

Ward, A. J. W., Herbert-Read, J. E., Jordan, L. A., James, R., Krause, J., Ma, Q., Rubenstein, D. I., Sumpter, D. J. T. & Morrell, L. J., Jun 2013, In : American Naturalist. 181, 6, p. 748-760 13 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Inspiration, collaboration, and cooperation in the PCMR community

Bosenberg, M., Kelsh, R. & Arnheiter, H., 1 Nov 2013, In : Pigment Cell and Melanoma Research. 26, 6, p. 785 1 p.

Research output: Contribution to journalEditorial

Iontophoresis-targeted, follicular delivery of minoxidil sulfate for the treatment of alopecia

Gelfuso, G. M., Gratieri, T., Delgado-Charro, M. B., Guy, R. H. & Vianna Lopez, R. F., 1 May 2013, In : Journal of Pharmaceutical Sciences. 102, 5, p. 1488-1494

Research output: Contribution to journalArticle

24 Citations (Scopus)

Learning a real time grasping strategy

Huang, B., El-Khoury, S., Li, M., Bryson, J. J. & Billard, A., 1 May 2013, IEEE International Conference on Robotics and Automation (ICRA) 2013. p. 593-600

Research output: Chapter in Book/Report/Conference proceedingConference contribution

28 Citations (Scopus)

Learning motion primitives of object manipulation using Mimesis Model

Huang, B., Bryson, J. J. & Inamura, T., 2013, 2013 IEEE International Conference on Robotics and Biomimetics (ROBIO). IEEE, p. 1144-1150 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
1 Citation (Scopus)
111 Downloads (Pure)

Legal conflict detection in interacting legal systems

Li, T., Balke, T., De Vos, M., Padget, J. & Satoh, K., 1 Jan 2013, Frontiers in Artificial Intelligence and Applications. Amsterdam, The Netherlands: IOS Press, p. 107-116 10 p. (Legal Knowledge and Information Systems; vol. 259).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Live imaging, identifying and tracking single cells in complex populations in vivo and ex vivo

Kang, M., Xenopoulos, P., Munoz-Descalzo, S., Lou, X. & Hadjantonakis, A-K., 2013, Imaging and Tracking Stem Cells: Methods and Protocols. Turksen, K. (ed.). Humana Press, p. 109-123 (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Local environment but not genetic differentiation influences biparental care in ten plover populations

Vincze, O., Székely, T., Küpper, C., AlRashidi, M., Amat, J. A., Argüelles Ticó, A., Burgas, D., Burke, T., Cavitt, J., Figuerola, J., Shobrak, M., Montalvo, T. & Kosztolányi, A., 17 Apr 2013, In : PLoS ONE. 8, 4, e60998.

Research output: Contribution to journalArticle

Open Access
File
23 Citations (Scopus)
103 Downloads (Pure)

Measuring cultural relativity of emotional valence and arousal using semantic clustering and Twitter

Bann, E. Y. & Bryson, J. J., 1 Aug 2013, COGSCI 2013. Cognitive Science Society, p. 1809-1814 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
28 Downloads (Pure)

Method for non-invasively determining the relative levels of two biological substances. T3

Delgado-Charro, M. & Guy, R., 4 Feb 2013, Patent No. ES2394691T, Priority date 22 Jun 2001, Priority No. EP01114750

Research output: Patent

Modelling legitimate expectations

De Vos, M., Balke, T. & Satoh, K., 2013, New Frontiers in Artificial Intelligence: JSAI-isAI 2012 Workshops, LENLS, JURISIN, MiMI, Miyazaki, Japan, November 30 and December 1, 2012, Revised Selected Papers. Motomura, Y., Butler, A. & Bekki, D. (eds.). Berlin: Springer, p. 141-156 17 p. (Lecture Notes in Computer Science; vol. 7856).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
98 Downloads (Pure)

Modelling normative awareness: First considerations

Rauwolf, P., Balke, T. & De Vos, M., 2013, p. 65-71. 7 p.

Research output: Contribution to conferencePaper

File
38 Downloads (Pure)

Modelling the use of Wolbachia to control dengue fever transmission

Hughes, H. & Britton, N. F., 1 May 2013, In : Bulletin of Mathematical Biology. 75, 5, p. 796-818 23 p.

Research output: Contribution to journalArticle

Open Access
File
52 Citations (Scopus)
131 Downloads (Pure)

Monge–Ampére based moving mesh methods for numerical weather prediction, with applications to the Eady problem

Budd, C. J., Cullen, M. J. P. & Walsh, E. J., 1 Mar 2013, In : Journal of Computational Physics. 236, p. 247-270 34 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Monte Carlo simulation and free energies of mixed oxide nanoparticles

Purton, J. A., Parker, S. C. & Allan, N. L., 7 May 2013, In : Physical Chemistry Chemical Physics. 15, 17, p. 6219-6225 7 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Mutations in C10orf11, a melanocyte-differentiation gene, cause autosomal-recessive albinism

Gronskov, K., Dooley, C. M., Ostergaard, E., Kelsh, R. N., Hansen, L., Levesque, M. P., Vilhelmsen, K., Mollgard, K., Stemple, D. & Rosenberg, T., 7 Mar 2013, In : American Journal of Human Genetics. 92, 3, p. 415-421 7 p.

Research output: Contribution to journalArticle

54 Citations (Scopus)

Natural action selection, modeling

Seth, A. K. & Bryson, J. J., 2013, Encyclopedia of the mind. Pashler, H. (ed.). Thousand Oaks, CA: Sage Publications

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

Network dynamics contribute to structure: Nestedness in mutualistic networks

McQuaid, C. F. & Britton, N. F., 1 Dec 2013, In : Bulletin of Mathematical Biology. 75, 12, p. 2372-2388 17 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Neural crest: origin, migration and differentiation

Kelsh, R. N. & Erickson, C. A., 2013, In : eLS.

Research output: Contribution to journalArticle

No overall benefit of predator exclosure cages for the endangered St. Helena Plover Charadrius sanctaehelenae

Burns, F., McCulloch, N., Szekely, T. & Bolton, M., Apr 2013, In : Ibis. 155, 2, p. 397-401 5 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Open questions: A logic (or lack thereof) of genome organization

Hurst, L. D., 28 May 2013, In : BMC Biology. 11, 58.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli

Méric, G., Kemsley, E. K., Falush, D., Saggers, E. J. & Lucchini, S., Feb 2013, In : Environmental Microbiology. 15, 2, p. 487-501 15 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)

Positively charged residues are the major determinants of ribosomal velocity

Charneski, C. A. & Hurst, L. D., 12 Mar 2013, In : PLoS Biology. 11, 3, e1001508.

Research output: Contribution to journalArticle

135 Citations (Scopus)

Predator-prey oscillations can shift when diseases become endemic

Bate, A. & Hilker, F., 7 Jan 2013, In : Journal of Theoretical Biology. 316, p. 1-8

Research output: Contribution to journalArticle

16 Citations (Scopus)

Progressive genome-wide introgression in agricultural Campylobacter coli

Sheppard, S. K., Didelot, X., Jolley, K. A., Darling, A. E., Pascoe, B., Meric, G., Kelly, D. J., Cody, A., Colles, F. M., Strachan, N. J. C., Ogden, I. D., Forbes, K., French, N. P., Carter, P., Miller, W. G., McCarthy, N. D., Owen, R., Litrup, E., Egholm, M., Affourtit, J. P. & 4 others, Bentley, S. D., Parkhill, J., Maiden, M. C. J. & Falush, D., Feb 2013, In : Molecular Ecology. 22, 4, p. 1051-1064 14 p.

Research output: Contribution to journalArticle

Open Access
70 Citations (Scopus)

Random networks with sublinear preferential attachment: the giant component

Dereich, S. & Morters, P., Jan 2013, In : Annals of Probability. 41, 1, p. 329-384 56 p.

Research output: Contribution to journalArticle

File
21 Citations (Scopus)
94 Downloads (Pure)

Refining reintroduction release methods: modelling post-release survival of captive-reared Great Bustards

Burnside, R. J., Dawes, A., Ashbrook, K., Waters, D., Carter, I., Lock, L. & Szekely, T., 2013, (Accepted/In press) In : Ibis.

Research output: Contribution to journalArticle

Resolution of sharp fronts in the presence of model error in variational data assimilation

Freitag, M. A., Nichols, N. K. & Budd, C. J., Apr 2013, In : Quarterly Journal of the Royal Meteorological Society. 139, 672, p. 742-757 16 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Resources allocations in healthcare for cancer: A case study using generalised additive mixed models

Musio, M., Sauleau, E-A. & Augustin, N., 2013, In : Geospatial Health. 7, 1, p. 83-89 7 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Richard Guy and his collaborators: 'crackling' the skin code

Delgado-Charro, M. B., Jul 2013, In : Skin Pharmacology and Physiology. 26, 4-6, p. 302-312

Research output: Contribution to journalSpecial issue

2 Citations (Scopus)

Sex differences in incubation behaviour but not mortality risk in a threatened shorebird

Burns, F., Mcculloch, N., Dos Remedios, N., Bolton, M. & Szekely, T., Oct 2013, In : Ibis. 155, 4, p. 877-880 4 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Sex-specific habitat use by Great Bustards in the UK

Ashbrook, K., Burnside, R. J., Waters, D., Carter, I., Evans, A., Green, R. & Szekely, T., 2013, (Accepted/In press) In : Animal Conservation.

Research output: Contribution to journalArticle

Sexual networks: Measuring sexual selection in structured, polyandrous populations

McDonald, G. C., James, R., Krause, J. & Pizzari, T., 5 Mar 2013, In : Philosophical Transactions of the Royal Society B - Biological Sciences. 368, 1613

Research output: Contribution to journalArticle

38 Citations (Scopus)